Miyakogusa Predicted Gene

Lj1g3v4372220.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4372220.1 tr|A9S8S4|A9S8S4_PHYPA Predicted protein
(Fragment) OS=Physcomitrella patens subsp. patens
GN=PHYPAD,38.1,0.00000000002,no description,NULL;
seg,NULL,CUFF.32300.1
         (263 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g093640.1 | hypothetical protein | HC | chr7:37234622-3723...   329   2e-90

>Medtr7g093640.1 | hypothetical protein | HC |
           chr7:37234622-37232148 | 20130731
          Length = 259

 Score =  329 bits (843), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 172/266 (64%), Positives = 206/266 (77%), Gaps = 10/266 (3%)

Query: 1   MNSLSLGSFTLT--YPPPCKFRTHLHPNFHNLYIKGANXXXXXXXXXXXXAPTSLRA-SK 57
           MNS SL SF LT   P PCKF    HP F    IK               + ++    S 
Sbjct: 1   MNSSSLASFILTPPLPLPCKFN---HPRFQ---IKPQPIFHHPLNSISLCSKSNFSTKSS 54

Query: 58  SNFDAPVSLPEGNASFVPIEEIIEKDWSVLYHGDPSADNRIVSAGKVEESSRVLVSTGSE 117
           SN + PVS+PE NAS+V +EE I+KDWSVL +  P+ D RI+S+GK++E+SRVLVS+GSE
Sbjct: 55  SNINNPVSIPEENASYVAVEEFIDKDWSVLDYTGPNID-RIISSGKIDENSRVLVSSGSE 113

Query: 118 DFVDCLMGFSPFKSLLVVHDSLLILACIKEKDDGIKCWQGEITLVPEKWAPFDVVFLYFL 177
           +FVDCL+G S FKS+LV+HDSLLILA + EK D IKCWQGE+T+VPEKW+PFDVVFLYFL
Sbjct: 114 EFVDCLVGGSKFKSMLVLHDSLLILALLIEKYDNIKCWQGEVTIVPEKWSPFDVVFLYFL 173

Query: 178 PGLPFKLDEILGSLANKCSPGGRVIISHPQGRQALEQQREQYPEVVVSDLPDKTYLQTAA 237
           P LPFKL+++LGSLA KCSPGGRVIISHPQGR+ L+QQR+QYP+VVVSDLPDKT+LQ+ A
Sbjct: 174 PALPFKLEDVLGSLAPKCSPGGRVIISHPQGREILKQQRQQYPDVVVSDLPDKTHLQSVA 233

Query: 238 AANSFDVAEFVDEPSFYLAVLICSRA 263
           AANSF+VAEFVDEP FYLAVLI SR 
Sbjct: 234 AANSFNVAEFVDEPGFYLAVLIKSRT 259