Miyakogusa Predicted Gene

Lj1g3v4328790.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4328790.1 Non Characterized Hit- tr|Q8LFN8|Q8LFN8_ARATH
Putative uncharacterized protein OS=Arabidopsis
thalia,53.78,2e-18,WRC,WRC; seg,NULL,CUFF.32369.1
         (336 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g093350.1 | WRC protein | LC | chr7:37092560-37090326 | 20...   223   3e-58
Medtr1g054175.1 | WRC protein | HC | chr1:23188887-23187078 | 20...   211   8e-55
Medtr7g093360.1 | WRC protein | HC | chr7:37098833-37096840 | 20...   208   7e-54
Medtr1g054175.2 | WRC protein | HC | chr1:23189249-23186837 | 20...   196   2e-50
Medtr7g093350.2 | WRC protein | LC | chr7:37091771-37090326 | 20...   192   5e-49
Medtr7g093360.2 | WRC protein | HC | chr7:37098833-37096646 | 20...   186   3e-47

>Medtr7g093350.1 | WRC protein | LC | chr7:37092560-37090326 |
           20130731
          Length = 338

 Score =  223 bits (567), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 159/357 (44%), Positives = 196/357 (54%), Gaps = 40/357 (11%)

Query: 1   MRIRKSQTLFSSFSLS------DPHLTNRLPPALVQLAVDAAPKAEE------APLSLDR 48
           MRIRK Q LFSS          DPHL N+  P +VQ      P + +      A LSLDR
Sbjct: 1   MRIRKRQLLFSSSDSLSPLHLSDPHLINQ-SPVVVQQGDGPKPCSSQSQEHVSAGLSLDR 59

Query: 49  CRPSDH--PLL--PSNGCDDPSG--EGGAHRPQQRNKQEPLEEVEDVRGQLGKGD-SAGE 101
            +PSD   PL+   +NG D PS   E G H+  Q NK +PL++   VRG+  + D S G 
Sbjct: 60  YQPSDQTLPLIGKLNNGYDYPSSVEESGVHK--QHNKLDPLDK--KVRGEEKESDDSGGN 115

Query: 102 KGNHTRKGCIFGSEVMQVDSFPPPSPPSTQDGRWYDGERSIPLKKRRGSFENNNATAASH 161
           K NHT KG     +++ V    P S   ++D  W +GE++IPLKKR+G F+NN       
Sbjct: 116 KSNHTSKG-----DILVVSQALPSSSTFSEDEIWLEGEKTIPLKKRKGRFQNNGMEG--- 167

Query: 162 DXXXXXXXXXXXCSSSATQNXXXXXXXXXXXSASNGKKRA--RGSAVMEGSRCSRVNGRG 219
                        ++   +            +  N KK+   RGSAVMEGSRCSRVNGRG
Sbjct: 168 ---NDSKKVKAKMNTKMNKKCSLGKDDEESETKVNIKKKVTKRGSAVMEGSRCSRVNGRG 224

Query: 220 WRCCQPTLVGYSLCEHHLGKGRLRSMASVRNRSMKKEVQDLLPQPXXXXXXXXXXXXXLE 279
           WRCCQ TLVGYSLCEHHLGKGRLRSM SVRNRS          +P             LE
Sbjct: 225 WRCCQQTLVGYSLCEHHLGKGRLRSMTSVRNRS-NIGFSTTTTEPNNAVDSASSSNSDLE 283

Query: 280 RKNKSGGADYPLGKSEKKAAVAVTKKRMKLGMVKARSMSSLMGQTNTQVVVADENNK 336
           +K      D  LG  ++K  V + KKRMKLGMVKARSM SL+GQT+ +VVV +ENNK
Sbjct: 284 KKIIDENDD-TLGNDDEKKPVVIAKKRMKLGMVKARSMISLLGQTDNKVVV-NENNK 338


>Medtr1g054175.1 | WRC protein | HC | chr1:23188887-23187078 |
           20130731
          Length = 301

 Score =  211 bits (537), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 152/332 (45%), Positives = 185/332 (55%), Gaps = 46/332 (13%)

Query: 20  LTNRLPPALVQL--AVDAAPKAE------EAPLSL-DRCRPSDHPL----LPSNGCDDPS 66
           + NR  P +VQL  A   +PK         A LSL D  +PSD  L     P+NGCDD  
Sbjct: 1   MINR-SPVVVQLNDATTTSPKLSCTHDLATALLSLSDHRQPSDQRLPPIGKPTNGCDDSL 59

Query: 67  GEGGAHRPQQRNKQEPLEEVEDVRGQLGKGDSAGEKGNHTRKGCIFGSEVMQVDSFPPPS 126
                    Q  KQE L  VED RGQ+ +G   G+KGN TR G I  ++    + F P  
Sbjct: 60  S--------QHKKQEIL--VEDGRGQVKEG---GQKGNDTRNGSILSAQT-STEVFSPSR 105

