Miyakogusa Predicted Gene
- Lj1g3v4317470.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v4317470.1 Non Characterized Hit- tr|D7FN41|D7FN41_ECTSI
Uncharacterized protein OS=Ectocarpus siliculosus
GN=U,47.67,7e-16,RRM_1,RNA recognition motif domain; RNA-binding
domain, RBD,NULL; RNA recognition motif,RNA recognit,CUFF.32238.1
(337 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr4g088010.1 | heterogeneous nuclear ribonucleoprotein | HC |... 202 5e-52
Medtr8g463890.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 192 4e-49
Medtr7g088140.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 173 3e-43
Medtr7g088140.5 | RNA recognition motif, a.k.a. RRM, RBD protein... 173 3e-43
Medtr7g088140.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 173 3e-43
Medtr7g088140.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 173 3e-43
Medtr5g088220.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 172 3e-43
Medtr5g088220.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 172 3e-43
Medtr5g088220.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 172 3e-43
Medtr7g088140.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 172 6e-43
Medtr3g116130.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 98 9e-21
Medtr3g116130.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 96 4e-20
Medtr2g026180.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 95 1e-19
Medtr2g026180.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 95 1e-19
Medtr2g026180.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 95 1e-19
Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC | chr4:43224367-... 94 1e-19
Medtr5g097580.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 94 2e-19
Medtr5g097580.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 94 3e-19
Medtr8g024520.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 91 2e-18
Medtr8g024520.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 91 2e-18
Medtr6g004810.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 90 2e-18
Medtr1g073690.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 89 6e-18
Medtr1g073690.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 89 6e-18
Medtr3g055990.1 | heterogeneous nuclear ribonucleoprotein 27C, p... 89 7e-18
Medtr3g055990.2 | heterogeneous nuclear ribonucleoprotein 27C, p... 89 8e-18
Medtr3g092490.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 88 1e-17
Medtr3g092490.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 88 1e-17
Medtr3g082650.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 88 1e-17
Medtr3g092490.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 87 2e-17
Medtr3g092490.4 | RNA-binding (RRM/RBD/RNP motif) family protein... 87 2e-17
Medtr3g027140.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 87 2e-17
Medtr4g035310.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 87 3e-17
Medtr5g017280.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 87 3e-17
Medtr5g017280.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 87 3e-17
Medtr5g017280.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 87 3e-17
Medtr4g035310.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 87 3e-17
Medtr5g017280.4 | RNA-binding (RRM/RBD/RNP motif) family protein... 87 3e-17
Medtr7g117495.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 86 4e-17
Medtr7g117495.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 86 4e-17
Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC | chr3:34381451-... 86 4e-17
Medtr3g065190.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 86 4e-17
Medtr5g064120.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 85 8e-17
Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 83 4e-16
Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 83 4e-16
Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 81 1e-15
Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC | chr3:34381440-... 81 1e-15
Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 80 3e-15
Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 80 3e-15
Medtr3g103420.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 79 9e-15
Medtr4g122650.1 | flowering time control FCA-like protein | HC |... 74 2e-13
Medtr4g124940.1 | nucleolysin TIAR-like protein | HC | chr4:5182... 74 3e-13
Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC | chr7:43324307-... 73 4e-13
Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 73 5e-13
Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 73 5e-13
Medtr4g070080.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 70 4e-12
Medtr4g070080.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 70 4e-12
Medtr3g109090.3 | nucleolysin TIAR-like protein | HC | chr3:5042... 69 5e-12
Medtr4g070190.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 69 6e-12
Medtr3g109090.1 | nucleolysin TIAR-like protein | HC | chr3:5042... 69 6e-12
Medtr3g109090.2 | nucleolysin TIAR-like protein | HC | chr3:5042... 69 6e-12
Medtr3g025880.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 69 8e-12
Medtr3g025880.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 69 8e-12
Medtr8g022050.1 | nucleolysin TIAR-like protein | HC | chr8:7704... 67 2e-11
Medtr7g102730.1 | polyadenylate-binding protein | HC | chr7:4165... 67 3e-11
Medtr4g070140.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 65 8e-11
Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 65 9e-11
Medtr1g092860.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 64 2e-10
Medtr8g092550.1 | CC1-like splicing factor | HC | chr8:38688579-... 64 2e-10
Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 63 4e-10
Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 63 4e-10
Medtr2g022950.1 | polyadenylate-binding protein RBP47B | HC | ch... 62 6e-10
Medtr3g095230.1 | CC1-like splicing factor | LC | chr3:43513030-... 62 1e-09
Medtr3g095230.2 | CC1-like splicing factor | LC | chr3:43513031-... 61 1e-09
Medtr3g095230.3 | CC1-like splicing factor | LC | chr3:43513031-... 61 1e-09
Medtr2g022950.4 | polyadenylate-binding protein RBP47B | HC | ch... 61 1e-09
Medtr2g022950.3 | polyadenylate-binding protein RBP47B | HC | ch... 61 1e-09
Medtr7g105260.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 61 1e-09
Medtr2g022950.2 | polyadenylate-binding protein RBP47B | HC | ch... 60 3e-09
Medtr3g084040.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 60 3e-09
Medtr2g097960.1 | polyadenylate-binding protein RBP47B | HC | ch... 59 6e-09
Medtr3g448370.3 | RNA recognition motif 2 in plant MEI2-like pro... 59 7e-09
Medtr3g448370.5 | RNA recognition motif 2 in plant MEI2-like pro... 59 9e-09
Medtr4g109540.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 9e-09
Medtr4g085540.1 | polyadenylate-binding protein | HC | chr4:3341... 58 1e-08
Medtr5g029900.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 58 1e-08
Medtr3g448370.4 | RNA recognition motif 2 in plant MEI2-like pro... 58 1e-08
Medtr3g448370.1 | RNA recognition motif 2 in plant MEI2-like pro... 58 1e-08
Medtr3g448370.2 | RNA recognition motif 2 in plant MEI2-like pro... 58 1e-08
Medtr4g063560.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 58 1e-08
Medtr7g109810.2 | flowering time control FCA-like protein | HC |... 58 1e-08
Medtr3g102040.1 | polyadenylate-binding protein | HC | chr3:4701... 58 2e-08
Medtr7g107580.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 57 2e-08
Medtr7g109810.1 | flowering time control FCA-like protein | HC |... 57 2e-08
Medtr7g107580.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 57 2e-08
Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 57 2e-08
Medtr1g019150.1 | polyadenylate-binding protein | HC | chr1:5708... 57 2e-08
Medtr7g107580.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 57 2e-08
Medtr1g061870.1 | polyadenylate-binding plant protein, putative ... 57 2e-08
Medtr6g040070.1 | DEAD/DEAH-box helicase | HC | chr6:14397151-14... 57 2e-08
Medtr2g049640.2 | RNA recognition motif 2 in plant MEI2-like pro... 57 3e-08
Medtr2g049640.1 | RNA recognition motif 2 in plant MEI2-like pro... 57 3e-08
Medtr2g026180.4 | RNA-binding (RRM/RBD/RNP motif) family protein... 57 4e-08
Medtr4g131970.1 | polyadenylate-binding protein RBP47C | HC | ch... 56 5e-08
Medtr3g101370.1 | polyadenylate-binding protein RBP47C | HC | ch... 56 5e-08
Medtr1g020080.1 | polyadenylate-binding protein RBP47C | HC | ch... 55 7e-08
Medtr3g101370.2 | polyadenylate-binding protein RBP47C | HC | ch... 55 8e-08
Medtr4g036415.1 | splicing factor-like protein | HC | chr4:13104... 55 9e-08
Medtr6g040190.1 | polyadenylate-binding protein | LC | chr6:1440... 54 2e-07
Medtr7g099940.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 2e-07
Medtr4g081520.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 2e-07
Medtr3g029580.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 54 3e-07
Medtr6g477870.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 53 3e-07
Medtr1g097440.2 | polyadenylate-binding protein | HC | chr1:4396... 53 4e-07
Medtr1g097440.1 | polyadenylate-binding protein | HC | chr1:4396... 53 4e-07
Medtr4g086600.1 | polyadenylate-binding protein RBP47B | HC | ch... 53 4e-07
Medtr1g020080.2 | polyadenylate-binding protein RBP47C | HC | ch... 53 5e-07
Medtr7g118120.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 52 8e-07
Medtr7g118120.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 52 8e-07
Medtr7g118120.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 52 8e-07
Medtr7g094660.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 9e-07
Medtr5g044970.1 | peptidyl-prolyl cis-trans isomerase E-like pro... 52 9e-07
Medtr3g014000.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 51 2e-06
Medtr1g115375.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 3e-06
Medtr4g081510.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 50 4e-06
Medtr4g094235.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 4e-06
Medtr4g094235.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 4e-06
Medtr4g094235.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 4e-06
Medtr4g094235.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 4e-06
Medtr3g029580.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 4e-06
Medtr4g052940.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 49 6e-06
Medtr4g052940.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 49 6e-06
Medtr4g052940.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 49 6e-06
Medtr4g052940.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 49 9e-06
>Medtr4g088010.1 | heterogeneous nuclear ribonucleoprotein | HC |
chr4:34502474-34498575 | 20130731
Length = 356
Score = 202 bits (513), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 106/261 (40%), Positives = 158/261 (60%), Gaps = 21/261 (8%)
Query: 3 DLKKRKLEEATNGGFTS---------------VEDLRLLIEPLAKPQLVDLLAKLGSQYP 47
+ KKRK EE NG S +D+R +++P + QL+DLL Q+P
Sbjct: 2 EFKKRKTEE--NGDANSPPSSIDAAVIPPALTSDDIRKILQPFTQEQLLDLLQSASLQHP 59
Query: 48 SIAEEIKSIASADPVHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGY 107
I + ++S+A D RKLFVRGL+ T++ETL F +G+++E VI+DKATG+S+GY
Sbjct: 60 DILDAVRSVADRDTTRRKLFVRGLSGETTTETLRTVFSSYGDLDEAIVIFDKATGRSKGY 119
Query: 108 GFITYKNMESTQAALRAPSKLIDGRLAACNLACEGLSGPSSALDVSQRKLYIGSLSPEVT 167
GF+ Y++++ AL+ PSK IDGR+ LA G S+ DVS RK+++G++ EV+
Sbjct: 120 GFVVYRHVDGAVLALKEPSKKIDGRMTVTQLAAAG----STGGDVSSRKVFVGNVPFEVS 175
Query: 168 SEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPEKTLGGRTIIV 227
+E LLS F ++GEIEEG + +DK + +RGF F YKT E AK ++ + KT+ G +I
Sbjct: 176 AESLLSEFSKYGEIEEGPLGFDKASGKTRGFAFFVYKTEEGAKNSVAESMKTVDGHQVIC 235
Query: 228 KFAGAHKGKTGQPPFPAGVPM 248
KFA +K P+G P+
Sbjct: 236 KFAVDNKKPKPVGQNPSGFPV 256
>Medtr8g463890.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:22547309-22542060 | 20130731
Length = 445
Score = 192 bits (488), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 103/250 (41%), Positives = 150/250 (60%), Gaps = 10/250 (4%)
Query: 1 MEDLKKRKLEEATNGGFTSVEDL-----RLLIEPLAKPQLVDLLAKLGSQYPSIAEEIKS 55
M+ KKRKL+E GG + L R LIE QL+++L ++P + +++
Sbjct: 5 MDPTKKRKLDENGFGGESDHLKLSPSEGRKLIERFTPDQLINILQDAVVRHPDVLSAVRA 64
Query: 56 IASADPVHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNM 115
+ D RKLF+RGL W+T++E L + F +GE+EE VI DKATGKS+GYGF+T+ ++
Sbjct: 65 VVDPDISRRKLFIRGLGWDTTTEGLRSLFSTYGELEEAIVIVDKATGKSKGYGFVTFLHV 124
Query: 116 ESTQAALRAPSKLIDGRLAACNLACEGLSGP-SSALDVSQRKLYIGSLSPEVTSEVLLSF 174
+ ALR PSK IDGR+ LA G SG ++A DV+QRK+Y+ ++ P++ + LL+
Sbjct: 125 DGALLALREPSKRIDGRVTVTQLAAAGNSGSNTNAADVAQRKIYVSNVPPDLPGDKLLAH 184
Query: 175 FGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPEKTLGGRTIIVKFA---- 230
F +GEIEEG + +DK T S+GF YKT E A A+ +P K + GR + K A
Sbjct: 185 FSIYGEIEEGPLGFDKQTGRSKGFALFVYKTPEGANAAVSEPVKNVEGRQLNCKLAITDG 244
Query: 231 GAHKGKTGQP 240
G +G G P
Sbjct: 245 GKQQGMRGGP 254
>Medtr7g088140.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304385-34297881 | 20130731
Length = 490
Score = 173 bits (438), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 84/217 (38%), Positives = 127/217 (58%), Gaps = 12/217 (5%)
Query: 21 EDLRLLIEPLAKPQLVDLLAKLGSQYPSIAEEIKSIASADPVHRKLFVRGLAWNTSSETL 80
E ++ L+EP +K Q+ LL + S++ +A+ I+ IA D HRK+FV GL W+T+S TL
Sbjct: 84 EPIQKLLEPFSKEQISSLLCEAASKHRDVADRIRKIADGDASHRKIFVHGLGWDTTSATL 143
Query: 81 CAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALRAPSKLIDGRLAACNLAC 140
AF ++GEIE+ + DK +GKS+GYGFI +K + AL+ P K I R+ AC LA
Sbjct: 144 INAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGARNALKEPQKKIGNRMTACQLAS 203
Query: 141 EG------------LSGPSSALDVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAY 188
G + + +QRK+YI ++ PE+ ++ L FF R GEIEEG +
Sbjct: 204 IGPVQQTPVVAAAPAPLVVAGSEYTQRKIYISNVGPELDAQKLFGFFSRFGEIEEGPLGL 263
Query: 189 DKDTNVSRGFGFVTYKTTEAAKKAIDDPEKTLGGRTI 225
DK T +GF YK+ E+A++A+++P K G +
Sbjct: 264 DKVTGKPKGFCLFVYKSAESARRALEEPHKEFEGHIL 300
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 47/80 (58%)
Query: 151 DVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAK 210
D S RK+++ L + TS L++ F ++GEIE+ DK + S+G+GF+ +K A+
Sbjct: 123 DASHRKIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGAR 182
Query: 211 KAIDDPEKTLGGRTIIVKFA 230
A+ +P+K +G R + A
Sbjct: 183 NALKEPQKKIGNRMTACQLA 202
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 42/81 (51%)
Query: 62 VHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAA 121
RK+++ + ++ L F GEIEEG + DK TGK +G+ YK+ ES + A
Sbjct: 228 TQRKIYISNVGPELDAQKLFGFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSAESARRA 287
Query: 122 LRAPSKLIDGRLAACNLACEG 142
L P K +G + C A +G
Sbjct: 288 LEEPHKEFEGHILHCQKAIDG 308
>Medtr7g088140.5 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304385-34297914 | 20130731
Length = 490
Score = 173 bits (438), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 84/217 (38%), Positives = 127/217 (58%), Gaps = 12/217 (5%)
Query: 21 EDLRLLIEPLAKPQLVDLLAKLGSQYPSIAEEIKSIASADPVHRKLFVRGLAWNTSSETL 80
E ++ L+EP +K Q+ LL + S++ +A+ I+ IA D HRK+FV GL W+T+S TL
Sbjct: 84 EPIQKLLEPFSKEQISSLLCEAASKHRDVADRIRKIADGDASHRKIFVHGLGWDTTSATL 143
Query: 81 CAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALRAPSKLIDGRLAACNLAC 140
AF ++GEIE+ + DK +GKS+GYGFI +K + AL+ P K I R+ AC LA
Sbjct: 144 INAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGARNALKEPQKKIGNRMTACQLAS 203
Query: 141 EG------------LSGPSSALDVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAY 188
G + + +QRK+YI ++ PE+ ++ L FF R GEIEEG +
Sbjct: 204 IGPVQQTPVVAAAPAPLVVAGSEYTQRKIYISNVGPELDAQKLFGFFSRFGEIEEGPLGL 263
Query: 189 DKDTNVSRGFGFVTYKTTEAAKKAIDDPEKTLGGRTI 225
DK T +GF YK+ E+A++A+++P K G +
Sbjct: 264 DKVTGKPKGFCLFVYKSAESARRALEEPHKEFEGHIL 300
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 47/80 (58%)
Query: 151 DVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAK 210
D S RK+++ L + TS L++ F ++GEIE+ DK + S+G+GF+ +K A+
Sbjct: 123 DASHRKIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGAR 182
Query: 211 KAIDDPEKTLGGRTIIVKFA 230
A+ +P+K +G R + A
Sbjct: 183 NALKEPQKKIGNRMTACQLA 202
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 42/81 (51%)
Query: 62 VHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAA 121
RK+++ + ++ L F GEIEEG + DK TGK +G+ YK+ ES + A
Sbjct: 228 TQRKIYISNVGPELDAQKLFGFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSAESARRA 287
Query: 122 LRAPSKLIDGRLAACNLACEG 142
L P K +G + C A +G
Sbjct: 288 LEEPHKEFEGHILHCQKAIDG 308
>Medtr7g088140.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304385-34297914 | 20130731
Length = 490
Score = 173 bits (438), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 84/217 (38%), Positives = 127/217 (58%), Gaps = 12/217 (5%)
Query: 21 EDLRLLIEPLAKPQLVDLLAKLGSQYPSIAEEIKSIASADPVHRKLFVRGLAWNTSSETL 80
E ++ L+EP +K Q+ LL + S++ +A+ I+ IA D HRK+FV GL W+T+S TL
Sbjct: 84 EPIQKLLEPFSKEQISSLLCEAASKHRDVADRIRKIADGDASHRKIFVHGLGWDTTSATL 143
Query: 81 CAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALRAPSKLIDGRLAACNLAC 140
AF ++GEIE+ + DK +GKS+GYGFI +K + AL+ P K I R+ AC LA
