Miyakogusa Predicted Gene
- Lj1g3v4317580.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v4317580.1 tr|C1E1S5|C1E1S5_MICSR Predicted protein
OS=Micromonas sp. (strain RCC299 / NOUM17) GN=MICPUN_56977
,28.57,8e-19,seg,NULL; Nse4,Nse4; SUBFAMILY NOT NAMED,NULL;
UNCHARACTERIZED,Nse4,CUFF.32253.1
(314 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr7g093090.1 | Nse4, component of Smc5/6 DNA repair complex p... 376 e-104
Medtr1g116900.2 | Nse4, component of Smc5/6 DNA repair complex p... 272 3e-73
Medtr1g116900.1 | Nse4, component of Smc5/6 DNA repair complex p... 272 3e-73
Medtr0042s0070.1 | Nse4, component of Smc5/6 DNA repair complex ... 101 8e-22
>Medtr7g093090.1 | Nse4, component of Smc5/6 DNA repair complex
protein | HC | chr7:36968665-36972152 | 20130731
Length = 328
Score = 376 bits (966), Expect = e-104, Method: Compositional matrix adjust.
Identities = 188/294 (63%), Positives = 226/294 (76%), Gaps = 5/294 (1%)
Query: 22 DAADYHQTRHARRGLRSSYLAIKNRIH-DEKDEIASPESKKFDLIFGEMESLHQLVTKPR 80
D DY QT + RR LRS YLA++N I DEK+ IA +SK F IF ++E LH+ VT PR
Sbjct: 36 DEVDY-QTSNGRRVLRSRYLAVQNLIRGDEKENIAKTDSKTFGSIFSKIEKLHKSVTTPR 94
Query: 81 EQVADAQALLDITKSLVVTARAHGGGGLTPSSFVAHMLKEFGGKGGGATTSTEDCSRNLI 140
EQVADAQALLDITKSL ++ +AH GGLTPS+FV H+L++FG +GGG +TS EDCSRN I
Sbjct: 95 EQVADAQALLDITKSLALSVKAHSSGGLTPSTFVTHILEKFG-QGGGTSTSREDCSRNSI 153
Query: 141 AWKDIGVAVSYVFGGGYGCSTMIGPIDAXXXXXXXXXXXXXXXSIELARPEELGGGISEE 200
AW+DIG+AVS +FG GYGCSTMIGP+++ + +LARP E+
Sbjct: 154 AWQDIGIAVSSIFGAGYGCSTMIGPMESKIKPKRVYRRRSVKPT-QLARPAEVVESSKNG 212
Query: 201 KTDTDKNMLTMFNILKKNRVVRLENLVLNRNSFAQTVENLFALSFLVKDGRAEIRVNEAG 260
+ DTDKNMLTMFNILKKNR V LENLVLNR SFAQTVENLFALSFLVKDGRA+I+V+++
Sbjct: 213 RNDTDKNMLTMFNILKKNRSVNLENLVLNRTSFAQTVENLFALSFLVKDGRAQIKVDKSR 272
Query: 261 QQLVLPRNAPAANAVLTKDVAFSHFVFRFDFNDWKLMVSTVGVGEELMPDRNSQ 314
+ LV PRNAPAA +V++ DVA +HFVFRFD+NDWKLMV TV VGEELMP RNSQ
Sbjct: 273 RHLVSPRNAPAAKSVISMDVALTHFVFRFDYNDWKLMVRTV-VGEELMPQRNSQ 325
>Medtr1g116900.2 | Nse4, component of Smc5/6 DNA repair complex
protein | HC | chr1:52801866-52798334 | 20130731
Length = 384
Score = 272 bits (696), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 134/280 (47%), Positives = 191/280 (68%), Gaps = 10/280 (3%)
Query: 33 RRGLRSSYLAIKNRIHDEKDEIASPESKKFDLIFGEMESLHQLVTKPREQVADAQALLDI 92
RR +RS + +K+ I++EKD++ + +S+KFD I E + LH+ V KPREQVADA+ALLD+
Sbjct: 44 RRIIRSEFFKLKSLINEEKDDLMNGDSEKFDSILHEFDKLHEQVKKPREQVADAEALLDL 103
Query: 93 TKSLVVTARAHGGGGLTPSSFVAHMLKEFGGKGGGATTSTEDCSRNLIAWKDIGVAVSYV 152
T++LV + ++ G+TPS FV+ +LK + A + I W +G++VS +