Query: 127 PPS-TQDGRWYDGERSIPLKKRRGSFENNNATAASHDXXXXXXXXXXXCSSSATQNXXXX 185
           P S  QD RW DG+++ PLKKRRG+F    AT ++ +           C  S   +    
Sbjct: 106 PSSHKQDWRWNDGDKAFPLKKRRGNF----ATNSNDNAKKMKTNTKKKCYDSNEWDEEED 161

Query: 186 XXXXXXXSASNGK-KRARGSAVMEGSRCSRVNGRGWRCCQPTLVGYSLCEHHLGKGRLRS 244
                       K K+ RG A+MEGSRCSRVNGRGWRCCQ TLVGYSLCEHHLGKGRLRS
Sbjct: 162 HREEEVVMVRETKQKKVRGGALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRS 221

Query: 245 MASVRNRSMKKEVQDLLPQPXXXXXXXXXXXXXLERKNKSGGADYPLGKSEKKAAVAVTK 304
           M SVRNRS+  E ++ +  P             LE+  K  G D    K EKK  + + K
Sbjct: 222 MTSVRNRSIVAE-KNSIENP-----ISQTEPPSLEKLTKFDGED----KDEKKPLI-IAK 270

Query: 305 KRMKLGMVKARSMSSLMGQTNTQVVVADENNK 336
           KRMK+GMVKARSMSSL+GQT++ +VVA ENNK
Sbjct: 271 KRMKIGMVKARSMSSLLGQTSSDLVVA-ENNK 301


>Medtr7g093360.1 | WRC protein | HC | chr7:37098833-37096840 |
           20130731
          Length = 342

 Score =  208 bits (529), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 158/359 (44%), Positives = 188/359 (52%), Gaps = 40/359 (11%)

Query: 1   MRIRKSQTLFSSFSLS------DPHLTNRLPPALVQLAVDAAP---------KAEEAPLS 45
           MRIRK Q LFSS          DPHL N+  P +VQL     P         +   A LS
Sbjct: 1   MRIRKRQLLFSSSDSLSPLNLSDPHLMNK-SPMVVQLGEGPKPCSSTPVLSREHASAGLS 59

Query: 46  LDRCRPSDH--PLL--PSNGCDDPSG--EGGAHRPQQRNKQEPLEEVEDVRGQLGKGDSA 99
           LD  +PSD   PL+   +NG D PSG  E G H+  Q NK +PLEE      +  K    
Sbjct: 60  LDHYQPSDQTLPLIGKLNNGHDYPSGVEESGVHK--QHNKLDPLEEKVR---EEEKESGE 114

Query: 100 GEKGNHTRKGCIFGSEVMQVDSFPPPSPPSTQDGRWYDGERSIPLKKRRGSFENNNATAA 159
             K N+   G     +++ V    P S    QDGRW +GE++ PLKKR+G FEN    A 
Sbjct: 115 ENKSNNISNG-----DILVVSQVLPSSSTFEQDGRWCEGEKAFPLKKRKGRFEN---IAM 166

Query: 160 SHDXXXXXXXXXXXCSSSATQNXXXXXXXXXXXSASNGKKRA--RGSAVMEGSRCSRVNG 217
             +             +    +              N KK+   RGSAVMEGSRCSRVNG
Sbjct: 167 EGNDSKKVKAKTNTKMNKKKGSLGKDDEDEESERKVNIKKKVTKRGSAVMEGSRCSRVNG 226

Query: 218 RGWRCCQPTLVGYSLCEHHLGKGRLRSMASVRNRSMKKEVQDLLPQPXXXXXXXXXXXXX 277
           RGWRCCQ TLVGYSLCEHHLGKGRLRSM SVRNRS          +P             
Sbjct: 227 RGWRCCQQTLVGYSLCEHHLGKGRLRSMTSVRNRS-NIGFSTTTTEPNNAVDSASSSNSD 285

Query: 278 LERKNKSGGADYPLGKSEKKAAVAVTKKRMKLGMVKARSMSSLMGQTNTQVVVADENNK 336
           LE+K      D  LG  ++K  V + KKRMKLGMVKARSMSSL+GQT+ +VVV +ENNK
Sbjct: 286 LEKKIIDENDD-TLGNDDEKKPVVIAKKRMKLGMVKARSMSSLLGQTDNKVVV-NENNK 342


>Medtr1g054175.2 | WRC protein | HC | chr1:23189249-23186837 |
           20130731
          Length = 246

 Score =  196 bits (499), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 123/255 (48%), Positives = 154/255 (60%), Gaps = 23/255 (9%)

Query: 85  EVEDVRGQLGKGDSAGEKGNHTRKGCIFGSEVMQVDSFPPPSPPS-TQDGRWYDGERSIP 143
           +VED RGQ+ +G   G+KGN TR G I  ++    + F P  P S  QD RW DG+++ P
Sbjct: 12  QVEDGRGQVKEG---GQKGNDTRNGSILSAQT-STEVFSPSRPSSHKQDWRWNDGDKAFP 67

Query: 144 LKKRRGSFENNNATAASHDXXXXXXXXXXXC--SSSATQNXXXXXXXXXXXSASNGKKRA 201
           LKKRRG+F    AT ++ +           C  S+   +              +  KK+ 
Sbjct: 68  LKKRRGNF----ATNSNDNAKKMKTNTKKKCYDSNEWDEEEDHREEEVVMVRETKQKKKV 123