Sbjct: 144 INAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGARNALKEPQKKIGNRMTACQLAS 203
Query: 141 EG------------LSGPSSALDVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAY 188
G + + +QRK+YI ++ PE+ ++ L FF R GEIEEG +
Sbjct: 204 IGPVQQTPVVAAAPAPLVVAGSEYTQRKIYISNVGPELDAQKLFGFFSRFGEIEEGPLGL 263
Query: 189 DKDTNVSRGFGFVTYKTTEAAKKAIDDPEKTLGGRTI 225
DK T +GF YK+ E+A++A+++P K G +
Sbjct: 264 DKVTGKPKGFCLFVYKSAESARRALEEPHKEFEGHIL 300
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 47/80 (58%)
Query: 151 DVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAK 210
D S RK+++ L + TS L++ F ++GEIE+ DK + S+G+GF+ +K A+
Sbjct: 123 DASHRKIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGAR 182
Query: 211 KAIDDPEKTLGGRTIIVKFA 230
A+ +P+K +G R + A
Sbjct: 183 NALKEPQKKIGNRMTACQLA 202
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 42/81 (51%)
Query: 62 VHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAA 121
RK+++ + ++ L F GEIEEG + DK TGK +G+ YK+ ES + A
Sbjct: 228 TQRKIYISNVGPELDAQKLFGFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSAESARRA 287
Query: 122 LRAPSKLIDGRLAACNLACEG 142
L P K +G + C A +G
Sbjct: 288 LEEPHKEFEGHILHCQKAIDG 308
>Medtr7g088140.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304385-34297881 | 20130731
Length = 490
Score = 173 bits (438), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 84/217 (38%), Positives = 127/217 (58%), Gaps = 12/217 (5%)
Query: 21 EDLRLLIEPLAKPQLVDLLAKLGSQYPSIAEEIKSIASADPVHRKLFVRGLAWNTSSETL 80
E ++ L+EP +K Q+ LL + S++ +A+ I+ IA D HRK+FV GL W+T+S TL
Sbjct: 84 EPIQKLLEPFSKEQISSLLCEAASKHRDVADRIRKIADGDASHRKIFVHGLGWDTTSATL 143
Query: 81 CAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALRAPSKLIDGRLAACNLAC 140
AF ++GEIE+ + DK +GKS+GYGFI +K + AL+ P K I R+ AC LA
Sbjct: 144 INAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGARNALKEPQKKIGNRMTACQLAS 203
Query: 141 EG------------LSGPSSALDVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAY 188
G + + +QRK+YI ++ PE+ ++ L FF R GEIEEG +
Sbjct: 204 IGPVQQTPVVAAAPAPLVVAGSEYTQRKIYISNVGPELDAQKLFGFFSRFGEIEEGPLGL 263
Query: 189 DKDTNVSRGFGFVTYKTTEAAKKAIDDPEKTLGGRTI 225
DK T +GF YK+ E+A++A+++P K G +
Sbjct: 264 DKVTGKPKGFCLFVYKSAESARRALEEPHKEFEGHIL 300
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 47/80 (58%)
Query: 151 DVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAK 210
D S RK+++ L + TS L++ F ++GEIE+ DK + S+G+GF+ +K A+
Sbjct: 123 DASHRKIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGAR 182
Query: 211 KAIDDPEKTLGGRTIIVKFA 230
A+ +P+K +G R + A
Sbjct: 183 NALKEPQKKIGNRMTACQLA 202
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 42/81 (51%)
Query: 62 VHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAA 121
RK+++ + ++ L F GEIEEG + DK TGK +G+ YK+ ES + A
Sbjct: 228 TQRKIYISNVGPELDAQKLFGFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSAESARRA 287
Query: 122 LRAPSKLIDGRLAACNLACEG 142
L P K +G + C A +G
Sbjct: 288 LEEPHKEFEGHILHCQKAIDG 308
>Medtr5g088220.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:38253257-38251764 | 20130731
Length = 497
Score = 172 bits (437), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 79/210 (37%), Positives = 126/210 (60%), Gaps = 5/210 (2%)
Query: 26 LIEPLAKPQLVDLLAKLGSQYPSIAEEIKSIASADPVHRKLFVRGLAWNTSSETLCAAFQ 85
L+EP K QL L+ + +YP ++E ++ +A DP HRK+FV GL W+ ++ETL F
Sbjct: 127 LLEPFTKEQLHALVKQAVEKYPDLSENVRQLADVDPAHRKIFVHGLGWDATAETLTTTFS 186
Query: 86 EHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALRAPSKLIDGRLAACNLACEGLSG 145
++GEIE+ + DKA+GKS+GY FI +K+ + AL+ P K+I R +C LA G
Sbjct: 187 KYGEIEDCKAVTDKASGKSKGYAFILFKHRTGCRRALKQPQKVIGNRTTSCQLASAGPVP 246
Query: 146 PSSAL-----DVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGF 200
+ +QRK+++ ++S ++ + LL FF + GE+++G + DK T +GF
Sbjct: 247 APPPNAPPVSEYTQRKIFVSNVSSDIDPQKLLEFFKQFGEVDDGPLGLDKATGKPKGFAL 306
Query: 201 VTYKTTEAAKKAIDDPEKTLGGRTIIVKFA 230
YKT E+AKKA+++P K G T+ + A
Sbjct: 307 FVYKTVESAKKALEEPNKVFEGHTLYCQKA 336
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 48/84 (57%)
Query: 62 VHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAA 121
RK+FV ++ + + L F++ GE+++G + DKATGK +G+ YK +ES + A
Sbjct: 259 TQRKIFVSNVSSDIDPQKLLEFFKQFGEVDDGPLGLDKATGKPKGFALFVYKTVESAKKA 318
Query: 122 LRAPSKLIDGRLAACNLACEGLSG 145
L P+K+ +G C A +G G
Sbjct: 319 LEEPNKVFEGHTLYCQKAVDGPKG 342
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 48/83 (57%)
Query: 150 LDVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAA 209
+D + RK+++ L + T+E L + F ++GEIE+ DK + S+G+ F+ +K
Sbjct: 160 VDPAHRKIFVHGLGWDATAETLTTTFSKYGEIEDCKAVTDKASGKSKGYAFILFKHRTGC 219
Query: 210 KKAIDDPEKTLGGRTIIVKFAGA 232
++A+ P+K +G RT + A A
Sbjct: 220 RRALKQPQKVIGNRTTSCQLASA 242
>Medtr5g088220.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:38253257-38251764 | 20130731
Length = 497
Score = 172 bits (437), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 79/210 (37%), Positives = 126/210 (60%), Gaps = 5/210 (2%)
Query: 26 LIEPLAKPQLVDLLAKLGSQYPSIAEEIKSIASADPVHRKLFVRGLAWNTSSETLCAAFQ 85
L+EP K QL L+ + +YP ++E ++ +A DP HRK+FV GL W+ ++ETL F
Sbjct: 127 LLEPFTKEQLHALVKQAVEKYPDLSENVRQLADVDPAHRKIFVHGLGWDATAETLTTTFS 186
Query: 86 EHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALRAPSKLIDGRLAACNLACEGLSG 145
++GEIE+ + DKA+GKS+GY FI +K+ + AL+ P K+I R +C LA G
Sbjct: 187 KYGEIEDCKAVTDKASGKSKGYAFILFKHRTGCRRALKQPQKVIGNRTTSCQLASAGPVP 246
Query: 146 PSSAL-----DVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGF 200
+ +QRK+++ ++S ++ + LL FF + GE+++G + DK T +GF
Sbjct: 247 APPPNAPPVSEYTQRKIFVSNVSSDIDPQKLLEFFKQFGEVDDGPLGLDKATGKPKGFAL 306
Query: 201 VTYKTTEAAKKAIDDPEKTLGGRTIIVKFA 230
YKT E+AKKA+++P K G T+ + A
Sbjct: 307 FVYKTVESAKKALEEPNKVFEGHTLYCQKA 336
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 48/84 (57%)
Query: 62 VHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAA 121
RK+FV ++ + + L F++ GE+++G + DKATGK +G+ YK +ES + A
Sbjct: 259 TQRKIFVSNVSSDIDPQKLLEFFKQFGEVDDGPLGLDKATGKPKGFALFVYKTVESAKKA 318
Query: 122 LRAPSKLIDGRLAACNLACEGLSG 145
L P+K+ +G C A +G G
Sbjct: 319 LEEPNKVFEGHTLYCQKAVDGPKG 342
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 48/83 (57%)
Query: 150 LDVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAA 209
+D + RK+++ L + T+E L + F ++GEIE+ DK + S+G+ F+ +K
Sbjct: 160 VDPAHRKIFVHGLGWDATAETLTTTFSKYGEIEDCKAVTDKASGKSKGYAFILFKHRTGC 219
Query: 210 KKAIDDPEKTLGGRTIIVKFAGA 232
++A+ P+K +G RT + A A
Sbjct: 220 RRALKQPQKVIGNRTTSCQLASA 242
>Medtr5g088220.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:38253257-38251764 | 20130731
Length = 497
Score = 172 bits (437), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 79/210 (37%), Positives = 126/210 (60%), Gaps = 5/210 (2%)
Query: 26 LIEPLAKPQLVDLLAKLGSQYPSIAEEIKSIASADPVHRKLFVRGLAWNTSSETLCAAFQ 85
L+EP K QL L+ + +YP ++E ++ +A DP HRK+FV GL W+ ++ETL F
Sbjct: 127 LLEPFTKEQLHALVKQAVEKYPDLSENVRQLADVDPAHRKIFVHGLGWDATAETLTTTFS 186
Query: 86 EHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALRAPSKLIDGRLAACNLACEGLSG 145
++GEIE+ + DKA+GKS+GY FI +K+ + AL+ P K+I R +C LA G
Sbjct: 187 KYGEIEDCKAVTDKASGKSKGYAFILFKHRTGCRRALKQPQKVIGNRTTSCQLASAGPVP 246
Query: 146 PSSAL-----DVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGF 200
+ +QRK+++ ++S ++ + LL FF + GE+++G + DK T +GF
Sbjct: 247 APPPNAPPVSEYTQRKIFVSNVSSDIDPQKLLEFFKQFGEVDDGPLGLDKATGKPKGFAL 306
Query: 201 VTYKTTEAAKKAIDDPEKTLGGRTIIVKFA 230
YKT E+AKKA+++P K G T+ + A
Sbjct: 307 FVYKTVESAKKALEEPNKVFEGHTLYCQKA 336
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 48/84 (57%)
Query: 62 VHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAA 121
RK+FV ++ + + L F++ GE+++G + DKATGK +G+ YK +ES + A
Sbjct: 259 TQRKIFVSNVSSDIDPQKLLEFFKQFGEVDDGPLGLDKATGKPKGFALFVYKTVESAKKA 318
Query: 122 LRAPSKLIDGRLAACNLACEGLSG 145
L P+K+ +G C A +G G
Sbjct: 319 LEEPNKVFEGHTLYCQKAVDGPKG 342
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 48/83 (57%)
Query: 150 LDVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAA 209
+D + RK+++ L + T+E L + F ++GEIE+ DK + S+G+ F+ +K
Sbjct: 160 VDPAHRKIFVHGLGWDATAETLTTTFSKYGEIEDCKAVTDKASGKSKGYAFILFKHRTGC 219
Query: 210 KKAIDDPEKTLGGRTIIVKFAGA 232
++A+ P+K +G RT + A A
Sbjct: 220 RRALKQPQKVIGNRTTSCQLASA 242
>Medtr7g088140.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304246-34300290 | 20130731
Length = 492
Score = 172 bits (435), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 84/217 (38%), Positives = 127/217 (58%), Gaps = 12/217 (5%)
Query: 21 EDLRLLIEPLAKPQLVDLLAKLGSQYPSIAEEIKSIASADPVHRKLFVRGLAWNTSSETL 80
E ++ L+EP +K Q+ LL + S++ +A+ I+ IA D HRK+FV GL W+T+S TL
Sbjct: 84 EPIQKLLEPFSKEQISSLLCEAASKHRDVADRIRKIADGDASHRKIFVHGLGWDTTSATL 143
Query: 81 CAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALRAPSKLIDGRLAACNLAC 140
AF ++GEIE+ + DK +GKS+GYGFI +K + AL+ P K I R+ AC LA
Sbjct: 144 INAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGARNALKEPQKKIGNRMTACQLAS 203
Query: 141 EG------------LSGPSSALDVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAY 188
G + + +QRK+YI ++ PE+ ++ L FF R GEIEEG +
Sbjct: 204 IGPVQQTPVVAAAPAPLVVAGSEYTQRKIYISNVGPELDAQKLFGFFSRFGEIEEGPLGL 263
Query: 189 DKDTNVSRGFGFVTYKTTEAAKKAIDDPEKTLGGRTI 225
DK T +GF YK+ E+A++A+++P K G +
Sbjct: 264 DKVTGKPKGFCLFVYKSAESARRALEEPHKEFEGHIL 300
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 47/80 (58%)
Query: 151 DVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAK 210
D S RK+++ L + TS L++ F ++GEIE+ DK + S+G+GF+ +K A+
Sbjct: 123 DASHRKIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGAR 182
Query: 211 KAIDDPEKTLGGRTIIVKFA 230
A+ +P+K +G R + A
Sbjct: 183 NALKEPQKKIGNRMTACQLA 202
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 42/80 (52%)
Query: 63 HRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAAL 122
RK+++ + ++ L F GEIEEG + DK TGK +G+ YK+ ES + AL
Sbjct: 229 QRKIYISNVGPELDAQKLFGFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSAESARRAL 288
Query: 123 RAPSKLIDGRLAACNLACEG 142
P K +G + C A +G
Sbjct: 289 EEPHKEFEGHILHCQKAIDG 308
>Medtr3g116130.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:54301450-54296178 | 20130731
Length = 281
Score = 98.2 bits (243), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 85/160 (53%), Gaps = 8/160 (5%)
Query: 59 ADPVHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMEST 118
D + K+FV GLAW T SET+ F++ G+I E VI DK TG+S+GYGF+T+++ E+
Sbjct: 24 GDTTYTKVFVGGLAWETQSETMRRYFEQFGDILEAVVITDKNTGRSKGYGFVTFRDPEAA 83
Query: 119 QAALRAPSKLIDGRLAACNLACEG--LSGPSSALDVSQRKLYIGSLSPEVTSEVLLSFFG 176
+ A PS +IDGR A CNLA G P S V Y+GSL P + V G
Sbjct: 84 RRACADPSPVIDGRRANCNLASHGRPRGPPISYGRVRPASPYVGSLQPARGAYV-----G 138
Query: 177 RHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDP 216
+G + S Y + V +G+ TY + + +P
Sbjct: 139 GYGYQQPLSYGYQQGM-VYPPYGYTTYGPEYVYPQGMYNP 177
>Medtr3g116130.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:54300708-54296502 | 20130731
Length = 372
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 85/160 (53%), Gaps = 8/160 (5%)
Query: 59 ADPVHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMEST 118
D + K+FV GLAW T SET+ F++ G+I E VI DK TG+S+GYGF+T+++ E+
Sbjct: 24 GDTTYTKVFVGGLAWETQSETMRRYFEQFGDILEAVVITDKNTGRSKGYGFVTFRDPEAA 83
Query: 119 QAALRAPSKLIDGRLAACNLACEG--LSGPSSALDVSQRKLYIGSLSPEVTSEVLLSFFG 176
+ A PS +IDGR A CNLA G P S V Y+GSL P + V G
Sbjct: 84 RRACADPSPVIDGRRANCNLASHGRPRGPPISYGRVRPASPYVGSLQPARGAYV-----G 138
Query: 177 RHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDP 216
+G + S Y + V +G+ TY + + +P
Sbjct: 139 GYGYQQPLSYGYQQGM-VYPPYGYTTYGPEYVYPQGMYNP 177
>Medtr2g026180.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465398-9461370 | 20130731
Length = 481
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 91/181 (50%), Gaps = 19/181 (10%)
Query: 65 KLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALRA 124
KLF+ G++W+T+ + L FQ G++ E ++ D+ TG++RG+GF+ + + S +
Sbjct: 5 KLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFAD-PSVAERVVM 63
Query: 125 PSKLIDGR---------------LAACNLACEGLSGPSSALDVSQRKLYIGSLSPEVTSE 169
+IDGR N + G P+ + +K+++G L+ VT
Sbjct: 64 EKHVIDGRTVEAKKAVPRDDQNVFTRSNSSSHGSPAPTP---IRTKKIFVGGLASTVTES 120
Query: 170 VLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPEKTLGGRTIIVKF 229
++F + G I + V YD +T RGFGF+TY + EA +K + L G+ + VK
Sbjct: 121 DFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHELNGKMVEVKR 180
Query: 230 A 230
A
Sbjct: 181 A 181
>Medtr2g026180.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465402-9461271 | 20130731
Length = 481
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 91/181 (50%), Gaps = 19/181 (10%)
Query: 65 KLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALRA 124
KLF+ G++W+T+ + L FQ G++ E ++ D+ TG++RG+GF+ + + S +
Sbjct: 5 KLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFAD-PSVAERVVM 63
Query: 125 PSKLIDGR---------------LAACNLACEGLSGPSSALDVSQRKLYIGSLSPEVTSE 169
+IDGR N + G P+ + +K+++G L+ VT
Sbjct: 64 EKHVIDGRTVEAKKAVPRDDQNVFTRSNSSSHGSPAPTP---IRTKKIFVGGLASTVTES 120
Query: 170 VLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPEKTLGGRTIIVKF 229
++F + G I + V YD +T RGFGF+TY + EA +K + L G+ + VK
Sbjct: 121 DFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHELNGKMVEVKR 180
Query: 230 A 230
A
Sbjct: 181 A 181
>Medtr2g026180.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465359-9461307 | 20130731
Length = 481
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 91/181 (50%), Gaps = 19/181 (10%)
Query: 65 KLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALRA 124
KLF+ G++W+T+ + L FQ G++ E ++ D+ TG++RG+GF+ + + S +
Sbjct: 5 KLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFAD-PSVAERVVM 63
Query: 125 PSKLIDGR---------------LAACNLACEGLSGPSSALDVSQRKLYIGSLSPEVTSE 169
+IDGR N + G P+ + +K+++G L+ VT
Sbjct: 64 EKHVIDGRTVEAKKAVPRDDQNVFTRSNSSSHGSPAPTP---IRTKKIFVGGLASTVTES 120
Query: 170 VLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPEKTLGGRTIIVKF 229
++F + G I + V YD +T RGFGF+TY + EA +K + L G+ + VK
Sbjct: 121 DFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHELNGKMVEVKR 180
Query: 230 A 230
A
Sbjct: 181 A 181
>Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC |
chr4:43224367-43221650 | 20130731
Length = 300
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 88/172 (51%), Gaps = 8/172 (4%)
Query: 65 KLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALRA 124
K+FV L ++ SE L F++ G +E VIY++ T +SRG+GF+T E + A+
Sbjct: 123 KIFVGNLPFDVDSEKLAQLFEQSGTVEIAEVIYNRDTDRSRGFGFVTMSTSEEVERAVNK 182
Query: 125 PSKL-IDGRLAACNLAC-EG---LSGPSSALDVSQRKLYIGSLSPEVTSEVLLSFFGRHG 179
S +DGRL N A G L P + S + Y+G+L +V + L F HG
Sbjct: 183 FSGFELDGRLLTVNKAAPRGTPRLRQPRTF--NSGLRAYVGNLPWDVDNSSLEQLFSEHG 240
Query: 180 EIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPE-KTLGGRTIIVKFA 230
++E V YD++T SRGFGFVT AI + ++ GR I V A
Sbjct: 241 KVESAQVVYDRETGRSRGFGFVTMSNEAEMNDAIAALDGQSFNGRAIRVNVA 292
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 45/80 (56%), Gaps = 5/80 (6%)
Query: 65 KLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKN---MESTQAA 121
+ +V L W+ + +L F EHG++E V+YD+ TG+SRG+GF+T N M AA
Sbjct: 217 RAYVGNLPWDVDNSSLEQLFSEHGKVESAQVVYDRETGRSRGFGFVTMSNEAEMNDAIAA 276
Query: 122 LRAPSKLIDGRLAACNLACE 141
L S +GR N+A E
Sbjct: 277 LDGQS--FNGRAIRVNVAEE 294
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 51/100 (51%), Gaps = 12/100 (12%)
Query: 156 KLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDD 215
K+++G+L +V SE L F + G +E V Y++DT+ SRGFGFVT T+E ++A++
Sbjct: 123 KIFVGNLPFDVDSEKLAQLFEQSGTVEIAEVIYNRDTDRSRGFGFVTMSTSEEVERAVNK 182
Query: 216 PEK-TLGGRTIIVKFAGAHKGKTGQPPFPAGVPMAALPMT 254
L GR + V A P G P P T
Sbjct: 183 FSGFELDGRLLTVNKAA-----------PRGTPRLRQPRT 211
>Medtr5g097580.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:42749843-42753184 | 20130731
Length = 493
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 91/176 (51%), Gaps = 11/176 (6%)
Query: 65 KLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALRA 124
KLF+ G++W+T+ E L F +GE++E ++ D+ TG++RG+GF+ + + ++
Sbjct: 7 KLFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVADIVVQE 66
Query: 125 PSKLIDGRLAACNLAC-----EGLSGPSSALDVS-----QRKLYIGSLSPEVTSEVLLSF 174
IDGR+ A LS S ++ S RK+++G L+ VT +
Sbjct: 67 KHN-IDGRMVEAKKAVPRDDQNVLSRTSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKY 125
Query: 175 FGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPEKTLGGRTIIVKFA 230
F + G I + V YD +T RGFGF+TY + EA + + L G+ + VK A
Sbjct: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDQVLLKTFHELNGKMVEVKRA 181
>Medtr5g097580.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:42749843-42754792 | 20130731
Length = 479
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 91/176 (51%), Gaps = 11/176 (6%)
Query: 65 KLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALRA 124
KLF+ G++W+T+ E L F +GE++E ++ D+ TG++RG+GF+ + + ++
Sbjct: 7 KLFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVADIVVQE 66
Query: 125 PSKLIDGRLAACNLAC-----EGLSGPSSALDVS-----QRKLYIGSLSPEVTSEVLLSF 174
IDGR+ A LS S ++ S RK+++G L+ VT +