Sbjct: 104 TRTLVGSVKSLVNEGVTPSQFVSSLLKHYAHPPNNAAS---------IDWHKLGISVSPI 154
Query: 153 FGGGYGCSTMIGPID-AXXXXXXXXXXXXXXXSIELARPEELGGGISEEKTDTDKNMLTM 211
F +G STM+GP++ S ARP++L EEKTDTDKNM TM
Sbjct: 155 FLTVHGSSTMLGPMENQLKQRKTIVSRKRNPRSTTTARPQQLQDTEGEEKTDTDKNMSTM 214
Query: 212 FNILKKNRVVRLENLVLNRNSFAQTVENLFALSFLVKDGRAEIRVNEAGQQLVLPRNAPA 271
FNIL++N+ V+LE+L+LNR SFAQTVENLFALSFLVKDGRAEI +++ V P+NAPA
Sbjct: 215 FNILRENKKVQLEHLILNRFSFAQTVENLFALSFLVKDGRAEISMDDKRSHYVSPKNAPA 274
Query: 272 ANAVLTKDVAFSHFVFRFDFNDWKLMVSTVGVGEELMPDR 311
AN++++K+V+++HFVFR+D+ DWK+M V G+ELMP R
Sbjct: 275 ANSIMSKEVSYTHFVFRYDYKDWKIMKDIVPDGKELMPHR 314
>Medtr1g116900.1 | Nse4, component of Smc5/6 DNA repair complex
protein | HC | chr1:52801926-52798628 | 20130731
Length = 384
Score = 272 bits (696), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 134/280 (47%), Positives = 191/280 (68%), Gaps = 10/280 (3%)
Query: 33 RRGLRSSYLAIKNRIHDEKDEIASPESKKFDLIFGEMESLHQLVTKPREQVADAQALLDI 92
RR +RS + +K+ I++EKD++ + +S+KFD I E + LH+ V KPREQVADA+ALLD+
Sbjct: 44 RRIIRSEFFKLKSLINEEKDDLMNGDSEKFDSILHEFDKLHEQVKKPREQVADAEALLDL 103
Query: 93 TKSLVVTARAHGGGGLTPSSFVAHMLKEFGGKGGGATTSTEDCSRNLIAWKDIGVAVSYV 152
T++LV + ++ G+TPS FV+ +LK + A + I W +G++VS +
Sbjct: 104 TRTLVGSVKSLVNEGVTPSQFVSSLLKHYAHPPNNAAS---------IDWHKLGISVSPI 154
Query: 153 FGGGYGCSTMIGPID-AXXXXXXXXXXXXXXXSIELARPEELGGGISEEKTDTDKNMLTM 211
F +G STM+GP++ S ARP++L EEKTDTDKNM TM
Sbjct: 155 FLTVHGSSTMLGPMENQLKQRKTIVSRKRNPRSTTTARPQQLQDTEGEEKTDTDKNMSTM 214
Query: 212 FNILKKNRVVRLENLVLNRNSFAQTVENLFALSFLVKDGRAEIRVNEAGQQLVLPRNAPA 271
FNIL++N+ V+LE+L+LNR SFAQTVENLFALSFLVKDGRAEI +++ V P+NAPA
Sbjct: 215 FNILRENKKVQLEHLILNRFSFAQTVENLFALSFLVKDGRAEISMDDKRSHYVSPKNAPA 274
Query: 272 ANAVLTKDVAFSHFVFRFDFNDWKLMVSTVGVGEELMPDR 311
AN++++K+V+++HFVFR+D+ DWK+M V G+ELMP R
Sbjct: 275 ANSIMSKEVSYTHFVFRYDYKDWKIMKDIVPDGKELMPHR 314
>Medtr0042s0070.1 | Nse4, component of Smc5/6 DNA repair complex
protein | HC | scaffold0042:32235-31629 | 20130731
Length = 174
Score = 101 bits (252), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 89/149 (59%), Gaps = 11/149 (7%)
Query: 20 SDDAADYHQTRHARRGLRSSYLAIKNRIHDEKDEIASPESKKFDLIFGEMESLHQLVTKP 79
+D+ + HQ + RR +RS + +K+ I+++KD++ + S KFD I + + L + V KP
Sbjct: 27 ADEEEEEHQDSNIRRIIRSEFFKLKSLINEKKDDLMNTASDKFDSILHDFDKLDEQVKKP 86
Query: 80 REQVADAQALLDITKSLVVTARAHGGGGLTPSSFVAHMLKEFGGKGGGATTSTEDCSRNL 139
+EQ+ DA+ALLD+T++LV + + G+TPS FV+ +LK + +
Sbjct: 87 QEQIVDAEALLDLTRTLVGSVNSMVNEGVTPSQFVSSLLKHYAHPPNTS----------- 135
Query: 140 IAWKDIGVAVSYVFGGGYGCSTMIGPIDA 168
I W+ +G+ VS +F +G STM+ P+++
Sbjct: 136 IDWQKLGIFVSPIFLTVHGSSTMLDPMES 164