Query: 202 RGSAVMEGSRCSRVNGRGWRCCQPTLVGYSLCEHHLGKGRLRSMASVRNRSMKKEVQDLL 261
           RG A+MEGSRCSRVNGRGWRCCQ TLVGYSLCEHHLGKGRLRSM SVRNRS+  E ++ +
Sbjct: 124 RGGALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMTSVRNRSIVAE-KNSI 182

Query: 262 PQPXXXXXXXXXXXXXLERKNKSGGADYPLGKSEKKAAVAVTKKRMKLGMVKARSMSSLM 321
             P             LE+  K  G D    K EKK  + + KKRMK+GMVKARSMSSL+
Sbjct: 183 ENP-----ISQTEPPSLEKLTKFDGED----KDEKKPLI-IAKKRMKIGMVKARSMSSLL 232

Query: 322 GQTNTQVVVADENNK 336
           GQT++ +VVA ENNK
Sbjct: 233 GQTSSDLVVA-ENNK 246


>Medtr7g093350.2 | WRC protein | LC | chr7:37091771-37090326 |
           20130731
          Length = 247

 Score =  192 bits (487), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 113/242 (46%), Positives = 137/242 (56%), Gaps = 16/242 (6%)

Query: 97  DSAGEKGNHTRKGCIFGSEVMQVDSFPPPSPPSTQDGRWYDGERSIPLKKRRGSFENNNA 156
           DS G K NHT KG     +++ V    P S   ++D  W +GE++IPLKKR+G F+NN  
Sbjct: 20  DSGGNKSNHTSKG-----DILVVSQALPSSSTFSEDEIWLEGEKTIPLKKRKGRFQNNGM 74

Query: 157 TAASHDXXXXXXXXXXXCSSSATQNXXXXXXXXXXXSASNGKKRA--RGSAVMEGSRCSR 214
                             ++   +            +  N KK+   RGSAVMEGSRCSR
Sbjct: 75  EG------NDSKKVKAKMNTKMNKKCSLGKDDEESETKVNIKKKVTKRGSAVMEGSRCSR 128

Query: 215 VNGRGWRCCQPTLVGYSLCEHHLGKGRLRSMASVRNRSMKKEVQDLLPQPXXXXXXXXXX 274
           VNGRGWRCCQ TLVGYSLCEHHLGKGRLRSM SVRNRS          +P          
Sbjct: 129 VNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMTSVRNRS-NIGFSTTTTEPNNAVDSASSS 187

Query: 275 XXXLERKNKSGGADYPLGKSEKKAAVAVTKKRMKLGMVKARSMSSLMGQTNTQVVVADEN 334
              LE+K      D  LG  ++K  V + KKRMKLGMVKARSM SL+GQT+ +VVV +EN
Sbjct: 188 NSDLEKKIIDENDD-TLGNDDEKKPVVIAKKRMKLGMVKARSMISLLGQTDNKVVV-NEN 245

Query: 335 NK 336
           NK
Sbjct: 246 NK 247


>Medtr7g093360.2 | WRC protein | HC | chr7:37098833-37096646 |
           20130731
          Length = 252

 Score =  186 bits (471), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 109/228 (47%), Positives = 129/228 (56%), Gaps = 8/228 (3%)

Query: 111 IFGSEVMQVDSFPPPSPPSTQDGRWYDGERSIPLKKRRGSFENNNATAASHDXXXXXXXX 170
           I   +++ V    P S    QDGRW +GE++ PLKKR+G FEN    A   +        
Sbjct: 31  ISNGDILVVSQVLPSSSTFEQDGRWCEGEKAFPLKKRKGRFEN---IAMEGNDSKKVKAK 87

Query: 171 XXXCSSSATQNXXXXXXXXXXXSASNGKKRA--RGSAVMEGSRCSRVNGRGWRCCQPTLV 228
                +    +              N KK+   RGSAVMEGSRCSRVNGRGWRCCQ TLV
Sbjct: 88  TNTKMNKKKGSLGKDDEDEESERKVNIKKKVTKRGSAVMEGSRCSRVNGRGWRCCQQTLV 147

Query: 229 GYSLCEHHLGKGRLRSMASVRNRSMKKEVQDLLPQPXXXXXXXXXXXXXLERKNKSGGAD 288
           GYSLCEHHLGKGRLRSM SVRNRS          +P             LE+K      D
Sbjct: 148 GYSLCEHHLGKGRLRSMTSVRNRS-NIGFSTTTTEPNNAVDSASSSNSDLEKKIIDENDD 206

Query: 289 YPLGKSEKKAAVAVTKKRMKLGMVKARSMSSLMGQTNTQVVVADENNK 336
             LG  ++K  V + KKRMKLGMVKARSMSSL+GQT+ +VVV +ENNK
Sbjct: 207 -TLGNDDEKKPVVIAKKRMKLGMVKARSMSSLLGQTDNKVVV-NENNK 252