Sbjct: 67 KHN-IDGRMVEAKKAVPRDDQNVLSRTSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKY 125
Query: 175 FGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPEKTLGGRTIIVKFA 230
F + G I + V YD +T RGFGF+TY + EA + + L G+ + VK A
Sbjct: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDQVLLKTFHELNGKMVEVKRA 181
>Medtr8g024520.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:9035953-9039164 | 20130731
Length = 282
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/83 (51%), Positives = 55/83 (66%)
Query: 60 DPVHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQ 119
D KLFV GLAW T ET+ F++ GEI E VI DK TG+S+GYGF+T+K+ E+
Sbjct: 21 DTTFTKLFVGGLAWETQRETMRMYFEQFGEILEAVVITDKYTGRSKGYGFVTFKDPEAAI 80
Query: 120 AALRAPSKLIDGRLAACNLACEG 142
A + PS +IDGR A CN+A G
Sbjct: 81 RACQNPSPVIDGRRANCNIASLG 103
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 86/192 (44%), Gaps = 23/192 (11%)
Query: 151 DVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAK 210
D + KL++G L+ E E + +F + GEI E V DK T S+G+GFVT+K EAA
Sbjct: 21 DTTFTKLFVGGLAWETQRETMRMYFEQFGEILEAVVITDKYTGRSKGYGFVTFKDPEAAI 80
Query: 211 KAIDDPEKTLGGRTIIVKFA--GAHKGKT-----GQPPFPAGVPMAALPMTPGYVQSGKP 263
+A +P + GR A GA+K ++ G+ P GV +P P + S
Sbjct: 81 RACQNPSPVIDGRRANCNIASLGANKNRSLTLHHGRFRPPHGV----VPSVPYHGSSST- 135
Query: 264 HISSAPSVGYTYPQPVAPYPLASYPIPPLTAPP--SAYPAQGQVPYAPVSAKKDQLGVPP 321
+ P+ YT+ P + Y + Y L + Y Q PY P +G+
Sbjct: 136 -VFHQPTRQYTF--PYSAYGYSGYSQDTLYPANYYNVYGVQQYSPYYPAVGASGAMGLV- 191
Query: 322 TQPVGMNKYPYY 333
N YPYY
Sbjct: 192 -----QNMYPYY 198
>Medtr8g024520.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:9035953-9039164 | 20130731
Length = 280
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/83 (51%), Positives = 55/83 (66%)
Query: 60 DPVHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQ 119
D KLFV GLAW T ET+ F++ GEI E VI DK TG+S+GYGF+T+K+ E+
Sbjct: 21 DTTFTKLFVGGLAWETQRETMRMYFEQFGEILEAVVITDKYTGRSKGYGFVTFKDPEAAI 80
Query: 120 AALRAPSKLIDGRLAACNLACEG 142
A + PS +IDGR A CN+A G
Sbjct: 81 RACQNPSPVIDGRRANCNIASLG 103
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 86/192 (44%), Gaps = 23/192 (11%)
Query: 151 DVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAK 210
D + KL++G L+ E E + +F + GEI E V DK T S+G+GFVT+K EAA
Sbjct: 21 DTTFTKLFVGGLAWETQRETMRMYFEQFGEILEAVVITDKYTGRSKGYGFVTFKDPEAAI 80
Query: 211 KAIDDPEKTLGGRTIIVKFA--GAHKGKT-----GQPPFPAGVPMAALPMTPGYVQSGKP 263
+A +P + GR A GA+K ++ G+ P GV +P P + S
Sbjct: 81 RACQNPSPVIDGRRANCNIASLGANKNRSLTLHHGRFRPPHGV----VPSVPYHGSSST- 135
Query: 264 HISSAPSVGYTYPQPVAPYPLASYPIPPLTAPP--SAYPAQGQVPYAPVSAKKDQLGVPP 321
+ P+ YT+ P + Y + Y L + Y Q PY P +G+
Sbjct: 136 -VFHQPTRQYTF--PYSAYGYSGYSQDTLYPANYYNVYGVQQYSPYYPAVGASGAMGLV- 191
Query: 322 TQPVGMNKYPYY 333
N YPYY
Sbjct: 192 -----QNMYPYY 198
>Medtr6g004810.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr6:438661-434987 | 20130731
Length = 383
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 79/151 (52%), Gaps = 7/151 (4%)
Query: 65 KLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALRA 124
K+F+ GLA T+ F ++GEI + ++ D+ TG+ RG+GFITY + +
Sbjct: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDKVIE- 104
Query: 125 PSKLIDGRLAACNLACEGLSGPSSALDVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEG 184
S +I+ + G + D +K+++G + VT + FF R+GE+++
Sbjct: 105 DSHIINSKQVEIKRTIP--RGAVGSKDFRTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDH 162
Query: 185 SVAYDKDTNVSRGFGFVTYKTTEAAKKAIDD 215
+ D TN SRGFGFVT+ T E A+DD
Sbjct: 163 QIMRDHSTNRSRGFGFVTFDTEE----AVDD 189
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 53/104 (50%), Gaps = 6/104 (5%)
Query: 31 AKPQLVDLLAKLGSQYPSIAEEIK------SIASADPVHRKLFVRGLAWNTSSETLCAAF 84
A P +VD + + S EIK ++ S D +K+FV G+ N + + F
Sbjct: 94 ADPSVVDKVIEDSHIINSKQVEIKRTIPRGAVGSKDFRTKKIFVGGIPSNVTEDEFRDFF 153
Query: 85 QEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALRAPSKL 128
+GE+++ ++ D +T +SRG+GF+T+ E+ L +K+
Sbjct: 154 TRYGEVKDHQIMRDHSTNRSRGFGFVTFDTEEAVDDLLSMGNKI 197
>Medtr1g073690.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:32695268-32699181 | 20130731
Length = 469
Score = 89.0 bits (219), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 87/187 (46%), Gaps = 17/187 (9%)
Query: 60 DPVHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQ 119
D KLF+ G++W+T+ E L F +G++ +V+ +K TGK RG+GF+ + +
Sbjct: 2 DSDQGKLFIGGISWDTNEEKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPSVLD 61
Query: 120 AALRAPSKLIDGRLAACNLACE----------------GLSGPSSALDVSQRKLYIGSLS 163
L +IDGR A + ++ +K+++G L
Sbjct: 62 RVLE-DKHVIDGRTVDAKRAFSREDQQISVSSRSGNSNSGMNSGNGGNMRTKKIFVGGLP 120
Query: 164 PEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPEKTLGGR 223
P + E +F +G + + V YD++T RGFGF+T+ T EA + + L G+
Sbjct: 121 PTLAEEKFRQYFEAYGHVTDVVVMYDQNTGRPRGFGFITFDTEEAVDRVLHKTFHDLNGK 180
Query: 224 TIIVKFA 230
+ VK A
Sbjct: 181 QVEVKRA 187
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 150 LDVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAA 209
+D Q KL+IG +S + E L F +G++ SV +K+T RGFGFV +
Sbjct: 1 MDSDQGKLFIGGISWDTNEEKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPSVL 60
Query: 210 KKAIDDPEKTLGGRTIIVKFA 230
+ ++D + + GRT+ K A
Sbjct: 61 DRVLED-KHVIDGRTVDAKRA 80
>Medtr1g073690.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:32695268-32699181 | 20130731
Length = 469
Score = 89.0 bits (219), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 87/187 (46%), Gaps = 17/187 (9%)
Query: 60 DPVHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQ 119
D KLF+ G++W+T+ E L F +G++ +V+ +K TGK RG+GF+ + +
Sbjct: 2 DSDQGKLFIGGISWDTNEEKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPSVLD 61
Query: 120 AALRAPSKLIDGRLAACNLACE----------------GLSGPSSALDVSQRKLYIGSLS 163
L +IDGR A + ++ +K+++G L
Sbjct: 62 RVLE-DKHVIDGRTVDAKRAFSREDQQISVSSRSGNSNSGMNSGNGGNMRTKKIFVGGLP 120
Query: 164 PEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPEKTLGGR 223
P + E +F +G + + V YD++T RGFGF+T+ T EA + + L G+
Sbjct: 121 PTLAEEKFRQYFEAYGHVTDVVVMYDQNTGRPRGFGFITFDTEEAVDRVLHKTFHDLNGK 180
Query: 224 TIIVKFA 230
+ VK A
Sbjct: 181 QVEVKRA 187
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 150 LDVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAA 209
+D Q KL+IG +S + E L F +G++ SV +K+T RGFGFV +
Sbjct: 1 MDSDQGKLFIGGISWDTNEEKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPSVL 60
Query: 210 KKAIDDPEKTLGGRTIIVKFA 230
+ ++D + + GRT+ K A
Sbjct: 61 DRVLED-KHVIDGRTVDAKRA 80
>Medtr3g055990.1 | heterogeneous nuclear ribonucleoprotein 27C,
putative | HC | chr3:22254761-22250364 | 20130731
Length = 481
Score = 88.6 bits (218), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 90/176 (51%), Gaps = 11/176 (6%)
Query: 65 KLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALRA 124
KLF+ G++W+T E L F +GE+ E ++ D+ATG++RG+GF+ + + + +
Sbjct: 7 KLFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVAERVI-I 65
Query: 125 PSKLIDGRLAACNLAC-----EGLSGPSSALDVS-----QRKLYIGSLSPEVTSEVLLSF 174
+IDGR A + ++ + ++ S +K+++G L +T +
Sbjct: 66 DKHIIDGRTVEAKKAVPRDDQQNINRQTGSVQGSPGPGRTKKIFVGGLPSTITESDFKMY 125
Query: 175 FGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPEKTLGGRTIIVKFA 230
F + G I + V YD +T RGFGF+TY + EA + + L G+ + VK A
Sbjct: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNGKMVEVKRA 181
>Medtr3g055990.2 | heterogeneous nuclear ribonucleoprotein 27C,
putative | HC | chr3:22254761-22251454 | 20130731
Length = 478
Score = 88.6 bits (218), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 90/176 (51%), Gaps = 11/176 (6%)
Query: 65 KLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALRA 124
KLF+ G++W+T E L F +GE+ E ++ D+ATG++RG+GF+ + + + +
Sbjct: 7 KLFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVAERVI-I 65
Query: 125 PSKLIDGRLAACNLAC-----EGLSGPSSALDVS-----QRKLYIGSLSPEVTSEVLLSF 174
+IDGR A + ++ + ++ S +K+++G L +T +
Sbjct: 66 DKHIIDGRTVEAKKAVPRDDQQNINRQTGSVQGSPGPGRTKKIFVGGLPSTITESDFKMY 125
Query: 175 FGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPEKTLGGRTIIVKFA 230
F + G I + V YD +T RGFGF+TY + EA + + L G+ + VK A
Sbjct: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNGKMVEVKRA 181
>Medtr3g092490.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251226-42253109 | 20130731
Length = 251
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 54/83 (65%)
Query: 59 ADPVHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMEST 118
D + K+FV GLAW T +TL F + G+I E VI D+ TGKS+GYGF+T+K+ S
Sbjct: 21 GDTTYTKIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDPNSA 80
Query: 119 QAALRAPSKLIDGRLAACNLACE 141
A + P+ +IDGR A CNLA +
Sbjct: 81 ILACQNPNPMIDGRRANCNLAYQ 103
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 68/159 (42%), Gaps = 12/159 (7%)
Query: 146 PSSALDVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKT 205
P D + K+++G L+ E + L +F + G+I E V D+ T S+G+GFVT+K
Sbjct: 17 PKHVGDTTYTKIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKD 76
Query: 206 TEAAKKAIDDPEKTLGGR--TIIVKFAGAHKGKTGQPPFPAGVPMAALPMTPGYVQSGKP 263
+A A +P + GR + + TG+ F + + +P VQ
Sbjct: 77 PNSAILACQNPNPMIDGRRANCNLAYQKPDPSLTGKQKFNS----PSRNTSPIQVQGSSA 132
Query: 264 HISSAPSVGYTYPQPVAPYPLASYPIPPLTAPPSAYPAQ 302
+ + PQ PYPL YP P P Y Q
Sbjct: 133 YYNQH------IPQYAFPYPLYRYPHPGYPRPQDIYEMQ 165
>Medtr3g092490.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251169-42253164 | 20130731
Length = 250
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 54/83 (65%)
Query: 59 ADPVHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMEST 118
D + K+FV GLAW T +TL F + G+I E VI D+ TGKS+GYGF+T+K+ S
Sbjct: 21 GDTTYTKIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDPNSA 80
Query: 119 QAALRAPSKLIDGRLAACNLACE 141
A + P+ +IDGR A CNLA +
Sbjct: 81 ILACQNPNPMIDGRRANCNLAYQ 103
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 67/156 (42%), Gaps = 12/156 (7%)
Query: 146 PSSALDVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKT 205
P D + K+++G L+ E + L +F + G+I E V D+ T S+G+GFVT+K
Sbjct: 17 PKHVGDTTYTKIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKD 76
Query: 206 TEAAKKAIDDPEKTLGGR--TIIVKFAGAHKGKTGQPPFPAGVPMAALPMTPGYVQSGKP 263
+A A +P + GR + + TG+ F + + +P VQ
Sbjct: 77 PNSAILACQNPNPMIDGRRANCNLAYQKPDPSLTGKQKFNS----PSRNTSPIQVQGSSA 132
Query: 264 HISSAPSVGYTYPQPVAPYPLASYPIPPLTAPPSAY 299
+ + PQ PYPL YP P P Y
Sbjct: 133 YYNQH------IPQYAFPYPLYRYPHPGYPRPQDIY 162
>Medtr3g082650.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:37290152-37292326 | 20130731
Length = 352
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 78/151 (51%), Gaps = 3/151 (1%)
Query: 65 KLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALRA 124
K+F+ GLA +T+ E F+ +GEI + ++ D+ TG+ RG+GFITY + ++
Sbjct: 19 KIFIGGLAKDTTLEEFVKYFERYGEITDSVIMKDRHTGRPRGFGFITYADASVVDQVIQE 78
Query: 125 PSKLIDGRLAACNLACEGLSGPSSALDVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEG 184
+ D ++ +G S D +K+++G + V+ + L FF +HG + E
Sbjct: 79 NHIINDKQVEIKRTIPKG---ASQTNDFKTKKIFVGGIPATVSEDELKIFFSKHGNVVEH 135
Query: 185 SVAYDKDTNVSRGFGFVTYKTTEAAKKAIDD 215
+ D T SRGFGFV + + +A + D
Sbjct: 136 EIIRDHTTKRSRGFGFVVFDSDKAVDNLLAD 166
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 38/76 (50%)
Query: 138 LACEGLSGPSSALDVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRG 197
+A P S S K++IG L+ + T E + +F R+GEI + + D+ T RG
Sbjct: 1 MASRKSDNPHSGDGASPGKIFIGGLAKDTTLEEFVKYFERYGEITDSVIMKDRHTGRPRG 60
Query: 198 FGFVTYKTTEAAKKAI 213
FGF+TY + I
Sbjct: 61 FGFITYADASVVDQVI 76
>Medtr3g092490.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251169-42253131 | 20130731
Length = 178
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 40/80 (50%), Positives = 53/80 (66%)
Query: 60 DPVHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQ 119
D + K+FV GLAW T +TL F + G+I E VI D+ TGKS+GYGF+T+K+ S
Sbjct: 22 DTTYTKIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDPNSAI 81
Query: 120 AALRAPSKLIDGRLAACNLA 139
A + P+ +IDGR A CNLA
Sbjct: 82 LACQNPNPMIDGRRANCNLA 101
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%)
Query: 146 PSSALDVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKT 205
P D + K+++G L+ E + L +F + G+I E V D+ T S+G+GFVT+K
Sbjct: 17 PKHVGDTTYTKIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKD 76
Query: 206 TEAAKKAIDDPEKTLGGR 223
+A A +P + GR
Sbjct: 77 PNSAILACQNPNPMIDGR 94
>Medtr3g092490.4 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251169-42253131 | 20130731
Length = 178
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 40/80 (50%), Positives = 53/80 (66%)
Query: 60 DPVHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQ 119
D + K+FV GLAW T +TL F + G+I E VI D+ TGKS+GYGF+T+K+ S
Sbjct: 22 DTTYTKIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDPNSAI 81
Query: 120 AALRAPSKLIDGRLAACNLA 139
A + P+ +IDGR A CNLA
Sbjct: 82 LACQNPNPMIDGRRANCNLA 101
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%)
Query: 146 PSSALDVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKT 205
P D + K+++G L+ E + L +F + G+I E V D+ T S+G+GFVT+K
Sbjct: 17 PKHVGDTTYTKIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKD 76
Query: 206 TEAAKKAIDDPEKTLGGR 223
+A A +P + GR
Sbjct: 77 PNSAILACQNPNPMIDGR 94
>Medtr3g027140.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:8413608-8404220 | 20130731
Length = 235
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 85/162 (52%), Gaps = 10/162 (6%)
Query: 61 PVHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQA 120
P RKL+V + S++ L QEHG +E+ V+YDK + +SR + F+T K +E A
Sbjct: 57 PALRKLYVGNIPRTVSNDELEKIVQEHGAVEKAEVMYDKYSKRSRRFAFVTMKTVEDANA 116
Query: 121 AL-RAPSKLIDGRLAACN-----LACEGL---SGPSSALDVSQRKLYIGSLSPEVTSEVL 171
A + I GR N L EGL +G S+ +D S K+Y+G+L+ VTS+ L
Sbjct: 117 AAEKLNGTEIGGREIKVNITEKPLTTEGLPVQAGESTFVD-SPYKVYVGNLAKNVTSDSL 175
Query: 172 LSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAI 213
FF G V+ T+ S GFGFVT+ + E + AI
Sbjct: 176 KKFFSEKGNALSAKVSRAPGTSKSSGFGFVTFSSDEDVEAAI 217
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 50/97 (51%), Gaps = 8/97 (8%)
Query: 155 RKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAID 214
RKLY+G++ V+++ L HG +E+ V YDK + SR F FVT KT E A A +
Sbjct: 60 RKLYVGNIPRTVSNDELEKIVQEHGAVEKAEVMYDKYSKRSRRFAFVTMKTVEDANAAAE 119
Query: 215 DPEKT-LGGRTIIVKFAGAHKGKTGQPPFPAGVPMAA 250
T +GGR I V T +P G+P+ A
Sbjct: 120 KLNGTEIGGREIKVNI-------TEKPLTTEGLPVQA 149
>Medtr4g035310.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:12141158-12149871 | 20130731
Length = 272
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 40/85 (47%), Positives = 55/85 (64%)
Query: 59 ADPVHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMEST 118
D + K+FV GLAW T ET+ F++ GEI E VI DKATG+S+GYGF+T++ ++
Sbjct: 11 GDTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPDAA 70
Query: 119 QAALRAPSKLIDGRLAACNLACEGL 143
A + +IDGR A CNLA G+
Sbjct: 71 MRACVDAAPIIDGRRANCNLASLGV 95
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%)
Query: 151 DVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAK 210
D + K+++G L+ E E + +F + GEI E V DK T S+G+GFVT++ +AA
Sbjct: 12 DTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPDAAM 71
Query: 211 KAIDDPEKTLGGR 223
+A D + GR
Sbjct: 72 RACVDAAPIIDGR 84
>Medtr5g017280.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6297976 | 20130731
Length = 397
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 93/170 (54%), Gaps = 8/170 (4%)
Query: 63 HRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAAL 122
RKL V G+ W+ +E L ++GE+E+ V+ +++TG+SRG+G++T+ +++ + L
Sbjct: 3 QRKLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVL 62
Query: 123 RAPSKLIDGRLAACNLAC--EGLSGPSSALDVSQRKLYIGSLSPEVTSEVLLSFFGRHGE 180
L D R+ +A E + P+ + ++++ + P VT E S F ++G+
Sbjct: 63 SGEHVLGD-RMLEVKVATPKEEMRAPAKKVT----RIFVARIPPSVTEETFRSHFEKYGD 117
Query: 181 IEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPEKTLGGRTIIVKFA 230
I + + D+ + + RG GF+T+ E+ + + + + LGG ++V A
Sbjct: 118 ITDLYMPKDQGSKMHRGIGFITFGNAESVENLMSETHE-LGGSAVVVDRA 166
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 105/252 (41%), Gaps = 49/252 (19%)
Query: 17 FTSVEDLRLLIEPLAKPQLVDLLAKLGSQYPSIAEEIKSIASADPVHRKLFVRGLAWNTS 76
F SV+D + ++ + L D + ++ P EE++ A A V R +FV + + +
Sbjct: 52 FASVDDAKEVLS--GEHVLGDRMLEVKVATPK--EEMR--APAKKVTR-IFVARIPPSVT 104
Query: 77 SETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAAL-------------- 122
ET + F+++G+I + + D+ + RG GFIT+ N ES + +
Sbjct: 105 EETFRSHFEKYGDITDLYMPKDQGSKMHRGIGFITFGNAESVENLMSETHELGGSAVVVD 164
Query: 123 RAPSKLID----GRLA--------------ACNLACEG----------LSGPSSALDVSQ 154
RA K D GR++ A A G + G
Sbjct: 165 RATPKEDDVKPTGRMSQGGGYGAYNAYISTATRYAALGAPTLYDHPGPIYGRGEPRRRIS 224
Query: 155 RKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAID 214
+K+++G L PE SE L +FGR G IE+ + D RGFGFVT+ A +
Sbjct: 225 KKIFVGRLPPEANSEDLRQYFGRFGRIEDVYIPRDPKRTGHRGFGFVTFADEGVADRVSL 284
Query: 215 DPEKTLGGRTII 226
P + G I
Sbjct: 285 RPHEICGHEVAI 296
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 152 VSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKK 211
+ QRKL + + +V +E L + ++GE+E+ V ++ T SRGFG+VT+ + + AK+
Sbjct: 1 MEQRKLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKE 60
