Miyakogusa Predicted Gene

Lj1g3v4317680.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4317680.2 tr|G7KVD6|G7KVD6_MEDTR DNA polymerase delta small
subunit OS=Medicago truncatula GN=MTR_7g093210
PE=,86.54,0,DNA_pol_E_B,DNA polymerase alpha/epsilon, subunit B; DNA
POLYMERASE DELTA SUBUNIT 2,NULL; DNA POLYME,CUFF.32264.2
         (435 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g093210.1 | DNA polymerase delta small subunit | HC | chr7...   779   0.0  

>Medtr7g093210.1 | DNA polymerase delta small subunit | HC |
           chr7:37022414-37029947 | 20130731
          Length = 454

 Score =  779 bits (2012), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/431 (86%), Positives = 404/431 (93%), Gaps = 4/431 (0%)

Query: 1   MVMDRVQCSYEPLDEPFEIGKEMYRGQQYSQIYFARLHLMRTLLHSLVPHLKPNLPVCTV 60
           M   R+QCSYE LDE FEIGKEMYRGQQYSQIYFARLHLMRTLL+SLVPH KPN PVCTV
Sbjct: 3   MEFKRMQCSYESLDESFEIGKEMYRGQQYSQIYFARLHLMRTLLYSLVPHWKPNTPVCTV 62

Query: 61  LGLEEQAGKECVIVGTLYKHMKLKPCILDEYSKERSAVPLVKPHNFMHPDDHLILEDESG 120
           LGLEE  GKECVIVGTL+K+MKLKPCILDEYSK+RS VP VK HNF+H DD+L+LEDESG
Sbjct: 63  LGLEE--GKECVIVGTLFKNMKLKPCILDEYSKQRS-VP-VKSHNFVHEDDYLVLEDESG 118

Query: 121 RVKLGGDLISPSVYVTGIVVAVHGKETEAGEFLVQDVLEAGLPPQIEFPLKSREDKYVVF 180
           RVKLGG +I PSVYVTGIVVA+HGKET AG+FLVQ+VLEAGLPPQIEFP+KSREDKYVV 
Sbjct: 119 RVKLGGSIIVPSVYVTGIVVALHGKETGAGDFLVQEVLEAGLPPQIEFPIKSREDKYVVL 178

Query: 181 VSGLSIGSSNSNPLQFQLLIDHITGHLGDEKEKSIASQTVRVVIAGNSVEIPSGLFNGQN 240
           VSGLS+GSS SNPLQFQLL+DHITGHLGDEKE+SIA+Q VRVVIAGNSVE+P GL NGQN
Sbjct: 179 VSGLSVGSSKSNPLQFQLLVDHITGHLGDEKEQSIAAQIVRVVIAGNSVEMPRGLLNGQN 238

Query: 241 MGSKDLSRISEPIKELDILLNQIAAGLPLDIMPGPSDPSNYSLPQQALHRCLFPGSSAYN 300
           + SKDLS+++EP+KELDI+LNQIAAGLPLDIMPGP DP+N+SLPQQALH+CLFPGSS YN
Sbjct: 239 LVSKDLSKMAEPVKELDIMLNQIAAGLPLDIMPGPCDPANFSLPQQALHKCLFPGSSVYN 298

Query: 301 TFTSCTNPHSFELDNIRFLGTSGQNVDDLEKYSEAKDKLEFMERTLRWRHLAPTAPNTLG 360
           TF SCTNPH FELD IRFLGTSGQNVDDLEKYSEAKDKL+FMERTLRWRHLAPTAPNTLG
Sbjct: 299 TFKSCTNPHCFELDGIRFLGTSGQNVDDLEKYSEAKDKLDFMERTLRWRHLAPTAPNTLG 358

Query: 361 CYPYTDRDPFFIESCPHVYFIGNQDKYDTRVIKGSEGQLVRLICVPKFSETGVAVMLNLR 420
           CYPYTDRDPFFIESCPHVYF+GNQDKYDTRVIKGSEGQLVRL+CVPKFSETGVAVMLNLR
Sbjct: 359 CYPYTDRDPFFIESCPHVYFVGNQDKYDTRVIKGSEGQLVRLVCVPKFSETGVAVMLNLR 418

Query: 421 DLECHALSFGT 431
           DLECHALSFGT
Sbjct: 419 DLECHALSFGT 429