Query: 212 AIDDPEKTLGGRTIIVKFA 230
+ E LG R + VK A
Sbjct: 61 VLSG-EHVLGDRMLEVKVA 78
>Medtr5g017280.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6297976 | 20130731
Length = 397
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 93/170 (54%), Gaps = 8/170 (4%)
Query: 63 HRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAAL 122
RKL V G+ W+ +E L ++GE+E+ V+ +++TG+SRG+G++T+ +++ + L
Sbjct: 3 QRKLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVL 62
Query: 123 RAPSKLIDGRLAACNLAC--EGLSGPSSALDVSQRKLYIGSLSPEVTSEVLLSFFGRHGE 180
L D R+ +A E + P+ + ++++ + P VT E S F ++G+
Sbjct: 63 SGEHVLGD-RMLEVKVATPKEEMRAPAKKVT----RIFVARIPPSVTEETFRSHFEKYGD 117
Query: 181 IEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPEKTLGGRTIIVKFA 230
I + + D+ + + RG GF+T+ E+ + + + + LGG ++V A
Sbjct: 118 ITDLYMPKDQGSKMHRGIGFITFGNAESVENLMSETHE-LGGSAVVVDRA 166
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 105/252 (41%), Gaps = 49/252 (19%)
Query: 17 FTSVEDLRLLIEPLAKPQLVDLLAKLGSQYPSIAEEIKSIASADPVHRKLFVRGLAWNTS 76
F SV+D + ++ + L D + ++ P EE++ A A V R +FV + + +
Sbjct: 52 FASVDDAKEVLS--GEHVLGDRMLEVKVATPK--EEMR--APAKKVTR-IFVARIPPSVT 104
Query: 77 SETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAAL-------------- 122
ET + F+++G+I + + D+ + RG GFIT+ N ES + +
Sbjct: 105 EETFRSHFEKYGDITDLYMPKDQGSKMHRGIGFITFGNAESVENLMSETHELGGSAVVVD 164
Query: 123 RAPSKLID----GRLA--------------ACNLACEG----------LSGPSSALDVSQ 154
RA K D GR++ A A G + G
Sbjct: 165 RATPKEDDVKPTGRMSQGGGYGAYNAYISTATRYAALGAPTLYDHPGPIYGRGEPRRRIS 224
Query: 155 RKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAID 214
+K+++G L PE SE L +FGR G IE+ + D RGFGFVT+ A +
Sbjct: 225 KKIFVGRLPPEANSEDLRQYFGRFGRIEDVYIPRDPKRTGHRGFGFVTFADEGVADRVSL 284
Query: 215 DPEKTLGGRTII 226
P + G I
Sbjct: 285 RPHEICGHEVAI 296
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 152 VSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKK 211
+ QRKL + + +V +E L + ++GE+E+ V ++ T SRGFG+VT+ + + AK+
Sbjct: 1 MEQRKLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKE 60
Query: 212 AIDDPEKTLGGRTIIVKFA 230
+ E LG R + VK A
Sbjct: 61 VLSG-EHVLGDRMLEVKVA 78
>Medtr5g017280.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6298060 | 20130731
Length = 397
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 93/170 (54%), Gaps = 8/170 (4%)
Query: 63 HRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAAL 122
RKL V G+ W+ +E L ++GE+E+ V+ +++TG+SRG+G++T+ +++ + L
Sbjct: 3 QRKLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVL 62
Query: 123 RAPSKLIDGRLAACNLAC--EGLSGPSSALDVSQRKLYIGSLSPEVTSEVLLSFFGRHGE 180
L D R+ +A E + P+ + ++++ + P VT E S F ++G+
Sbjct: 63 SGEHVLGD-RMLEVKVATPKEEMRAPAKKVT----RIFVARIPPSVTEETFRSHFEKYGD 117
Query: 181 IEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPEKTLGGRTIIVKFA 230
I + + D+ + + RG GF+T+ E+ + + + + LGG ++V A
Sbjct: 118 ITDLYMPKDQGSKMHRGIGFITFGNAESVENLMSETHE-LGGSAVVVDRA 166
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 105/252 (41%), Gaps = 49/252 (19%)
Query: 17 FTSVEDLRLLIEPLAKPQLVDLLAKLGSQYPSIAEEIKSIASADPVHRKLFVRGLAWNTS 76
F SV+D + ++ + L D + ++ P EE++ A A V R +FV + + +
Sbjct: 52 FASVDDAKEVLS--GEHVLGDRMLEVKVATPK--EEMR--APAKKVTR-IFVARIPPSVT 104
Query: 77 SETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAAL-------------- 122
ET + F+++G+I + + D+ + RG GFIT+ N ES + +
Sbjct: 105 EETFRSHFEKYGDITDLYMPKDQGSKMHRGIGFITFGNAESVENLMSETHELGGSAVVVD 164
Query: 123 RAPSKLID----GRLA--------------ACNLACEG----------LSGPSSALDVSQ 154
RA K D GR++ A A G + G
Sbjct: 165 RATPKEDDVKPTGRMSQGGGYGAYNAYISTATRYAALGAPTLYDHPGPIYGRGEPRRRIS 224
Query: 155 RKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAID 214
+K+++G L PE SE L +FGR G IE+ + D RGFGFVT+ A +
Sbjct: 225 KKIFVGRLPPEANSEDLRQYFGRFGRIEDVYIPRDPKRTGHRGFGFVTFADEGVADRVSL 284
Query: 215 DPEKTLGGRTII 226
P + G I
Sbjct: 285 RPHEICGHEVAI 296
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 152 VSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKK 211
+ QRKL + + +V +E L + ++GE+E+ V ++ T SRGFG+VT+ + + AK+
Sbjct: 1 MEQRKLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKE 60
Query: 212 AIDDPEKTLGGRTIIVKFA 230
+ E LG R + VK A
Sbjct: 61 VLSG-EHVLGDRMLEVKVA 78
>Medtr4g035310.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:12141158-12149871 | 20130731
Length = 267
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 40/85 (47%), Positives = 55/85 (64%)
Query: 59 ADPVHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMEST 118
D + K+FV GLAW T ET+ F++ GEI E VI DKATG+S+GYGF+T++ ++
Sbjct: 11 GDTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPDAA 70
Query: 119 QAALRAPSKLIDGRLAACNLACEGL 143
A + +IDGR A CNLA G+
Sbjct: 71 MRACVDAAPIIDGRRANCNLASLGV 95
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%)
Query: 151 DVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAK 210
D + K+++G L+ E E + +F + GEI E V DK T S+G+GFVT++ +AA
Sbjct: 12 DTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPDAAM 71
Query: 211 KAIDDPEKTLGGR 223
+A D + GR
Sbjct: 72 RACVDAAPIIDGR 84
>Medtr5g017280.4 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6298060 | 20130731
Length = 373
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 93/170 (54%), Gaps = 8/170 (4%)
Query: 63 HRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAAL 122
RKL V G+ W+ +E L ++GE+E+ V+ +++TG+SRG+G++T+ +++ + L
Sbjct: 3 QRKLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVL 62
Query: 123 RAPSKLIDGRLAACNLAC--EGLSGPSSALDVSQRKLYIGSLSPEVTSEVLLSFFGRHGE 180
L D R+ +A E + P+ + ++++ + P VT E S F ++G+
Sbjct: 63 SGEHVLGD-RMLEVKVATPKEEMRAPAKKVT----RIFVARIPPSVTEETFRSHFEKYGD 117
Query: 181 IEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPEKTLGGRTIIVKFA 230
I + + D+ + + RG GF+T+ E+ + + + + LGG ++V A
Sbjct: 118 ITDLYMPKDQGSKMHRGIGFITFGNAESVENLMSETHE-LGGSAVVVDRA 166
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 105/252 (41%), Gaps = 49/252 (19%)
Query: 17 FTSVEDLRLLIEPLAKPQLVDLLAKLGSQYPSIAEEIKSIASADPVHRKLFVRGLAWNTS 76
F SV+D + ++ + L D + ++ P EE++ A A V R +FV + + +
Sbjct: 52 FASVDDAKEVLS--GEHVLGDRMLEVKVATPK--EEMR--APAKKVTR-IFVARIPPSVT 104
Query: 77 SETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAAL-------------- 122
ET + F+++G+I + + D+ + RG GFIT+ N ES + +
Sbjct: 105 EETFRSHFEKYGDITDLYMPKDQGSKMHRGIGFITFGNAESVENLMSETHELGGSAVVVD 164
Query: 123 RAPSKLID----GRLA--------------ACNLACEG----------LSGPSSALDVSQ 154
RA K D GR++ A A G + G
Sbjct: 165 RATPKEDDVKPTGRMSQGGGYGAYNAYISTATRYAALGAPTLYDHPGPIYGRGEPRRRIS 224
Query: 155 RKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAID 214
+K+++G L PE SE L +FGR G IE+ + D RGFGFVT+ A +
Sbjct: 225 KKIFVGRLPPEANSEDLRQYFGRFGRIEDVYIPRDPKRTGHRGFGFVTFADEGVADRVSL 284
Query: 215 DPEKTLGGRTII 226
P + G I
Sbjct: 285 RPHEICGHEVAI 296
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 152 VSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKK 211
+ QRKL + + +V +E L + ++GE+E+ V ++ T SRGFG+VT+ + + AK+
Sbjct: 1 MEQRKLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKE 60
Query: 212 AIDDPEKTLGGRTIIVKFA 230
+ E LG R + VK A
Sbjct: 61 VLSG-EHVLGDRMLEVKVA 78
>Medtr7g117495.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:48649576-48651271 | 20130731
Length = 253
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 56/84 (66%)
Query: 59 ADPVHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMEST 118
D K+FV GLAW T +TL F+++G+I E +I DK TG+S+GYGF+T+K+ +S
Sbjct: 13 GDTTLTKVFVGGLAWETPKDTLREHFEKYGDILEAVIISDKVTGRSKGYGFVTFKDADSA 72
Query: 119 QAALRAPSKLIDGRLAACNLACEG 142
+ A P+ +I+GR A CN+A G
Sbjct: 73 KKACEEPTVIINGRRANCNIASLG 96
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 47/78 (60%)
Query: 146 PSSALDVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKT 205
PS D + K+++G L+ E + L F ++G+I E + DK T S+G+GFVT+K
Sbjct: 9 PSQFGDTTLTKVFVGGLAWETPKDTLREHFEKYGDILEAVIISDKVTGRSKGYGFVTFKD 68
Query: 206 TEAAKKAIDDPEKTLGGR 223
++AKKA ++P + GR
Sbjct: 69 ADSAKKACEEPTVIINGR 86
>Medtr7g117495.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:48649613-48651189 | 20130731
Length = 256
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 55/78 (70%)
Query: 65 KLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALRA 124
K+FV GLAW T +TL F+++G+I E +I DK TG+S+GYGF+T+K+ +S + A
Sbjct: 19 KVFVGGLAWETPKDTLREHFEKYGDILEAVIISDKVTGRSKGYGFVTFKDADSAKKACEE 78
Query: 125 PSKLIDGRLAACNLACEG 142
P+ +I+GR A CN+A G
Sbjct: 79 PTVIINGRRANCNIASLG 96
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 47/78 (60%)
Query: 146 PSSALDVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKT 205
PS D + K+++G L+ E + L F ++G+I E + DK T S+G+GFVT+K
Sbjct: 9 PSQFGDTTLTKVFVGGLAWETPKDTLREHFEKYGDILEAVIISDKVTGRSKGYGFVTFKD 68
Query: 206 TEAAKKAIDDPEKTLGGR 223
++AKKA ++P + GR
Sbjct: 69 ADSAKKACEEPTVIINGR 86
>Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC |
chr3:34381451-34378914 | 20130731
Length = 291
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 89/181 (49%), Gaps = 15/181 (8%)
Query: 61 PVHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQA 120
P KLFV ++ SE L F + G +E VIY++ T SRG+GF+T +E ++
Sbjct: 106 PEDAKLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAES 165
Query: 121 ALRAPSKL-IDGRLAACNLACEGLSGPSSALDVSQR---------KLYIGSLSPEVTSEV 170
A+ + +GR N A S P + ++R ++Y+ +L+ EV +
Sbjct: 166 AVEKFNGYDYNGRSLVVNKASPKGSRP----ERTERAPRTFEPVLRIYVANLAWEVDNSR 221
Query: 171 LLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPE-KTLGGRTIIVKF 229
L F HG+I V YD++T SRGFGFVT AI + ++L GRTI V
Sbjct: 222 LEQVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAALDGQSLEGRTIRVSV 281
Query: 230 A 230
A
Sbjct: 282 A 282
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 6/83 (7%)
Query: 60 DPVHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKN---ME 116
+PV R ++V LAW + L F EHG+I V+YD+ TG+SRG+GF+T + M
Sbjct: 203 EPVLR-IYVANLAWEVDNSRLEQVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMN 261
Query: 117 STQAALRAPSKLIDGRLAACNLA 139
AAL S ++GR ++A
Sbjct: 262 DAIAALDGQS--LEGRTIRVSVA 282
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 54/93 (58%), Gaps = 10/93 (10%)
Query: 156 KLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDD 215
KL++G+ +V SE L FG+ G +E V Y++ T++SRGFGFVT T E A+ A+
Sbjct: 110 KLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAESAV-- 167
Query: 216 PEKTLG----GRTIIVKFA---GAHKGKTGQPP 241
EK G GR+++V A G+ +T + P
Sbjct: 168 -EKFNGYDYNGRSLVVNKASPKGSRPERTERAP 199
>Medtr3g065190.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:29411645-29406062 | 20130731
Length = 379
Score = 85.9 bits (211), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 103/233 (44%), Gaps = 12/233 (5%)
Query: 67 FVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALRAPS 126
+V L S E L F + G + V D+ T + +GYGF+ +++ E A++ +
Sbjct: 28 YVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLN 87
Query: 127 KLIDGRLAACNLACEGLSGPSSALDVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEG-S 185
+ +L + S +LDV L+IG+L P+V ++L F G I
Sbjct: 88 MI---KLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPK 143
Query: 186 VAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPE-KTLGGRTIIVKFA------GAHKGKTG 238
+ D DT SRGFGF++Y + EA+ AI+ + L R I V +A G G
Sbjct: 144 IMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPA 203
Query: 239 QPPFPAGVPMAALPMTPGYVQSGKPHISSAPSVGYTYPQPVAPYPLASYPIPP 291
+ A P A SG P + +AP T P PV P P A+ PP
Sbjct: 204 ERVLAASNPTAQKSRPHTLFASGPPSLPNAPQANGTIPAPVPPRPFANGVAPP 256
>Medtr5g064120.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:26612934-26618708 | 20130731
Length = 283
Score = 85.1 bits (209), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 54/80 (67%)
Query: 60 DPVHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQ 119
D K+FV GLAW T ++ + F++ G+I E +I DK TGKS+GYGF+T+++ ES +
Sbjct: 12 DTTFTKVFVGGLAWETPTDEMRTYFEQFGDILEAVIITDKNTGKSKGYGFVTFRDPESAR 71
Query: 120 AALRAPSKLIDGRLAACNLA 139
A P+ +IDGR A CN+A
Sbjct: 72 RACADPNPVIDGRRANCNIA 91
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 48/80 (60%)
Query: 151 DVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAK 210
D + K+++G L+ E ++ + ++F + G+I E + DK+T S+G+GFVT++ E+A+
Sbjct: 12 DTTFTKVFVGGLAWETPTDEMRTYFEQFGDILEAVIITDKNTGKSKGYGFVTFRDPESAR 71
Query: 211 KAIDDPEKTLGGRTIIVKFA 230
+A DP + GR A
Sbjct: 72 RACADPNPVIDGRRANCNIA 91
>Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:28254735-28256581 | 20130731
Length = 280
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 95/190 (50%), Gaps = 28/190 (14%)
Query: 63 HRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAAL 122
+++LFV L ++ S L F+ G++E VIYDK+TG+SRG+GF+T + +AA
Sbjct: 83 NQRLFVGNLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEAAA 142
Query: 123 RAPSK-LIDGRLAACN-------------------LACEGLSGP----SSALDVSQRKLY 158
+ + ++DGR N + GP SS D +++
Sbjct: 143 QQLNGYVVDGRELRVNAGPPPPPRSENSRFGENPRFGGDRPRGPPRGGSSDGD---NRVH 199
Query: 159 IGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPE- 217
+G+L+ V + L S FG G++ E V YD+++ SRGFGFVT+ + + AI +
Sbjct: 200 VGNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAIRTLDG 259
Query: 218 KTLGGRTIIV 227
L GR I V
Sbjct: 260 ADLNGRAIRV 269
>Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:28254735-28256581 | 20130731
Length = 280
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 95/190 (50%), Gaps = 28/190 (14%)
Query: 63 HRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAAL 122
+++LFV L ++ S L F+ G++E VIYDK+TG+SRG+GF+T + +AA
Sbjct: 83 NQRLFVGNLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEAAA 142
Query: 123 RAPSK-LIDGRLAACN-------------------LACEGLSGP----SSALDVSQRKLY 158
+ + ++DGR N + GP SS D +++
Sbjct: 143 QQLNGYVVDGRELRVNAGPPPPPRSENSRFGENPRFGGDRPRGPPRGGSSDGD---NRVH 199
Query: 159 IGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPE- 217
+G+L+ V + L S FG G++ E V YD+++ SRGFGFVT+ + + AI +
Sbjct: 200 VGNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAIRTLDG 259
Query: 218 KTLGGRTIIV 227
L GR I V
Sbjct: 260 ADLNGRAIRV 269
>Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:17072567-17075712 | 20130731
Length = 285
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 92/193 (47%), Gaps = 32/193 (16%)
Query: 54 KSIASADPVHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYK 113
+++A D KL+ L ++ S L +E+G E V+YD+ TGKSRG+ F+T
Sbjct: 104 ETVAEVDT-RTKLYFGNLPYSVDSALLAGLIEEYGSAELIEVLYDRDTGKSRGFAFVTMS 162
Query: 114 NMESTQAALRAPSKLIDGRLAACNLACEGLSGPSSALDVSQR-------------KLYIG 160
+E A ++ NL + G + ++ S + KL++G
Sbjct: 163 CVEDCNAVIQ-------------NLDGKEFMGRTLRVNFSDKPKPKEPLYPETEYKLFVG 209
Query: 161 SLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKT---TEAAKKAIDDPE 217
+L+ VTSE L F HG + V +D +T SRG+GFV+Y T + A +D+ E
Sbjct: 210 NLAWTVTSESLTQAFQEHGTVVGARVLFDGETGKSRGYGFVSYATKSEMDTALAIMDNVE 269
Query: 218 KTLGGRTIIVKFA 230
L GRT+ V A
Sbjct: 270 --LEGRTLRVSLA 280
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 49/101 (48%), Gaps = 4/101 (3%)
Query: 145 GPSSALDVSQR-KLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTY 203
G + +V R KLY G+L V S +L +G E V YD+DT SRGF FVT
Sbjct: 102 GGETVAEVDTRTKLYFGNLPYSVDSALLAGLIEEYGSAELIEVLYDRDTGKSRGFAFVTM 161
Query: 204 KTTEAAKKAIDDPE-KTLGGRTIIVKFAGAHKGKTGQPPFP 243
E I + + K GRT+ V F + K K +P +P
Sbjct: 162 SCVEDCNAVIQNLDGKEFMGRTLRVNF--SDKPKPKEPLYP 200
>Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC |
chr3:34381440-34379306 | 20130731
Length = 271
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 79/163 (48%), Gaps = 14/163 (8%)
Query: 61 PVHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQA 120
P KLFV ++ SE L F + G +E VIY++ T SRG+GF+T +E ++
Sbjct: 106 PEDAKLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAES 165
Query: 121 ALRAPSKL-IDGRLAACNLACEGLSGPSSALDVSQR---------KLYIGSLSPEVTSEV 170
A+ + +GR N A S P + ++R ++Y+ +L+ EV +
Sbjct: 166 AVEKFNGYDYNGRSLVVNKASPKGSRP----ERTERAPRTFEPVLRIYVANLAWEVDNSR 221
Query: 171 LLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAI 213
L F HG+I V YD++T SRGFGFVT AI
Sbjct: 222 LEQVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAI 264
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 54/93 (58%), Gaps = 10/93 (10%)
Query: 156 KLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDD 215
KL++G+ +V SE L FG+ G +E V Y++ T++SRGFGFVT T E A+ A+
Sbjct: 110 KLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAESAV-- 167
Query: 216 PEKTLG----GRTIIVKFA---GAHKGKTGQPP 241
EK G GR+++V A G+ +T + P
Sbjct: 168 -EKFNGYDYNGRSLVVNKASPKGSRPERTERAP 199
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 5/74 (6%)
Query: 60 DPVHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQ 119
+PV R ++V LAW + L F EHG+I V+YD+ TG+SRG+GF+T +
Sbjct: 203 EPVLR-IYVANLAWEVDNSRLEQVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMN 261
Query: 120 AALRAPSKLIDGRL 133
A+ A +DG++
Sbjct: 262 DAIAA----LDGQV 271
>Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700218-24705084 | 20130731
Length = 311
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 79/158 (50%), Gaps = 8/158 (5%)
Query: 64 RKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALR 123
R+LFV L ++ SS L F E G + ++YD T +SRG+ F+T N+E + A+R
Sbjct: 108 RRLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEEAIR 167
Query: 124 A-PSKLIDGRLAACNLACEGLSGPSSALDVSQR-------KLYIGSLSPEVTSEVLLSFF 175
+ GR N + G + + R K+Y G+L ++TS+ L F
Sbjct: 168 MFDGTTVGGRAIKVNFPEVPIVGKRVQMGSTYRGYVDSPHKIYAGNLGWDMTSQYLRKAF 227
Query: 176 GRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAI 213
+ + V Y+++ SRG+GFV+++T E + A+
Sbjct: 228 AKQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVAL 265
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 155 RKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAID 214
R+L++G+L ++S L FG G + + YD TN SRGF FVT E A++AI
Sbjct: 108 RRLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEEAIR 167
Query: 215 DPE-KTLGGRTIIVKF 229
+ T+GGR I V F
Sbjct: 168 MFDGTTVGGRAIKVNF 183
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 65 KLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALRA 124
K++ L W+ +S+ L AF + + V+Y++ GKSRGYGF++++ E + AL A
Sbjct: 208 KIYAGNLGWDMTSQYLRKAFAKQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVALSA 267
Query: 125 PSKL-IDGRLAACNLACEG 142
+ + + GR LA +
Sbjct: 268 MNGVEVQGRPLRLKLAVDN 286
>Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700221-24703822 | 20130731
Length = 311
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 79/158 (50%), Gaps = 8/158 (5%)
Query: 64 RKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALR 123
R+LFV L ++ SS L F E G + ++YD T +SRG+ F+T N+E + A+R
Sbjct: 108 RRLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEEAIR 167
Query: 124 A-PSKLIDGRLAACNLACEGLSGPSSALDVSQR-------KLYIGSLSPEVTSEVLLSFF 175
+ GR N + G + + R K+Y G+L ++TS+ L F
Sbjct: 168 MFDGTTVGGRAIKVNFPEVPIVGKRVQMGSTYRGYVDSPHKIYAGNLGWDMTSQYLRKAF 227
Query: 176 GRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAI 213
+ + V Y+++ SRG+GFV+++T E + A+
Sbjct: 228 AKQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVAL 265
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 155 RKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAID 214
R+L++G+L ++S L FG G + + YD TN SRGF FVT E A++AI
Sbjct: 108 RRLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEEAIR 167
Query: 215 DPE-KTLGGRTIIVKF 229
+ T+GGR I V F
Sbjct: 168 MFDGTTVGGRAIKVNF 183
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 65 KLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALRA 124
K++ L W+ +S+ L AF + + V+Y++ GKSRGYGF++++ E + AL A
Sbjct: 208 KIYAGNLGWDMTSQYLRKAFAKQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVALSA 267
Query: 125 PSKL-IDGRLAACNLACEG 142
+ + + GR LA +
Sbjct: 268 MNGVEVQGRPLRLKLAVDN 286
>Medtr3g103420.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:47715877-47717644 | 20130731
Length = 371
Score = 78.6 bits (192), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 90/195 (46%), Gaps = 18/195 (9%)
Query: 65 KLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALRA 124
KLFV G++ T+ +TL F ++G++ + +D+ T RG+GF+T+ ++ S AL+
Sbjct: 11 KLFVGGISRETTEDTLKHHFTKYGDVLHSTISFDRTTRIPRGFGFVTFSDISSAHNALQD 70
Query: 125 PSKLIDGRLAACNLAC----------------EGLSGPSSALD-VSQRKLYIGSLSPEVT 167
++ GR A SG + + +K+++G L ++
Sbjct: 71 THAIL-GRKVEVRKAIPRSEQLQQNQLQNRGGNSYSGYECGNEHIRTKKIFVGGLPANMS 129
Query: 168 SEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPEKTLGGRTIIV 227
E +F R G I + V D T+ RGFGF+T+ + ++ + + L GR + V
Sbjct: 130 VEEFKRYFERFGRITDVVVMQDSLTHRPRGFGFITFDSEDSVQSVMMRSFHDLNGRQVEV 189
Query: 228 KFAGAHKGKTGQPPF 242
K A +G G F
Sbjct: 190 KRAVPREGNAGSEGF 204
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 46/79 (58%)
Query: 150 LDVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAA 209
+D + KL++G +S E T + L F ++G++ ++++D+ T + RGFGFVT+ +A
Sbjct: 5 MDSDKAKLFVGGISRETTEDTLKHHFTKYGDVLHSTISFDRTTRIPRGFGFVTFSDISSA 64
Query: 210 KKAIDDPEKTLGGRTIIVK 228
A+ D LG + + K
Sbjct: 65 HNALQDTHAILGRKVEVRK 83
>Medtr4g122650.1 | flowering time control FCA-like protein | HC |
chr4:50587410-50576809 | 20130731
Length = 737
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 87/184 (47%), Gaps = 5/184 (2%)
Query: 65 KLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALRA 124
KLFV + + E + F+EHG + E A+I D+ TG+ +G FI Y E A+RA
Sbjct: 89 KLFVGSVPRTATEEDIRPLFEEHGNVVEVALIKDRKTGQHQGCCFIKYATSEEADQAIRA 148
Query: 125 PSKLIDGRLAACNLACEGLSGPSSALDVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEG 184
+ G L + KL++GSL+ + + + + F ++G IE+
Sbjct: 149 LHNRHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQASVKEVEEVFSKYGRIEDV 208
Query: 185 SVAYDKDTNVSRGFGFVTYKTTEAAKKAID--DPEKTLGG--RTIIVKFAGAHKGKTGQP 240
+ D D SRG GFV Y + A AI+ + T+ G + +IV+FA + + G
Sbjct: 209 YLMRD-DQKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCEQPLIVRFADPKRPRQGDS 267
Query: 241 PFPA 244
PA
Sbjct: 268 RGPA 271
>Medtr4g124940.1 | nucleolysin TIAR-like protein | HC |
chr4:51822192-51817182 | 20130731
Length = 404
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 68/224 (30%), Positives = 95/224 (42%), Gaps = 49/224 (21%)
Query: 63 HRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAAL 122
H +FV L+ + TL A F + + V++D+ TG+SRG+GF++++N + Q+A+
Sbjct: 130 HFHIFVGDLSPEVTDATLYACFSAYSSCSDARVMWDQKTGRSRGFGFVSFRNQQEAQSAI 189
Query: 123 RAPS-KLIDGRLAACNLACEG------------------LSGPSS-----ALDVSQRK-- 156
+ K + R CN A +G SG S D S K
Sbjct: 190 NDLTGKWLGSRQIRCNWATKGANMNGENQSSESKSVVELTSGTSEEAQEMTSDDSPEKNP 249
Query: 157 ----LYIGSLSPEVTSEVLLSFFGRH----GEIEEGSVAYDKDTNVSRGFGFVTYKTTEA 208
+Y+G+L+PEVTS L F H G IE+ V DK GFGFV Y T
Sbjct: 250 QYTTVYVGNLAPEVTSVDLHHHF--HALGVGTIEDVRVQRDK------GFGFVRYSTHGE 301
Query: 209 AKKAIDDPEKTLGGRTIIVKFAGAHKGKTGQPPFPAGVPMAALP 252
A AI +G + F K G P P G LP
Sbjct: 302 AALAIQ-----MGNTRFL--FGKPIKCSWGSKPTPPGTASTPLP 338
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 78/170 (45%), Gaps = 11/170 (6%)
Query: 64 RKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALR 123
R ++V + S L F G +E +I + + YGF+ Y + S A+
Sbjct: 46 RSVYVGNIHPQVSEPLLQELFSSAGALEGCKLIRKEKSS----YGFVDYFDRSSAAIAIV 101
Query: 124 APS-KLIDGRLAACNLA-CEGLSGPSSALDVSQRKLYIGSLSPEVTSEVLLSFFGRHGEI 181
+ + I G+ N A G +S +++G LSPEVT L + F +
Sbjct: 102 TLNGRNIFGQSIKVNWAYTRGQREDTSG----HFHIFVGDLSPEVTDATLYACFSAYSSC 157
Query: 182 EEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDD-PEKTLGGRTIIVKFA 230
+ V +D+ T SRGFGFV+++ + A+ AI+D K LG R I +A
Sbjct: 158 SDARVMWDQKTGRSRGFGFVSFRNQQEAQSAINDLTGKWLGSRQIRCNWA 207
>Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC |
chr7:43324307-43322087 | 20130731
Length = 318
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 93/205 (45%), Gaps = 19/205 (9%)
Query: 44 SQYPSIAEEIKSIASADPVHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGK 103
S P EE K S D +L+V L ++ +S L F E G + ++YD+ T +
Sbjct: 91 SDKPKQDEEQKVTTSDDA--GRLYVGNLPFSMTSSQLADIFAEAGTVVSVEIVYDRLTDR 148
Query: 104 SRGYGFITYKNMESTQAALRA-PSKLIDGRLAACN-----------LACEGLSGPSSALD 151
SRG+ F+T K+ E + A+R + GR A N + + +
Sbjct: 149 SRGFAFVTMKSAEEAKEAIRMFDGSQVGGRSAKVNFPEVPKGGERLVMGQKVRNSYRGFV 208
Query: 152 VSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTT---EA 208
S K+Y G+L + S+ L F + + Y++D SRGFGFVT++T EA
Sbjct: 209 DSPHKIYAGNLGWGMNSQDLRDAFDEQPGLLGAKIIYERDNGRSRGFGFVTFETAEHLEA 268
Query: 209 AKKAIDDPEKTLGGRTIIVKFAGAH 233
A A++ E + GR + + A A
Sbjct: 269 ALNAMNGVE--VQGRPLRLNLAAAR 291
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 156 KLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDD 215
+LY+G+L +TS L F G + + YD+ T+ SRGF FVT K+ E AK+AI
Sbjct: 110 RLYVGNLPFSMTSSQLADIFAEAGTVVSVEIVYDRLTDRSRGFAFVTMKSAEEAKEAIRM 169
Query: 216 PEKT-LGGRTIIVKFAGAHKG 235
+ + +GGR+ V F KG
Sbjct: 170 FDGSQVGGRSAKVNFPEVPKG 190
>Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986546-3983001 | 20130731
Length = 253
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 60/96 (62%), Gaps = 6/96 (6%)
Query: 47 PSIAEEIKSIASADPVHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRG 106
PS+ + I+S++SA KLF+ G++++T L AF +G++ + +I D+ TG+SRG
Sbjct: 28 PSLFQAIRSMSSA-----KLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRG 82
Query: 107 YGFITYKNMESTQAALRA-PSKLIDGRLAACNLACE 141
+GFIT+ E +AL+A +K +DGR N A E
Sbjct: 83 FGFITFATSEEASSALQAMDNKELDGRTVRVNYATE 118
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 152 VSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKK 211
+S KL+IG +S L F R+G++ + + D+DT SRGFGF+T+ T+E A
Sbjct: 37 MSSAKLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASS 96
Query: 212 AIDDPE-KTLGGRTIIVKFA 230
A+ + K L GRT+ V +A
Sbjct: 97 ALQAMDNKELDGRTVRVNYA 116
>Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986488-3983001 | 20130731
Length = 253
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 60/96 (62%), Gaps = 6/96 (6%)
Query: 47 PSIAEEIKSIASADPVHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRG 106
PS+ + I+S++SA KLF+ G++++T L AF +G++ + +I D+ TG+SRG
Sbjct: 28 PSLFQAIRSMSSA-----KLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRG 82
Query: 107 YGFITYKNMESTQAALRA-PSKLIDGRLAACNLACE 141
+GFIT+ E +AL+A +K +DGR N A E
Sbjct: 83 FGFITFATSEEASSALQAMDNKELDGRTVRVNYATE 118
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 152 VSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKK 211
+S KL+IG +S L F R+G++ + + D+DT SRGFGF+T+ T+E A
Sbjct: 37 MSSAKLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASS 96
Query: 212 AIDDPE-KTLGGRTIIVKFA 230
A+ + K L GRT+ V +A
Sbjct: 97 ALQAMDNKELDGRTVRVNYA 116
>Medtr4g070080.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26374538-26375597 | 20130731
Length = 128
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 61 PVHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQA 120
V + FV GLAW T +E L AF ++GEI + +I D+ TG+SRG+GF+T+ N +S
Sbjct: 3 DVEYRCFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMND 62
Query: 121 ALRAPS-KLIDGRLAACNLA 139
A+ A + + +DGR N A
Sbjct: 63 AIEAMNGQDLDGRNITVNQA 82
>Medtr4g070080.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26374412-26375716 | 20130731
Length = 161
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 61 PVHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQA 120
V + FV GLAW T +E L AF ++GEI + +I D+ TG+SRG+GF+T+ N +S
Sbjct: 3 DVEYRCFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMND 62
Query: 121 ALRAPS-KLIDGRLAACNLA 139
A+ A + + +DGR N A
Sbjct: 63 AIEAMNGQDLDGRNITVNQA 82
>Medtr3g109090.3 | nucleolysin TIAR-like protein | HC |
chr3:50426665-50437301 | 20130731
Length = 424
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 71/275 (25%), Positives = 108/275 (39%), Gaps = 52/275 (18%)
Query: 10 EEATNGGFTSVED---LRLLIEPLAKPQLVDLLAKLGSQYPSIAEEIKSIASADPVHRKL 66
+E ++ GF D L I L QL K+ Y + + E S H +
Sbjct: 78 KEKSSYGFVDYHDRASAALAIMTLHGRQLYGQALKVNWAYANSSREDTS------GHFNV 131
Query: 67 FVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALR-AP 125
FV L+ + TL A F + + V++D TG+S+GYGF+++++ + Q+A+
Sbjct: 132 FVGDLSPEVTDATLFACFSVYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDMT 191
Query: 126 SKLIDGRLAACNLACEGLSGPSSALDVSQRK----------------------------- 156
K + R CN A +G G S+ ++ +
Sbjct: 192 GKWLGNRQIRCNWATKGAGGSSNEEKINDSQNAVVLTNGSSDGGQDNSNEDAPENNPSYT 251
Query: 157 -LYIGSLSPEVTSEVLLSFFGRHGE--IEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAI 213
+Y+G+L +VT L F G +EE V K GFGFV Y T E A AI
Sbjct: 252 TVYVGNLPHDVTQAELHCQFHALGAGVLEEVRVQSGK------GFGFVRYNTHEEAAMAI 305
Query: 214 DDPEKTLGGRTIIVKFAGAHKGKTGQPPFPAGVPM 248
+ GR + K G PP A P+
Sbjct: 306 ----QMANGRPVRGKTMKCSWGSKPTPPGTASNPL 336
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 78/170 (45%), Gaps = 11/170 (6%)
Query: 64 RKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALR 123
R ++V + N + + L FQ G + +I + + YGF+ Y + S A+
Sbjct: 44 RSVYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKEKSS----YGFVDYHDRASAALAIM 99
Query: 124 APSKLIDGR-LAACNLACEGLSGPSSALDVSQR-KLYIGSLSPEVTSEVLLSFFGRHGEI 181
+ GR L L SS D S +++G LSPEVT L + F +
Sbjct: 100 T----LHGRQLYGQALKVNWAYANSSREDTSGHFNVFVGDLSPEVTDATLFACFSVYTTC 155
Query: 182 EEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPE-KTLGGRTIIVKFA 230
+ V +D T S+G+GFV+++ + A+ AI+D K LG R I +A
Sbjct: 156 SDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWA 205
>Medtr4g070190.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26418780-26419998 | 20130731
Length = 164
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 55/85 (64%), Gaps = 2/85 (2%)
Query: 56 IASADPVHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNM 115
+ASAD V + FV GLAW T SE L AF ++GEI + +I D+ TG+SRG+GF+T+ +
Sbjct: 1 MASAD-VEYRCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADE 59
Query: 116 ESTQAALRAPS-KLIDGRLAACNLA 139
+S + A+ + + +DGR N A
Sbjct: 60 KSMRDAIEGMNGQDMDGRNITVNEA 84
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 156 KLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDD 215
+ ++G L+ SE L F ++GEI + + D++T SRGFGFVT+ ++ + AI+
Sbjct: 9 RCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMRDAIEG 68
Query: 216 PE-KTLGGRTIIVK 228
+ + GR I V
Sbjct: 69 MNGQDMDGRNITVN 82
>Medtr3g109090.1 | nucleolysin TIAR-like protein | HC |
chr3:50427006-50436985 | 20130731
Length = 440
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 71/275 (25%), Positives = 108/275 (39%), Gaps = 52/275 (18%)
Query: 10 EEATNGGFTSVED---LRLLIEPLAKPQLVDLLAKLGSQYPSIAEEIKSIASADPVHRKL 66
+E ++ GF D L I L QL K+ Y + + E S H +
Sbjct: 94 KEKSSYGFVDYHDRASAALAIMTLHGRQLYGQALKVNWAYANSSREDTS------GHFNV 147
Query: 67 FVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALR-AP 125
FV L+ + TL A F + + V++D TG+S+GYGF+++++ + Q+A+
Sbjct: 148 FVGDLSPEVTDATLFACFSVYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDMT 207
Query: 126 SKLIDGRLAACNLACEGLSGPSSALDVSQRK----------------------------- 156
K + R CN A +G G S+ ++ +
Sbjct: 208 GKWLGNRQIRCNWATKGAGGSSNEEKINDSQNAVVLTNGSSDGGQDNSNEDAPENNPSYT 267
Query: 157 -LYIGSLSPEVTSEVLLSFFGRHGE--IEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAI 213
+Y+G+L +VT L F G +EE V K GFGFV Y T E A AI
Sbjct: 268 TVYVGNLPHDVTQAELHCQFHALGAGVLEEVRVQSGK------GFGFVRYNTHEEAAMAI 321
Query: 214 DDPEKTLGGRTIIVKFAGAHKGKTGQPPFPAGVPM 248
+ GR + K G PP A P+
Sbjct: 322 ----QMANGRPVRGKTMKCSWGSKPTPPGTASNPL 352
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 78/170 (45%), Gaps = 11/170 (6%)
Query: 64 RKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALR 123
R ++V + N + + L FQ G + +I + + YGF+ Y + S A+
Sbjct: 60 RSVYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKEKSS----YGFVDYHDRASAALAIM 115
Query: 124 APSKLIDGR-LAACNLACEGLSGPSSALDVSQR-KLYIGSLSPEVTSEVLLSFFGRHGEI 181
+ GR L L SS D S +++G LSPEVT L + F +
Sbjct: 116 T----LHGRQLYGQALKVNWAYANSSREDTSGHFNVFVGDLSPEVTDATLFACFSVYTTC 171
Query: 182 EEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPE-KTLGGRTIIVKFA 230
+ V +D T S+G+GFV+++ + A+ AI+D K LG R I +A
Sbjct: 172 SDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWA 221
>Medtr3g109090.2 | nucleolysin TIAR-like protein | HC |
chr3:50426599-50437301 | 20130731
Length = 440
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 71/275 (25%), Positives = 108/275 (39%), Gaps = 52/275 (18%)
Query: 10 EEATNGGFTSVED---LRLLIEPLAKPQLVDLLAKLGSQYPSIAEEIKSIASADPVHRKL 66
+E ++ GF D L I L QL K+ Y + + E S H +
Sbjct: 94 KEKSSYGFVDYHDRASAALAIMTLHGRQLYGQALKVNWAYANSSREDTS------GHFNV 147
Query: 67 FVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALR-AP 125
FV L+ + TL A F + + V++D TG+S+GYGF+++++ + Q+A+
Sbjct: 148 FVGDLSPEVTDATLFACFSVYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDMT 207
Query: 126 SKLIDGRLAACNLACEGLSGPSSALDVSQRK----------------------------- 156
K + R CN A +G G S+ ++ +
Sbjct: 208 GKWLGNRQIRCNWATKGAGGSSNEEKINDSQNAVVLTNGSSDGGQDNSNEDAPENNPSYT 267
Query: 157 -LYIGSLSPEVTSEVLLSFFGRHGE--IEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAI 213
+Y+G+L +VT L F G +EE V K GFGFV Y T E A AI
Sbjct: 268 TVYVGNLPHDVTQAELHCQFHALGAGVLEEVRVQSGK------GFGFVRYNTHEEAAMAI 321
Query: 214 DDPEKTLGGRTIIVKFAGAHKGKTGQPPFPAGVPM 248
+ GR + K G PP A P+
Sbjct: 322 ----QMANGRPVRGKTMKCSWGSKPTPPGTASNPL 352
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 78/170 (45%), Gaps = 11/170 (6%)
Query: 64 RKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALR 123
R ++V + N + + L FQ G + +I + + YGF+ Y + S A+
Sbjct: 60 RSVYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKEKSS----YGFVDYHDRASAALAIM 115
Query: 124 APSKLIDGR-LAACNLACEGLSGPSSALDVSQR-KLYIGSLSPEVTSEVLLSFFGRHGEI 181
+ GR L L SS D S +++G LSPEVT L + F +
Sbjct: 116 T----LHGRQLYGQALKVNWAYANSSREDTSGHFNVFVGDLSPEVTDATLFACFSVYTTC 171
Query: 182 EEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPE-KTLGGRTIIVKFA 230
+ V +D T S+G+GFV+++ + A+ AI+D K LG R I +A
Sbjct: 172 SDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWA 221
>Medtr3g025880.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr3:7898677-7894080 | 20130731
Length = 447
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 70/117 (59%), Gaps = 5/117 (4%)
Query: 26 LIEPLAKPQLVDLLAKLGSQYPSIAEEIKSIASADPVHRKLFVRGLAWNTSSETLCAAFQ 85
L+ A ++ L KL S PS+ + I+ +S P + KLFV G+++NT ++L AF
Sbjct: 10 LLRNAANTKITSEL-KLRSS-PSVFQAIRCFSST-P-NTKLFVGGISYNTDEQSLSDAFS 65
Query: 86 EHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALRA-PSKLIDGRLAACNLACE 141
++G++ + +I D+ +G+S+G+GF+TY +E +A++A + + GR N A E
Sbjct: 66 KYGQVLDARIIMDRESGRSKGFGFVTYNTVEEASSAIQALDGQDLYGRRVGVNFANE 122
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 154 QRKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAI 213
KL++G +S + L F ++G++ + + D+++ S+GFGFVTY T E A AI
Sbjct: 43 NTKLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEASSAI 102
Query: 214 DDPE-KTLGGRTIIVKFA 230
+ + L GR + V FA
Sbjct: 103 QALDGQDLYGRRVGVNFA 120
>Medtr3g025880.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr3:7898604-7894080 | 20130731
Length = 447
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 70/117 (59%), Gaps = 5/117 (4%)
Query: 26 LIEPLAKPQLVDLLAKLGSQYPSIAEEIKSIASADPVHRKLFVRGLAWNTSSETLCAAFQ 85
L+ A ++ L KL S PS+ + I+ +S P + KLFV G+++NT ++L AF
Sbjct: 10 LLRNAANTKITSEL-KLRSS-PSVFQAIRCFSST-P-NTKLFVGGISYNTDEQSLSDAFS 65
Query: 86 EHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALRA-PSKLIDGRLAACNLACE 141
++G++ + +I D+ +G+S+G+GF+TY +E +A++A + + GR N A E
Sbjct: 66 KYGQVLDARIIMDRESGRSKGFGFVTYNTVEEASSAIQALDGQDLYGRRVGVNFANE 122
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 154 QRKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAI 213
KL++G +S + L F ++G++ + + D+++ S+GFGFVTY T E A AI
Sbjct: 43 NTKLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEASSAI 102
Query: 214 DDPE-KTLGGRTIIVKFA 230
+ + L GR + V FA
Sbjct: 103 QALDGQDLYGRRVGVNFA 120
>Medtr8g022050.1 | nucleolysin TIAR-like protein | HC |
chr8:7704241-7709952 | 20130731
Length = 427
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 84/197 (42%), Gaps = 40/197 (20%)
Query: 63 HRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAAL 122
H +FV L+ + TL A F + + V++D+ TG+SRG+GF+++++ + Q+A+
Sbjct: 146 HYNIFVGDLSPEVTDATLFACFSVYQSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAI 205
Query: 123 R-APSKLIDGRLAACNLACEGLSGPS------------------------SALDVSQRK- 156
K + R CN A +G G S+ DV +
Sbjct: 206 NDLTGKWLGSRQIRCNWATKGAGGIEEKQNSDSKSVVELTNGSSEDGKEISSNDVPENNP 265
Query: 157 ----LYIGSLSPEVTSEVLLSFFGRHGE--IEEGSVAYDKDTNVSRGFGFVTYKTTEAAK 210
+Y+G+L E T L F G IEE V DK GFGFV Y T A
Sbjct: 266 QYTTVYVGNLGSEATQLDLHRHFHALGAGVIEEVRVQRDK------GFGFVRYSTHAEAA 319
Query: 211 KAID--DPEKTLGGRTI 225
AI + + L G+ I
Sbjct: 320 LAIQMGNAQSYLCGKII 336
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 80/174 (45%), Gaps = 12/174 (6%)
Query: 92 EGAVIYDKATGKSRGYGFITYKNMESTQ-AALRAPSKLIDGRLAACNLA-CEGLSGPSSA 149
EG ++ K + YGFI Y + S A L + + G+ N A G +S
Sbjct: 89 EGCKLFRK---EKSSYGFIHYFDRRSAALAILTLNGRHLFGQPIKVNWAYASGQREDTSG 145
Query: 150 LDVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAA 209
+++G LSPEVT L + F + + V +D+ T SRGFGFV++++ + A
Sbjct: 146 ----HYNIFVGDLSPEVTDATLFACFSVYQSCSDARVMWDQKTGRSRGFGFVSFRSQQDA 201
Query: 210 KKAIDD-PEKTLGGRTIIVKFAGAHKGKTGQPPFPAGVPMAALPMTPGYVQSGK 262
+ AI+D K LG R I +A KG G + + +T G + GK
Sbjct: 202 QSAINDLTGKWLGSRQIRCNWAT--KGAGGIEEKQNSDSKSVVELTNGSSEDGK 253
>Medtr7g102730.1 | polyadenylate-binding protein | HC |
chr7:41652502-41656607 | 20130731
Length = 629
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 82/162 (50%), Gaps = 10/162 (6%)
Query: 60 DPVHRK-----LFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKN 114
DP RK +FV+ LA + + L F++ G I V+ + GKS+GYGF+ ++
Sbjct: 89 DPDARKSCIGNVFVKNLAESIDNSGLEDMFKKFGNILSSKVVMSE-DGKSKGYGFVQFET 147
Query: 115 MESTQAAL-RAPSKLIDGRLAACNLACEGLSGPSSALDVSQRKLYIGSLSPEVTSEVLLS 173
ES AA+ R L+ + + SS D LY+ +L +++ +L
Sbjct: 148 EESANAAIERLNGYLVGDKQIYVGKFVKKSDRISSGPDTRYTNLYMKNLDLDISETLLRE 207
Query: 174 FFGRHGEIEEGSVAYDKDTN-VSRGFGFVTYKTTEAAKKAID 214
F G+I S+A KD+N +S+GFGFV + E AK+A++
Sbjct: 208 KFSSFGKII--SLAVAKDSNGMSKGFGFVNFDNPEDAKRAME 247
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 72/168 (42%), Gaps = 15/168 (8%)
Query: 60 DPVHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQ 119
D + L+++ L + S L F G+I AV D + G S+G+GF+ + N E +
Sbjct: 185 DTRYTNLYMKNLDLDISETLLREKFSSFGKIISLAVAKD-SNGMSKGFGFVNFDNPEDAK 243
Query: 120 AA------LRAPSKLIDGRLAACNLACEGL-------SGPSSALDVSQRKLYIGSLSPEV 166
A L+ SK++ A E + L +Y+ ++ V
Sbjct: 244 RAMETMNGLQLGSKILYVARAQKKAEREQILHQQFEEKRKEQVLKYKGSNIYVKNIDDNV 303
Query: 167 TSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAID 214
+ E L F G I + D D +S+GFGFV + T E A KA++
Sbjct: 304 SDEGLRDHFSVCGTITSAKIMRD-DKGISKGFGFVCFSTPEEANKAVN 350
>Medtr4g070140.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26401562-26402849 | 20130731
Length = 190
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 61 PVHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQA 120
V + FV GLAW T S+ L AF + GEI + VI D+ TG+SRG+GF+T+ +S +
Sbjct: 5 DVEYRCFVGGLAWATDSQALEQAFSKFGEITDSKVINDRETGRSRGFGFVTFAEEKSMRD 64
Query: 121 ALRAPS-KLIDGRLAACNLA 139
A+ + + IDGR N A
Sbjct: 65 AIEEMNGQDIDGRNITVNEA 84
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 156 KLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDD 215
+ ++G L+ S+ L F + GEI + V D++T SRGFGFVT+ ++ + AI++
Sbjct: 9 RCFVGGLAWATDSQALEQAFSKFGEITDSKVINDRETGRSRGFGFVTFAEEKSMRDAIEE 68
Query: 216 PE-KTLGGRTIIVK 228
+ + GR I V
Sbjct: 69 MNGQDIDGRNITVN 82
>Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527069-45523373 | 20130731
Length = 268
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 58/96 (60%), Gaps = 3/96 (3%)
Query: 47 PSIAEEIKSIASADPVHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRG 106
PS + I+ + SA KLF+ G++++T +L AF +GE+ + +I D+ TG+SRG
Sbjct: 27 PSALQAIRCMCSAPTT--KLFIGGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRG 84
Query: 107 YGFITYKNMESTQAALRA-PSKLIDGRLAACNLACE 141
+GFIT+ ++E +A++A + + GR N A E
Sbjct: 85 FGFITFNSVEEASSAIQALDGQDLHGRRVRVNYANE 120
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 156 KLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDD 215
KL+IG +S L F R+GE+ + + D++T SRGFGF+T+ + E A AI
Sbjct: 43 KLFIGGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSVEEASSAIQA 102
Query: 216 PE-KTLGGRTIIVKFA 230
+ + L GR + V +A
Sbjct: 103 LDGQDLHGRRVRVNYA 118
>Medtr1g092860.1 | RNA-binding (RRM/RBD/RNP motif) family protein,
putative | HC | chr1:41816599-41813158 | 20130731
Length = 284
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 51/77 (66%), Gaps = 1/77 (1%)
Query: 64 RKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALR 123
+KLFV GL++ TS +TL AAF+ GE+ E VI DK + +S+GY FI Y E+ AAL+
Sbjct: 192 KKLFVTGLSFYTSEKTLRAAFEGFGELVEVKVIIDKISKRSKGYAFIEYTTEEAASAALK 251
Query: 124 APS-KLIDGRLAACNLA 139
+ K+I+G + ++A
Sbjct: 252 EMNGKIINGWMIVVDVA 268
>Medtr8g092550.1 | CC1-like splicing factor | HC |
chr8:38688579-38694751 | 20130731
Length = 567
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 94/213 (44%), Gaps = 17/213 (7%)
Query: 37 DLLAKLGSQYPSIAEEIKSIASADPVHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVI 96
D + G ++ E ++ A + R +F + + + F + G++ + +I
Sbjct: 175 DFENRDGRRFRDKKENVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLI 234
Query: 97 YDKATGKSRGYGFITYKNMESTQAALRAPSKLIDGR-------LAACNLACEGLS----- 144
D+ + +S+G G+I + + S A+ +L+ G+ A NL S
Sbjct: 235 MDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNASSGAAV 294
Query: 145 -GPSSALDVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTY 203
GP A+D RKLY+G+L +T L F G+IE + D +T +GFGFV +
Sbjct: 295 VGPYGAVD---RKLYVGNLHFNMTEANLREIFEPFGQIEVVQLPLDMETGHCKGFGFVQF 351
Query: 204 KTTEAAKKAID-DPEKTLGGRTIIVKFAGAHKG 235
E AK A + + + GRTI V H G
Sbjct: 352 AHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHVG 384
>Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:36253866-36255120 | 20130731
Length = 135
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 65 KLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALRA 124
KLFV GL+W+ ++L AF G++ E ++YDK +G++RG+GF+ + N ++ ++A A
Sbjct: 37 KLFVGGLSWSVDEKSLKDAFSSFGDVTEVRIVYDKDSGRARGFGFVIFSNEDAAKSAKDA 96
Query: 125 -PSKLIDGRLAACNLACE 141
K + GR N A E
Sbjct: 97 MDGKALLGRPLRINFALE 114
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 156 KLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDD 215
KL++G LS V + L F G++ E + YDKD+ +RGFGFV + +AAK A D
Sbjct: 37 KLFVGGLSWSVDEKSLKDAFSSFGDVTEVRIVYDKDSGRARGFGFVIFSNEDAAKSAKDA 96
Query: 216 PE-KTLGGRTIIVKFA 230
+ K L GR + + FA
Sbjct: 97 MDGKALLGRPLRINFA 112
>Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:37961723-37963823 | 20130731
Length = 146
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 45/68 (66%)
Query: 65 KLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALRA 124
KLF+ GL++N ++L AF +G++ E VI D+ TG+SRG+GF+ + + ES +AL
Sbjct: 37 KLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSALSM 96
Query: 125 PSKLIDGR 132
+ ++GR
Sbjct: 97 DGQDLNGR 104
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 46/83 (55%)
Query: 152 VSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKK 211
+S KL+IG LS V + L F +G++ E V D++T SRGFGFV + + E+A
Sbjct: 33 MSSSKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATS 92
Query: 212 AIDDPEKTLGGRTIIVKFAGAHK 234
A+ + L GR I V +A +
Sbjct: 93 ALSMDGQDLNGRNIRVSYANDRQ 115
>Medtr2g022950.1 | polyadenylate-binding protein RBP47B | HC |
chr2:7987418-7992129 | 20130731
Length = 401
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 77/169 (45%), Gaps = 6/169 (3%)
Query: 57 ASADPVHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNME 116
ASAD V R L++ L + L F GE+ VI +K T +S GYGFI +
Sbjct: 54 ASADEV-RTLWIGDLQYWMDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFNTRA 112
Query: 117 STQAALRAPSKLI---DGRLAACNLACEGLSGPSSALDVS-QRKLYIGSLSPEVTSEVLL 172
+ + L+ + I G+ N A SS D +++G L+ +VT +L
Sbjct: 113 TAERVLQTYNGTIMPNGGQNYRLNWATFSAGERSSRQDDGPDHTIFVGDLAADVTDYLLQ 172
Query: 173 -SFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPEKTL 220
+F R+ ++ V D+ T S+G+GFV + +A+ + + L
Sbjct: 173 ETFRARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMTEMQGVL 221
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 83/197 (42%), Gaps = 23/197 (11%)
Query: 50 AEEIKSIASADPVHRKLFVRGLAWNTSSETLCAAFQ-EHGEIEEGAVIYDKATGKSRGYG 108
A E S P H +FV LA + + L F+ + ++ V+ D+ TG+S+GYG
Sbjct: 142 AGERSSRQDDGPDH-TIFVGDLAADVTDYLLQETFRARYNSVKGAKVVIDRLTGRSKGYG 200
Query: 109 FITYKN-------MESTQAALRAPSKLIDGRLAACNLACEGL-------SGPSSALDVSQ 154
F+ + + M Q L + + G N A SG S D +
Sbjct: 201 FVRFADEGEQMRAMTEMQGVLCSTRPMRIGPATNKNPAATTQPKASYNPSGGQSENDPNN 260
Query: 155 RKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAID 214
+++G+L P VT + L F ++GE+ + K GFV + A++AI
Sbjct: 261 TTIFVGNLDPNVTDDHLRQVFTQYGELVHVKIPSGKRC------GFVQFSDRSCAEEAIR 314
Query: 215 DPEKT-LGGRTIIVKFA 230
T LGG+ + + +
Sbjct: 315 VLNGTLLGGQNVRLSWG 331
>Medtr3g095230.1 | CC1-like splicing factor | LC |
chr3:43513030-43521003 | 20130731
Length = 587
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 87/194 (44%), Gaps = 20/194 (10%)
Query: 59 ADPV--HRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNME 116
ADP R +F + + + F + G++ + +I D+ + +S+G G+I + +
Sbjct: 208 ADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAM 267
Query: 117 STQAALRAPSKLIDGR-------LAACNLA-------CEGLSGPSSALDVSQRKLYIGSL 162
S A+ +L+ G+ A NL G+ GP A+D RKLY+G+L
Sbjct: 268 SVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTTTGAAGVVGPYGAVD---RKLYVGNL 324
Query: 163 SPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAID-DPEKTLG 221
+T L F G +E + D +T +GFGF+ + E AK A + + +
Sbjct: 325 HFNMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHAKAAQSLNGKLEIA 384
Query: 222 GRTIIVKFAGAHKG 235
GRTI V H G
Sbjct: 385 GRTIKVSSVADHIG 398
>Medtr3g095230.2 | CC1-like splicing factor | LC |
chr3:43513031-43520987 | 20130731
Length = 576
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 87/194 (44%), Gaps = 20/194 (10%)
Query: 59 ADPV--HRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNME 116
ADP R +F + + + F + G++ + +I D+ + +S+G G+I + +
Sbjct: 208 ADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAM 267
Query: 117 STQAALRAPSKLIDGR-------LAACNLA-------CEGLSGPSSALDVSQRKLYIGSL 162
S A+ +L+ G+ A NL G+ GP A+D RKLY+G+L
Sbjct: 268 SVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTTTGAAGVVGPYGAVD---RKLYVGNL 324
Query: 163 SPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAID-DPEKTLG 221
+T L F G +E + D +T +GFGF+ + E AK A + + +
Sbjct: 325 HFNMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHAKAAQSLNGKLEIA 384
Query: 222 GRTIIVKFAGAHKG 235
GRTI V H G
Sbjct: 385 GRTIKVSSVADHIG 398
>Medtr3g095230.3 | CC1-like splicing factor | LC |
chr3:43513031-43520279 | 20130731
Length = 576
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 87/194 (44%), Gaps = 20/194 (10%)
Query: 59 ADPV--HRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNME 116
ADP R +F + + + F + G++ + +I D+ + +S+G G+I + +
Sbjct: 208 ADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAM 267
Query: 117 STQAALRAPSKLIDGR-------LAACNLA-------CEGLSGPSSALDVSQRKLYIGSL 162
S A+ +L+ G+ A NL G+ GP A+D RKLY+G+L
Sbjct: 268 SVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTTTGAAGVVGPYGAVD---RKLYVGNL 324
Query: 163 SPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAID-DPEKTLG 221
+T L F G +E + D +T +GFGF+ + E AK A + + +
Sbjct: 325 HFNMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHAKAAQSLNGKLEIA 384
Query: 222 GRTIIVKFAGAHKG 235
GRTI V H G
Sbjct: 385 GRTIKVSSVADHIG 398
>Medtr2g022950.4 | polyadenylate-binding protein RBP47B | HC |
chr2:7987476-7991101 | 20130731
Length = 271
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 77/169 (45%), Gaps = 6/169 (3%)
Query: 57 ASADPVHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNME 116
ASAD V R L++ L + L F GE+ VI +K T +S GYGFI +
Sbjct: 54 ASADEV-RTLWIGDLQYWMDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFNTRA 112
Query: 117 STQAALRAPSKLI---DGRLAACNLACEGLSGPSSALDVS-QRKLYIGSLSPEVTSEVLL 172
+ + L+ + I G+ N A SS D +++G L+ +VT +L
Sbjct: 113 TAERVLQTYNGTIMPNGGQNYRLNWATFSAGERSSRQDDGPDHTIFVGDLAADVTDYLLQ 172
Query: 173 -SFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPEKTL 220
+F R+ ++ V D+ T S+G+GFV + +A+ + + L
Sbjct: 173 ETFRARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMTEMQGVL 221
>Medtr2g022950.3 | polyadenylate-binding protein RBP47B | HC |
chr2:7987476-7991094 | 20130731
Length = 271
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 77/169 (45%), Gaps = 6/169 (3%)
Query: 57 ASADPVHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNME 116
ASAD V R L++ L + L F GE+ VI +K T +S GYGFI +
Sbjct: 54 ASADEV-RTLWIGDLQYWMDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFNTRA 112
Query: 117 STQAALRAPSKLI---DGRLAACNLACEGLSGPSSALDVS-QRKLYIGSLSPEVTSEVLL 172
+ + L+ + I G+ N A SS D +++G L+ +VT +L
Sbjct: 113 TAERVLQTYNGTIMPNGGQNYRLNWATFSAGERSSRQDDGPDHTIFVGDLAADVTDYLLQ 172
Query: 173 -SFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPEKTL 220
+F R+ ++ V D+ T S+G+GFV + +A+ + + L
Sbjct: 173 ETFRARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMTEMQGVL 221
>Medtr7g105260.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:42674424-42676547 | 20130731
Length = 140
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Query: 65 KLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAAL-R 123
KLFV GL+++T+ +TL AF +G++ E VI D+ + KS+GYGF+T+ + + + A+
Sbjct: 33 KLFVGGLSFHTTEKTLSDAFSNYGQVVEAKVITDRISEKSKGYGFVTFASQDEAEKAITE 92
Query: 124 APSKLIDGRLAACNLA 139
K ++GR+ + A
Sbjct: 93 MNEKALNGRVVFVDYA 108
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
Query: 156 KLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDD 215
KL++G LS T + L F +G++ E V D+ + S+G+GFVT+ + + A+KAI +
Sbjct: 33 KLFVGGLSFHTTEKTLSDAFSNYGQVVEAKVITDRISEKSKGYGFVTFASQDEAEKAITE 92
Query: 216 -PEKTLGGRTIIVKFAGAHKGKTGQPPFPAGVP 247
EK L GR + V +A ++ P G P
Sbjct: 93 MNEKALNGRVVFVDYAKPDTKRSMGMPIARGPP 125
>Medtr2g022950.2 | polyadenylate-binding protein RBP47B | HC |
chr2:7987476-7990818 | 20130731
Length = 284
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 77/169 (45%), Gaps = 6/169 (3%)
Query: 57 ASADPVHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNME 116
ASAD V R L++ L + L F GE+ VI +K T +S GYGFI +
Sbjct: 54 ASADEV-RTLWIGDLQYWMDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFNTRA 112
Query: 117 STQAALRAPSKLI---DGRLAACNLACEGLSGPSSALDVS-QRKLYIGSLSPEVTSEVLL 172
+ + L+ + I G+ N A SS D +++G L+ +VT +L
Sbjct: 113 TAERVLQTYNGTIMPNGGQNYRLNWATFSAGERSSRQDDGPDHTIFVGDLAADVTDYLLQ 172
Query: 173 -SFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPEKTL 220
+F R+ ++ V D+ T S+G+GFV + +A+ + + L
Sbjct: 173 ETFRARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMTEMQGVL 221
>Medtr3g084040.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:37961794-37963766 | 20130731
Length = 105
Score = 60.1 bits (144), Expect = 3e-09, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 43/65 (66%)
Query: 65 KLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALRA 124
KLF+ GL++N ++L AF +G++ E VI D+ TG+SRG+GF+ + + ES +AL
Sbjct: 37 KLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSALSM 96
Query: 125 PSKLI 129
+++
Sbjct: 97 DGQVV 101
Score = 52.8 bits (125), Expect = 5e-07, Method: Composition-based stats.
Identities = 30/94 (31%), Positives = 50/94 (53%), Gaps = 10/94 (10%)
Query: 139 ACEGLSGPSSAL-----DVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTN 193
A + P S++ +S KL+IG LS V + L F +G++ E V D++T
Sbjct: 15 ATQSTQAPVSSMLNYLRHMSSSKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETG 74
Query: 194 VSRGFGFVTYKTTEAAKKAIDDPEKTLGGRTIIV 227
SRGFGFV + + E+A A+ ++ G+ +I+
Sbjct: 75 RSRGFGFVNFTSEESATSAL-----SMDGQVVIL 103
>Medtr2g097960.1 | polyadenylate-binding protein RBP47B | HC |
chr2:41853094-41847353 | 20130731
Length = 428
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 70/159 (44%), Gaps = 11/159 (6%)
Query: 64 RKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALR 123
R L++ L + L F GE+ +I +K TG+ GYGFI + + + + L+
Sbjct: 15 RTLWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAERVLQ 74
Query: 124 A------PSKLIDGRLAACNLACEGLSGPSSALDVSQRKLYIGSLSPEVTSEVLLSFFGR 177
P RL + G P + D S +++G L+P+VT +L F
Sbjct: 75 TYNGTQMPGTEQTFRLNWASFGI-GERRPDAGPDHS---IFVGDLAPDVTDYLLQETFRT 130
Query: 178 H-GEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDD 215
H G + V D +T S+G+GFV + +A+ +
Sbjct: 131 HYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSE 169
>Medtr3g448370.3 | RNA recognition motif 2 in plant MEI2-like
protein | HC | chr3:16170586-16165028 | 20130731
Length = 751
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 75/308 (24%), Positives = 127/308 (41%), Gaps = 41/308 (13%)
Query: 1 MEDLKKRKLEEATNGGF-TSVEDLRLLIEPLAKPQLVDLLAKLGSQYPSIAEEIKSIASA 59
+EDL + L GGF E L ++K + D +A G +I + ++A
Sbjct: 26 LEDLDENDLF-VNGGGFEMDFEPQEGLSFGISKMSISDGIASNGIGPYAIPNGVGTVAGE 84
Query: 60 DPV----HRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNM 115
P R LFVR + N L F+++G+I +Y K RG+ I+Y ++
Sbjct: 85 HPYGEHPSRTLFVRNINSNVEDSELRTLFEQYGDIR---TLYTAC--KHRGFVMISYYDI 139
Query: 116 ESTQAALRA-PSKLIDGRLAACNLACEGLSGPSSALDVSQRKLYIGSLSPEVTSEVLLSF 174
+ + A+RA +K + R + + PS D++Q L + +L P V+++ L
Sbjct: 140 RAARTAMRALQNKPLRRRKLDIHFSIPK-DNPSEK-DINQGTLVVFNLDPSVSNDDLRQI 197
Query: 175 FGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPEKT-LGGRTIIVKFAGAH 233
FG +GE++E ++T R F+ + AA A+ ++ + G+ I +
Sbjct: 198 FGAYGEVKE-----IRETPHKRHHKFIEFYDVRAADAALKALNRSDIAGKRIKL------ 246
Query: 234 KGKTGQPPFPAGVPMAALPMTPGYV----------QSGKPHISSAPSVGYTYPQPVAPYP 283
+P P G + + Q G P +S P + PV P P
Sbjct: 247 -----EPSRPGGARRNLMQQLSQELEQDEARTFRSQVGSPIANSPPGSWAHFGSPVDPNP 301
Query: 284 LASYPIPP 291
L SY P
Sbjct: 302 LGSYSKSP 309
>Medtr3g448370.5 | RNA recognition motif 2 in plant MEI2-like
protein | HC | chr3:16171071-16165361 | 20130731
Length = 876
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 75/308 (24%), Positives = 127/308 (41%), Gaps = 41/308 (13%)
Query: 1 MEDLKKRKLEEATNGGF-TSVEDLRLLIEPLAKPQLVDLLAKLGSQYPSIAEEIKSIASA 59
+EDL + L GGF E L ++K + D +A G +I + ++A
Sbjct: 131 LEDLDENDLF-VNGGGFEMDFEPQEGLSFGISKMSISDGIASNGIGPYAIPNGVGTVAGE 189
Query: 60 DPV----HRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNM 115
P R LFVR + N L F+++G+I +Y K RG+ I+Y ++
Sbjct: 190 HPYGEHPSRTLFVRNINSNVEDSELRTLFEQYGDIR---TLYTAC--KHRGFVMISYYDI 244
Query: 116 ESTQAALRA-PSKLIDGRLAACNLACEGLSGPSSALDVSQRKLYIGSLSPEVTSEVLLSF 174
+ + A+RA +K + R + + PS D++Q L + +L P V+++ L
Sbjct: 245 RAARTAMRALQNKPLRRRKLDIHFSIPK-DNPSEK-DINQGTLVVFNLDPSVSNDDLRQI 302
Query: 175 FGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPEKT-LGGRTIIVKFAGAH 233
FG +GE++E ++T R F+ + AA A+ ++ + G+ I +
Sbjct: 303 FGAYGEVKE-----IRETPHKRHHKFIEFYDVRAADAALKALNRSDIAGKRIKL------ 351
Query: 234 KGKTGQPPFPAGVPMAALPMTPGYV----------QSGKPHISSAPSVGYTYPQPVAPYP 283
+P P G + + Q G P +S P + PV P P
Sbjct: 352 -----EPSRPGGARRNLMQQLSQELEQDEARTFRSQVGSPIANSPPGSWAHFGSPVDPNP 406
Query: 284 LASYPIPP 291
L SY P
Sbjct: 407 LGSYSKSP 414
>Medtr4g109540.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527062-45523373 | 20130731
Length = 276
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 58/104 (55%), Gaps = 11/104 (10%)
Query: 47 PSIAEEIKSIASADPVHRKLF--------VRGLAWNTSSETLCAAFQEHGEIEEGAVIYD 98
PS + I+ + SA KLF V G++++T +L AF +GE+ + +I D
Sbjct: 27 PSALQAIRCMCSAPTT--KLFIGGILHLSVAGVSYSTDENSLREAFSRYGEVLDARIIMD 84
Query: 99 KATGKSRGYGFITYKNMESTQAALRA-PSKLIDGRLAACNLACE 141
+ TG+SRG+GFIT+ ++E +A++A + + GR N A E
Sbjct: 85 RETGRSRGFGFITFNSVEEASSAIQALDGQDLHGRRVRVNYANE 128
>Medtr4g085540.1 | polyadenylate-binding protein | HC |
chr4:33416965-33423437 | 20130731
Length = 654
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 71/165 (43%), Gaps = 21/165 (12%)
Query: 65 KLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALRA 124
+FV+ L+ +T+ + L F E G I V+ D GKS+ +GF+ N EST A RA
Sbjct: 214 NVFVKNLSESTTDDELKKTFGEFGTITSAVVMRD-GDGKSKCFGFV---NFESTDDAARA 269
Query: 125 PSKL----IDGRLAAC-----------NLACEGLSGPSSALDVSQ-RKLYIGSLSPEVTS 168
L ID + L + A D Q LY+ +L +
Sbjct: 270 VEALNGKKIDDKEWYVGKAQKKSEREHELKIKFEQSMKEAADKYQGANLYVKNLDDSIAD 329
Query: 169 EVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAI 213
E L F +G I V D + VSRG GFV + T E A +A+
Sbjct: 330 EKLKELFSSYGTITSCKVMRDPN-GVSRGSGFVAFSTPEEASRAL 373
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 68/158 (43%), Gaps = 14/158 (8%)
Query: 62 VHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAA 121
V L+V L N + L F + G++ V D T +S GYG++ Y N + A
Sbjct: 32 VTTSLYVGDLDMNVTDSQLYDLFNQLGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARA 91
Query: 122 LRAPSKLIDGRLAACNLACEGLSGPSSALDVSQRK-----LYIGSLSPEVTSEVLLSFFG 176
L L L + S D S RK ++I +L + + L F
Sbjct: 92 LDV--------LNFTPLNNRPIRIMYSHRDPSIRKSGQGNIFIKNLDKAIDHKALHDTFS 143
Query: 177 RHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAID 214
G I VA D + S+G+GFV + T EAA+KAI+
Sbjct: 144 SFGNILSCKVAVD-GSGQSKGYGFVQFDTEEAAQKAIE 180
>Medtr5g029900.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:12578318-12572596 | 20130731
Length = 518
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 90/219 (41%), Gaps = 26/219 (11%)
Query: 60 DPVHRKLFVRGLAWNTSSETLCAAFQEHGEIE----------------EGAVIYDKATGK 103
D + R +FV L +TL F+ GE+E +GA++ K +
Sbjct: 182 DKLLRTIFVGNLPVKVKKKTLLKEFKVFGEVESVRIRSVPLQDTKKPRKGAILAKKISET 241
Query: 104 SRGYG-FITYKNMESTQAALRAPSKLIDGRLAACNLAC---EGLSGPSSALDVSQRKLYI 159
+ +I +K ES QA+L ++DG + AC + L G S+ L ++R +++
Sbjct: 242 AESVNAYIVFKTEESAQASLSHNMTVVDGNHIRVDRACPPRKKLKGDSAPLYDNKRTVFV 301
Query: 160 GSLSPEVTSEVLLSFF----GRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDD 215
G+L +V E L F IE V D NV +G + +KT +AA +
Sbjct: 302 GNLPFDVKDEELYQLFCGIPSLESSIEAIRVVRDPHLNVGKGIAYALFKTRDAALSVVRK 361
Query: 216 PEKTLGGRTIIVKFAGAHKGKT--GQPPFPAGVPMAALP 252
L R + V A A T +P PA P P
Sbjct: 362 RSLMLRDRELRVSIAKADPSATPSKRPYSPAARPSHGKP 400
>Medtr3g448370.4 | RNA recognition motif 2 in plant MEI2-like
protein | HC | chr3:16172198-16165028 | 20130731
Length = 867
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 75/308 (24%), Positives = 127/308 (41%), Gaps = 41/308 (13%)
Query: 1 MEDLKKRKLEEATNGGF-TSVEDLRLLIEPLAKPQLVDLLAKLGSQYPSIAEEIKSIASA 59
+EDL + L GGF E L ++K + D +A G +I + ++A
Sbjct: 142 LEDLDENDLF-VNGGGFEMDFEPQEGLSFGISKMSISDGIASNGIGPYAIPNGVGTVAGE 200
Query: 60 DPV----HRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNM 115
P R LFVR + N L F+++G+I +Y K RG+ I+Y ++
Sbjct: 201 HPYGEHPSRTLFVRNINSNVEDSELRTLFEQYGDIR---TLYTAC--KHRGFVMISYYDI 255
Query: 116 ESTQAALRA-PSKLIDGRLAACNLACEGLSGPSSALDVSQRKLYIGSLSPEVTSEVLLSF 174
+ + A+RA +K + R + + PS D++Q L + +L P V+++ L
Sbjct: 256 RAARTAMRALQNKPLRRRKLDIHFSIPK-DNPSEK-DINQGTLVVFNLDPSVSNDDLRQI 313
Query: 175 FGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPEKT-LGGRTIIVKFAGAH 233
FG +GE++E ++T R F+ + AA A+ ++ + G+ I +
Sbjct: 314 FGAYGEVKE-----IRETPHKRHHKFIEFYDVRAADAALKALNRSDIAGKRIKL------ 362
Query: 234 KGKTGQPPFPAGVPMAALPMTPGYV----------QSGKPHISSAPSVGYTYPQPVAPYP 283
+P P G + + Q G P +S P + PV P P
Sbjct: 363 -----EPSRPGGARRNLMQQLSQELEQDEARTFRSQVGSPIANSPPGSWAHFGSPVDPNP 417
Query: 284 LASYPIPP 291
L SY P
Sbjct: 418 LGSYSKSP 425
>Medtr3g448370.1 | RNA recognition motif 2 in plant MEI2-like
protein | HC | chr3:16171071-16165028 | 20130731
Length = 856
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 75/308 (24%), Positives = 127/308 (41%), Gaps = 41/308 (13%)
Query: 1 MEDLKKRKLEEATNGGF-TSVEDLRLLIEPLAKPQLVDLLAKLGSQYPSIAEEIKSIASA 59
+EDL + L GGF E L ++K + D +A G +I + ++A
Sbjct: 131 LEDLDENDLF-VNGGGFEMDFEPQEGLSFGISKMSISDGIASNGIGPYAIPNGVGTVAGE 189
Query: 60 DPV----HRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNM 115
P R LFVR + N L F+++G+I +Y K RG+ I+Y ++
Sbjct: 190 HPYGEHPSRTLFVRNINSNVEDSELRTLFEQYGDIR---TLYTAC--KHRGFVMISYYDI 244
Query: 116 ESTQAALRA-PSKLIDGRLAACNLACEGLSGPSSALDVSQRKLYIGSLSPEVTSEVLLSF 174
+ + A+RA +K + R + + PS D++Q L + +L P V+++ L
Sbjct: 245 RAARTAMRALQNKPLRRRKLDIHFSIPK-DNPSEK-DINQGTLVVFNLDPSVSNDDLRQI 302
Query: 175 FGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPEKT-LGGRTIIVKFAGAH 233
FG +GE++E ++T R F+ + AA A+ ++ + G+ I +
Sbjct: 303 FGAYGEVKE-----IRETPHKRHHKFIEFYDVRAADAALKALNRSDIAGKRIKL------ 351
Query: 234 KGKTGQPPFPAGVPMAALPMTPGYV----------QSGKPHISSAPSVGYTYPQPVAPYP 283
+P P G + + Q G P +S P + PV P P
Sbjct: 352 -----EPSRPGGARRNLMQQLSQELEQDEARTFRSQVGSPIANSPPGSWAHFGSPVDPNP 406
Query: 284 LASYPIPP 291
L SY P
Sbjct: 407 LGSYSKSP 414
>Medtr3g448370.2 | RNA recognition motif 2 in plant MEI2-like
protein | HC | chr3:16171071-16165028 | 20130731
Length = 853
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 75/308 (24%), Positives = 127/308 (41%), Gaps = 41/308 (13%)
Query: 1 MEDLKKRKLEEATNGGF-TSVEDLRLLIEPLAKPQLVDLLAKLGSQYPSIAEEIKSIASA 59
+EDL + L GGF E L ++K + D +A G +I + ++A
Sbjct: 128 LEDLDENDLF-VNGGGFEMDFEPQEGLSFGISKMSISDGIASNGIGPYAIPNGVGTVAGE 186
Query: 60 DPV----HRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNM 115
P R LFVR + N L F+++G+I +Y K RG+ I+Y ++
Sbjct: 187 HPYGEHPSRTLFVRNINSNVEDSELRTLFEQYGDIR---TLYTAC--KHRGFVMISYYDI 241
Query: 116 ESTQAALRA-PSKLIDGRLAACNLACEGLSGPSSALDVSQRKLYIGSLSPEVTSEVLLSF 174
+ + A+RA +K + R + + PS D++Q L + +L P V+++ L
Sbjct: 242 RAARTAMRALQNKPLRRRKLDIHFSIPK-DNPSEK-DINQGTLVVFNLDPSVSNDDLRQI 299
Query: 175 FGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPEKT-LGGRTIIVKFAGAH 233
FG +GE++E ++T R F+ + AA A+ ++ + G+ I +
Sbjct: 300 FGAYGEVKE-----IRETPHKRHHKFIEFYDVRAADAALKALNRSDIAGKRIKL------ 348
Query: 234 KGKTGQPPFPAGVPMAALPMTPGYV----------QSGKPHISSAPSVGYTYPQPVAPYP 283
+P P G + + Q G P +S P + PV P P
Sbjct: 349 -----EPSRPGGARRNLMQQLSQELEQDEARTFRSQVGSPIANSPPGSWAHFGSPVDPNP 403
Query: 284 LASYPIPP 291
L SY P
Sbjct: 404 LGSYSKSP 411
>Medtr4g063560.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:23466507-23467712 | 20130731
Length = 112
Score = 58.2 bits (139), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/80 (38%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
Query: 65 KLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALRA 124
KLF+ GL++NT+ L F++HG+I E VI + TG+S+GYGF+ + N E+ A R
Sbjct: 34 KLFIAGLSYNTNETVLRDTFEQHGQIIEVKVICNHRTGESKGYGFVRF-NSETAAATARK 92
Query: 125 P--SKLIDGRLAACNLACEG 142
+++DGR A +G
Sbjct: 93 ELHGQIVDGRRIRVGYAHKG 112
>Medtr7g109810.2 | flowering time control FCA-like protein | HC |
chr7:44985779-44978011 | 20130731
Length = 385
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 73/286 (25%), Positives = 109/286 (38%), Gaps = 61/286 (21%)
Query: 63 HRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAAL 122
H K++V + S + FQ +G I E ++ DKATG +G + Y + A+
Sbjct: 73 HVKVYVAPVPRTASEADVRLVFQGYGTIVEVVLLRDKATGVRQGSCLVKYSTFDEADMAI 132
Query: 123 RAPS--------------KLIDGRLAACNLA--CEGLSGPSSALDVSQRKLYIGSLSPEV 166
+A S + D + L C+ + V K+Y+G ++ E
Sbjct: 133 KALSNQYTFPGESSPVVVRFADRKRERFGLRDFCQNMERRDPPEVVG--KVYVGCINNEA 190
Query: 167 TSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPEKTLGGRT-- 224
+ + + F +G IE+ V + RG+GFV + E A AI ++T R
Sbjct: 191 SKQEIEEIFSPYGHIEDVVVLRN------RGYGFVKFYNREMALAAIKGLDRTFTMRGCD 244
Query: 225 --IIVKF-----------------AGAHKGKTGQPPFPAGVPMAALPMTPGYVQSGKPHI 265
+IV+F A A G + Q P +P P T G PH
Sbjct: 245 QPLIVRFAEPKKPRMGELRGNYLPANASYGPSSQEPAAWPLPNFCDPNTGGSNMHIAPHH 304
Query: 266 SSAP--SVGYTYP--QPVAP-----YP-------LASYPIPPLTAP 295
S P V P QPVA +P L S P+ PL AP
Sbjct: 305 SRLPHQQVNAHIPNWQPVATVVQQQFPPQHVHSQLTSMPLRPLQAP 350
>Medtr3g102040.1 | polyadenylate-binding protein | HC |
chr3:47012095-47003272 | 20130731
Length = 622
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 69/150 (46%), Gaps = 8/150 (5%)
Query: 60 DPVHRK-----LFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKN 114
DP RK +F++ L + L F G I + D A+G S+GYGF+ ++N
Sbjct: 103 DPSVRKSGAANIFIKNLDRAIDHKALYDTFSIFGNILSCKIAMD-ASGLSKGYGFVQFEN 161
Query: 115 MESTQAAL-RAPSKLIDGRLAACNLACEGLSGPSSALDVSQRKLYIGSLSPEVTSEVLLS 173
ES Q+A+ + L++ + ++ + +Y+ +LS VT + L +
Sbjct: 162 EESAQSAIDKLNGMLLNDKPVYVGHFQRKQDRDNALSNAKFNNVYVKNLSESVTDDDLKN 221
Query: 174 FFGRHGEIEEGSVAYDKDTNVSRGFGFVTY 203
FG +G I V D D S+ FGFV +
Sbjct: 222 TFGEYGTITSAVVMRDVDGK-SKCFGFVNF 250
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 105/255 (41%), Gaps = 47/255 (18%)
Query: 64 RKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALR 123
++V+ L+ + + + L F E+G I V+ D GKS+ +GF+ ++N ++ A+
Sbjct: 203 NNVYVKNLSESVTDDDLKNTFGEYGTITSAVVMRD-VDGKSKCFGFVNFENADAAAEAVE 261
Query: 124 APS-KLIDGRLAACNLACEGLSGPSSALDVSQR---------------KLYIGSLSPEVT 167
A + K D + A L L++ +R LY+ +L VT
Sbjct: 262 ALNGKKFDDKEWYVGKA---LKKYERELELKERHEQSMKETVDKFYGANLYLKNLDDSVT 318
Query: 168 SEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPE-KTLGGRTII 226
E L F G + + D +SRG GFV + T E A +A+ + K + G+ +
Sbjct: 319 DEKLSELFSEFGTVTSCKILRDP-QGISRGSGFVAFSTPEEATRALAEMNGKMVAGKPLY 377
Query: 227 VKFAGAHKGKTGQ--------------------PPFPAGVPMAALPMTPGYVQSGKPHIS 266
V A + + + P +PAGVP + Y Q+ IS
Sbjct: 378 VAPAQKKEERKARLQAQFSQVRPVTMAPIAPRLPFYPAGVP--GMGQQIMYGQAPPAFIS 435
Query: 267 SAPSVGYTYPQPVAP 281
A G+ YPQ + P
Sbjct: 436 QA---GFGYPQQLVP 447
>Medtr7g107580.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:43890650-43885583 | 20130731
Length = 362
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 94/205 (45%), Gaps = 28/205 (13%)
Query: 49 IAEEIKSIASADPVHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYG 108
+AE + S + KLFV + + + + L F+E ++E +I DKAT SRG
Sbjct: 1 MAETKEESKSNNEESVKLFVGQVPKHMTEDELLTLFKEFAIVDEVNIIKDKATRASRGCC 60
Query: 109 FITYKNMESTQAALRAPSKLIDGRLAACNLACEGLSGPSSALDVS---------QRKLYI 159
F+ + + A+ AC+ + L G SS L V + KL+I
Sbjct: 61 FVICPSRDEADKAVN-----------ACHNK-KTLPGASSPLQVKYADGELERLEHKLFI 108
Query: 160 GSLSPEVTSEVLLS-FFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTE---AAKKAIDD 215
G L P+ SEV +S F ++G I++ + S+G F+ Y+T E AA +AI+
Sbjct: 109 GML-PKNISEVEVSALFSKYGTIKDLQI-LRGSQQTSKGCAFLKYETKEQALAALEAING 166
Query: 216 PEKTLGGRT-IIVKFAGAHKGKTGQ 239
K G ++VK+A K + +
Sbjct: 167 KHKMEGSSVPLVVKWADTEKERQAR 191
>Medtr7g109810.1 | flowering time control FCA-like protein | HC |
chr7:44985779-44978011 | 20130731
Length = 498
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 73/286 (25%), Positives = 109/286 (38%), Gaps = 61/286 (21%)
Query: 63 HRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAAL 122
H K++V + S + FQ +G I E ++ DKATG +G + Y + A+
Sbjct: 73 HVKVYVAPVPRTASEADVRLVFQGYGTIVEVVLLRDKATGVRQGSCLVKYSTFDEADMAI 132
Query: 123 RAPS--------------KLIDGRLAACNLA--CEGLSGPSSALDVSQRKLYIGSLSPEV 166
+A S + D + L C+ + V K+Y+G ++ E
Sbjct: 133 KALSNQYTFPGESSPVVVRFADRKRERFGLRDFCQNMERRDPPEVVG--KVYVGCINNEA 190
Query: 167 TSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPEKTLGGRT-- 224
+ + + F +G IE+ V + RG+GFV + E A AI ++T R
Sbjct: 191 SKQEIEEIFSPYGHIEDVVVLRN------RGYGFVKFYNREMALAAIKGLDRTFTMRGCD 244
Query: 225 --IIVKF-----------------AGAHKGKTGQPPFPAGVPMAALPMTPGYVQSGKPHI 265
+IV+F A A G + Q P +P P T G PH
Sbjct: 245 QPLIVRFAEPKKPRMGELRGNYLPANASYGPSSQEPAAWPLPNFCDPNTGGSNMHIAPHH 304
Query: 266 SSAP--SVGYTYP--QPVA-----PYP-------LASYPIPPLTAP 295
S P V P QPVA +P L S P+ PL AP
Sbjct: 305 SRLPHQQVNAHIPNWQPVATVVQQQFPPQHVHSQLTSMPLRPLQAP 350
>Medtr7g107580.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:43890585-43885643 | 20130731
Length = 434
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 90/200 (45%), Gaps = 27/200 (13%)
Query: 49 IAEEIKSIASADPVHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYG 108
+AE + S + KLFV + + + + L F+E ++E +I DKAT SRG
Sbjct: 1 MAETKEESKSNNEESVKLFVGQVPKHMTEDELLTLFKEFAIVDEVNIIKDKATRASRGCC 60
Query: 109 FITYKNMESTQAALRAPSKLIDGRLAACNLACEGLSGPSSALDVS---------QRKLYI 159
F+ + + A+ AC+ + L G SS L V + KL+I
Sbjct: 61 FVICPSRDEADKAVN-----------ACHNK-KTLPGASSPLQVKYADGELERLEHKLFI 108
Query: 160 GSLSPEVTSEVLLS-FFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTE---AAKKAIDD 215
G L P+ SEV +S F ++G I++ + G F+ Y+T E AA +AI+
Sbjct: 109 GML-PKNISEVEVSALFSKYGTIKDLQILRGSQQTSKVGCAFLKYETKEQALAALEAING 167
Query: 216 PEKTLGGRT-IIVKFAGAHK 234
K G ++VK+A K
Sbjct: 168 KHKMEGSSVPLVVKWADTEK 187
>Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3990787-3988732 | 20130731
Length = 148
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 54/96 (56%), Gaps = 11/96 (11%)
Query: 138 LACEGLSGPSSALDVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRG 197
LA + + SSA KLY+G +S L F R+G++ + V D++ S+G
Sbjct: 29 LAFQAIRSMSSA------KLYVGGISYSTDDAGLRESFARYGDVLDARVIIDREQGRSKG 82
Query: 198 FGFVTYKTTE---AAKKAIDDPEKTLGGRTIIVKFA 230
FGFVT+ T+E AA +A+D+ E L GRT+ V +A
Sbjct: 83 FGFVTFATSEEASAALQAMDNQE--LHGRTVRVNYA 116
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 55/92 (59%), Gaps = 6/92 (6%)
Query: 51 EEIKSIASADPVHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFI 110
+ I+S++SA KL+V G++++T L +F +G++ + VI D+ G+S+G+GF+
Sbjct: 32 QAIRSMSSA-----KLYVGGISYSTDDAGLRESFARYGDVLDARVIIDREQGRSKGFGFV 86
Query: 111 TYKNMESTQAALRA-PSKLIDGRLAACNLACE 141
T+ E AAL+A ++ + GR N A E
Sbjct: 87 TFATSEEASAALQAMDNQELHGRTVRVNYAQE 118
>Medtr1g019150.1 | polyadenylate-binding protein | HC |
chr1:5708406-5713691 | 20130731
Length = 647
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 83/178 (46%), Gaps = 20/178 (11%)
Query: 65 KLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALRA 124
++V+ L+ + + + L F +G I ++ D A G+S+ +GF+ ++N E A+ A
Sbjct: 212 NVYVKNLSESFTEDDLKNEFGAYGTITSAVLMRD-ADGRSKCFGFVNFENAEDAAKAVEA 270
Query: 125 PS-KLID------GRLAACNLACEGLSG------PSSALDVSQ-RKLYIGSLSPEVTSEV 170
+ K +D G+ + + L G S +D Q LY+ +L +T E
Sbjct: 271 LNGKKVDDKEWYVGKAQKKSEREQELKGRFEQTVKESVVDKFQGLNLYLKNLDDSITDEK 330
Query: 171 LLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPEKTLGGRTIIVK 228
L F G I + D + VSRG GFV + T E A +A+ + + G+ I+ K
Sbjct: 331 LKEMFSEFGTITSYKIMRDPN-GVSRGSGFVAFSTPEEASRALGE----MNGKMIVSK 383
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 70/158 (44%), Gaps = 14/158 (8%)
Query: 62 VHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAA 121
V L+V L N + L F + G++ V D AT +S GYG++ + N + A
Sbjct: 30 VTTSLYVGDLEVNVNDSQLYDLFNQVGQVVSVRVCRDLATRRSLGYGYVNFTNPQDAARA 89
Query: 122 LRAPSKLIDGRLAACNLACEGLSGPSSALDVSQRK-----LYIGSLSPEVTSEVLLSFFG 176
L L + + + S D S RK ++I +L + + L F
Sbjct: 90 LDV--------LNFTPMNNKSIRVMYSHRDPSSRKSGTANIFIKNLDKTIDHKALHDTFS 141
Query: 177 RHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAID 214
G+I +A D + S+G+GFV ++ ++A+ AID
Sbjct: 142 SFGQIMSCKIATDG-SGQSKGYGFVQFEAEDSAQNAID 178
>Medtr7g107580.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:43890650-43885583 | 20130731
Length = 433
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 92/200 (46%), Gaps = 28/200 (14%)
Query: 49 IAEEIKSIASADPVHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYG 108
+AE + S + KLFV + + + + L F+E ++E +I DKAT SRG
Sbjct: 1 MAETKEESKSNNEESVKLFVGQVPKHMTEDELLTLFKEFAIVDEVNIIKDKATRASRGCC 60
Query: 109 FITYKNMESTQAALRAPSKLIDGRLAACNLACEGLSGPSSALDVS---------QRKLYI 159
F+ + + A+ AC+ + L G SS L V + KL+I
Sbjct: 61 FVICPSRDEADKAVN-----------ACHNK-KTLPGASSPLQVKYADGELERLEHKLFI 108
Query: 160 GSLSPEVTSEVLLS-FFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTE---AAKKAIDD 215
G L P+ SEV +S F ++G I++ + S+G F+ Y+T E AA +AI+
Sbjct: 109 GML-PKNISEVEVSALFSKYGTIKDLQI-LRGSQQTSKGCAFLKYETKEQALAALEAING 166
Query: 216 PEKTLGGRT-IIVKFAGAHK 234
K G ++VK+A K
Sbjct: 167 KHKMEGSSVPLVVKWADTEK 186
>Medtr1g061870.1 | polyadenylate-binding plant protein, putative |
HC | chr1:27029234-27025443 | 20130731
Length = 522
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 84/165 (50%), Gaps = 9/165 (5%)
Query: 66 LFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALRAP 125
+FV+ LA + + L FQ++G I + + GKS+G+G+I + + ES A++
Sbjct: 105 VFVKNLAASIDNVGLHDLFQKYGNILSSKIARSE-DGKSKGFGYIQFDSEESANVAIQKM 163
Query: 126 --SKLIDGRLAACNLACEG-LSGPSSALDVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIE 182
S + D ++ + S P LD LY+ +L P VT + L F G+I
Sbjct: 164 NGSTVRDKQIYVGKFIRKSERSLPD--LDAKFTNLYVKNLDPVVTEKHLGEKFSSFGKIV 221
Query: 183 EGSVAYDKDTN-VSRGFGFVTYKTTEAAKKAIDDPEKTLGGRTII 226
S+A KD N S+GFGFV Y + + A++A++ + + G I+
Sbjct: 222 --SLAIKKDENGQSKGFGFVNYDSPDDARRAMEAMDGSQFGSKIL 264
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 74/160 (46%), Gaps = 8/160 (5%)
Query: 66 LFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALRAP 125
L+V L + + L AF E + V D ATGKS YG++ N+ S Q A+RA
Sbjct: 17 LYVGDLHSDVTDAQLYKAFSEFNTLISARVCKDSATGKSLCYGYV---NLSSHQEAIRAI 73
Query: 126 SKLIDGRLAACNLACEGLSGPSSALDVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEGS 185
L + LS + A + +++ +L+ + + L F ++G I
Sbjct: 74 ELKNHSSLNGKVIRVMWLSRDADARKSGKGNVFVKNLAASIDNVGLHDLFQKYGNILSSK 133
Query: 186 VAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPEKTLGGRTI 225
+A +D S+GFG++ + + E+A AI + + G T+
Sbjct: 134 IARSEDGK-SKGFGYIQFDSEESANVAI----QKMNGSTV 168
>Medtr6g040070.1 | DEAD/DEAH-box helicase | HC |
chr6:14397151-14388452 | 20130731
Length = 784
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 76/171 (44%), Gaps = 16/171 (9%)
Query: 58 SADPVHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMES 117
+ P ++V+ L + E L F +G I AVI G S+ +GF+ +++ +S
Sbjct: 99 NGSPKFTNVYVKNLLETDTDEDLKKLFSTYGVIT-SAVIMKDENGNSKCFGFVNFQSPDS 157
Query: 118 TQAALRAPSKLI--DGRLAACNLA---CEGLSGPSSALDVSQRK---------LYIGSLS 163
AA+ + DG++ A CE + + + + K LY+ +L
Sbjct: 158 AAAAVEKLNGTTTNDGKVLYVGRAQRKCEREAELRAKFEQEKIKRYEKLQGANLYLKNLD 217
Query: 164 PEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAID 214
+ E L F G I V +D + S+GFGFV + T+E A KAI+
Sbjct: 218 ESINDEKLKEMFSEFGTITSCKVMFDAHGH-SKGFGFVAFSTSEEASKAIN 267
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 77/164 (46%), Gaps = 15/164 (9%)
Query: 60 DPVHRK-----LFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKN 114
DP RK +FV+ L + ++ L F G + V D + GKS GYGF+ Y N
Sbjct: 6 DPSIRKTGFANVFVKNLDTSIDNKVLHDTFATFGTVLSCKVALD-SNGKSLGYGFVQYDN 64
Query: 115 MESTQAALRAPSKLIDGRLAACNLACEG--LSGPSSALDVSQR--KLYIGSLSPEVTSEV 170
ES + A+ +DG L A G + + + S + +Y+ +L T E
Sbjct: 65 HESAKCAIEK----LDGMLIKDKKAFVGYFIRRQERSENGSPKFTNVYVKNLLETDTDED 120
Query: 171 LLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAID 214
L F +G I + D++ N S+ FGFV +++ ++A A++
Sbjct: 121 LKKLFSTYGVITSAVIMKDENGN-SKCFGFVNFQSPDSAAAAVE 163
>Medtr2g049640.2 | RNA recognition motif 2 in plant MEI2-like
protein | HC | chr2:21883965-21877390 | 20130731
Length = 865
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 80/164 (48%), Gaps = 14/164 (8%)
Query: 64 RKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALR 123
R LFVR + N L F+++G+I +Y K RG+ I+Y ++ + + A+R
Sbjct: 196 RTLFVRNINSNVEDTELRTLFEQYGDIR---TLY--TACKHRGFVMISYYDIRAARTAMR 250
Query: 124 A-PSKLIDGRLAACNLACEGLSGPSSALDVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIE 182
A +K + R + + PS D++Q L + +L P V++E L FG +GE++
Sbjct: 251 ALQNKPLRRRKLDIHFSIPK-DNPSDK-DINQGTLVVFNLDPSVSNEDLRQIFGAYGEVK 308
Query: 183 EGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPEKT-LGGRTI 225
E ++T R F+ Y AA+ A+ ++ + G+ I
Sbjct: 309 E-----IRETPHKRHHKFIEYYDVRAAEAALKSLNRSDIAGKRI 347
>Medtr2g049640.1 | RNA recognition motif 2 in plant MEI2-like
protein | HC | chr2:21883858-21877390 | 20130731
Length = 865
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 80/164 (48%), Gaps = 14/164 (8%)
Query: 64 RKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALR 123
R LFVR + N L F+++G+I +Y K RG+ I+Y ++ + + A+R
Sbjct: 196 RTLFVRNINSNVEDTELRTLFEQYGDIR---TLY--TACKHRGFVMISYYDIRAARTAMR 250
Query: 124 A-PSKLIDGRLAACNLACEGLSGPSSALDVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIE 182
A +K + R + + PS D++Q L + +L P V++E L FG +GE++
Sbjct: 251 ALQNKPLRRRKLDIHFSIPK-DNPSDK-DINQGTLVVFNLDPSVSNEDLRQIFGAYGEVK 308
Query: 183 EGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPEKT-LGGRTI 225
E ++T R F+ Y AA+ A+ ++ + G+ I
Sbjct: 309 E-----IRETPHKRHHKFIEYYDVRAAEAALKSLNRSDIAGKRI 347
>Medtr2g026180.4 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9464335-9461370 | 20130731
Length = 411
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 44/79 (55%)
Query: 152 VSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKK 211
+ +K+++G L+ VT ++F + G I + V YD +T RGFGF+TY + EA +K
Sbjct: 33 IRTKKIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEK 92
Query: 212 AIDDPEKTLGGRTIIVKFA 230
+ L G+ + VK A
Sbjct: 93 VLHKTFHELNGKMVEVKRA 111
>Medtr4g131970.1 | polyadenylate-binding protein RBP47C | HC |
chr4:55111286-55115662 | 20130731
Length = 411
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 75/168 (44%), Gaps = 6/168 (3%)
Query: 57 ASADPVHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNME 116
+SAD V + L++ L + L F GE+ VI +K T +S GYGF+ + +
Sbjct: 68 SSADEV-KTLWIGDLQYWMDENYLYNCFSHTGEVGSVKVIRNKQTNQSEGYGFLEFISRA 126
Query: 117 STQAALRAPSKLI---DGRLAACNLACEGLSGPSSALDVSQRKLYIGSLSPEVTSEVLLS 173
+ L+ + I G+ N A SG D +++G L+ +V+ L
Sbjct: 127 GAERVLQTFNGTIMPNGGQNFRLNWATFS-SGEKRHDDSPDYTIFVGDLAADVSDHHLTE 185
Query: 174 FF-GRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPEKTL 220
F R+ ++ V D+ T ++G+GFV + +A+ + + L
Sbjct: 186 VFRTRYNSVKGAKVVIDRTTGRTKGYGFVRFADESEQMRAMTEMQGVL 233
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 80/182 (43%), Gaps = 23/182 (12%)
Query: 66 LFVRGLAWNTSSETLCAAFQ-EHGEIEEGAVIYDKATGKSRGYGFITYKN-------MES 117
+FV LA + S L F+ + ++ V+ D+ TG+++GYGF+ + + M
Sbjct: 169 IFVGDLAADVSDHHLTEVFRTRYNSVKGAKVVIDRTTGRTKGYGFVRFADESEQMRAMTE 228
Query: 118 TQAALRAPSKLIDGRLAACNLACEG--------LSGPSSALDVSQRKLYIGSLSPEVTSE 169
Q L + + G + NL + G + D + +++G+L P VT E
Sbjct: 229 MQGVLCSTRPMRIGPASNKNLGTQTSKASYQNPQGGAQNENDPNNTTIFVGNLDPNVTDE 288
Query: 170 VLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPEKT-LGGRTIIVK 228
L F ++GE+ + K GFV + +A++A+ T LGG+ + +
Sbjct: 289 HLKQVFTQYGELVHVKIPSGKRC------GFVQFADRSSAEEALRVLNGTLLGGQNVRLS 342
Query: 229 FA 230
+
Sbjct: 343 WG 344
>Medtr3g101370.1 | polyadenylate-binding protein RBP47C | HC |
chr3:46662442-46658399 | 20130731
Length = 420
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 73/157 (46%), Gaps = 4/157 (2%)
Query: 63 HRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAAL 122
++ L+V L L F GEI VI +K T ++ GYGF+ + + + + L
Sbjct: 92 NKTLWVGDLHHWMDENYLHRCFASTGEIFSIKVIRNKQTCQTEGYGFVEFTSHGTAEKVL 151
Query: 123 RAPSKLIDGRLAA---CNLACEGLSGPSSALDVSQRKLYIGSLSPEVTSEVLL-SFFGRH 178
+ + ++ N A + +V +++G L+ +VT +LL +F ++
Sbjct: 152 QTYAGMLMPNTEQPFRLNWATFSTGDHKRSDNVPDLSIFVGDLAADVTDTMLLETFSDKY 211
Query: 179 GEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDD 215
++ V +D +T S+G+GFV + KA+++
Sbjct: 212 PSVKAAKVVFDANTGRSKGYGFVRFGDDGERSKALNE 248
>Medtr1g020080.1 | polyadenylate-binding protein RBP47C | HC |
chr1:6171590-6176327 | 20130731
Length = 425
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 74/176 (42%), Gaps = 22/176 (12%)
Query: 66 LFVRGLAWNTSSETLCAAFQE-HGEIEEGAVIYDKATGKSRGYGFITYKN-MESTQAALR 123
+FV LA + + L F + ++ V+YD TG+S+GYGF+ + + E +QA +
Sbjct: 192 IFVGDLAADVTDSVLHETFSSSYPSVKAAKVVYDANTGRSKGYGFVRFGDESERSQAMTQ 251
Query: 124 APSKLIDGRLAACNLAC-------------EGLSGPSSALDVSQRKLYIGSLSPEVTSEV 170
R A G S S A D + +++G L VT E
Sbjct: 252 MNGVYCSSRPMRIGAATPRKSSGHQPGGQSNGTSSQSEA-DSTNTTIFVGGLDSNVTDED 310
Query: 171 LLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPEKTLGGRTII 226
L F ++GEI + V +G GFV + A++A+ T+ G+ +
Sbjct: 311 LKQTFSQYGEIASVKIP------VGKGCGFVQFANRNNAEEALQKLNGTMIGKQTV 360
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 3/154 (1%)
Query: 63 HRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAAL 122
++ L++ L L F GEI VI +K +G S GYGF + + + + L
Sbjct: 96 NKTLWIGDLHSWMDESYLHRCFASTGEITSVKVIRNKHSGISEGYGFAEFFSHATAEKVL 155
Query: 123 RAPSK-LIDGRLAACNLACEGLS-GPSSALDVSQRKLYIGSLSPEVTSEVLL-SFFGRHG 179
+ + L+ A L S G + +V+ +++G L+ +VT VL +F +
Sbjct: 156 QNYAGILMPNADQAFRLNWATFSTGDKGSDNVTDLSIFVGDLAADVTDSVLHETFSSSYP 215
Query: 180 EIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAI 213
++ V YD +T S+G+GFV + +A+
Sbjct: 216 SVKAAKVVYDANTGRSKGYGFVRFGDESERSQAM 249
>Medtr3g101370.2 | polyadenylate-binding protein RBP47C | HC |
chr3:46662442-46658399 | 20130731
Length = 300
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 73/159 (45%), Gaps = 10/159 (6%)
Query: 64 RKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFI------TYKNMES 117
+ L+V L L F GEI VI +K T ++ GYGF+ T + +
Sbjct: 93 KTLWVGDLHHWMDENYLHRCFASTGEIFSIKVIRNKQTCQTEGYGFVEFTSHGTAEKVLQ 152
Query: 118 TQAALRAPSKLIDGRLAACNLACEGLSGPSSALDVSQRKLYIGSLSPEVTSEVLL-SFFG 176
T A + P+ RL N A + +V +++G L+ +VT +LL +F
Sbjct: 153 TYAGMLMPNTEQPFRL---NWATFSTGDHKRSDNVPDLSIFVGDLAADVTDTMLLETFSD 209
Query: 177 RHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDD 215
++ ++ V +D +T S+G+GFV + KA+++
Sbjct: 210 KYPSVKAAKVVFDANTGRSKGYGFVRFGDDGERSKALNE 248
>Medtr4g036415.1 | splicing factor-like protein | HC |
chr4:13104578-13109685 | 20130731
Length = 767
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 78/285 (27%), Positives = 115/285 (40%), Gaps = 26/285 (9%)
Query: 20 VEDLRLLIEPLAKPQLVDLLAKLGSQYPSIAEEIKSIASADPVHRKLFVRGLAWNTSSET 79
VE L ++ + L +L + +I +E +P HR+ SE
Sbjct: 301 VEKLLQPVDEVLNEHKRQQLRELAALNGTIRDEEYCRLCGEPGHRQYACPTRTSTFKSEV 360
Query: 80 LCAAFQEHGEIEEGAVIYDKATGKSRG---YGFITYKNMESTQAALRAPSKLIDGRLAA- 135
+C + G + ATGK F+ ++A++ S L G ++
Sbjct: 361 VCKHCGDGGHPSIDCPV-KGATGKKMDDEYQNFLAELGGTVPESAIKTTSTLAIGSGSSG 419
Query: 136 -----CNLACEGLSGPSSAL-------DVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEE 183
N + G S P + L ++ LYIG L P + + L+ F + GEI
Sbjct: 420 SNPPWANNSGSGGSTPQAGLGAGAVKKEIDDTNLYIGYLPPTLEDDGLIQLFQQFGEIVM 479
Query: 184 GSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPEK-TLGGRTIIVKFAGAHKGKTGQPPF 242
V D+ T +S+G+GFV Y A AI L GRTI V+ AG P
Sbjct: 480 AKVIKDRITGLSKGYGFVKYADITMANNAIVAMNGYRLEGRTIAVRVAGKPPQPVVPPGP 539
Query: 243 PAGVPMAALPMTPGYVQSGKPHISSAPSVGYTYPQPVAPYPLASY 287
PA +A+P P VQS +P I + PS YT P+ P SY
Sbjct: 540 PA----SAVPTYP--VQS-QP-IGAYPSQQYTGGGPIGNAPPGSY 576
>Medtr6g040190.1 | polyadenylate-binding protein | LC |
chr6:14408733-14404765 | 20130731
Length = 623
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 82/183 (44%), Gaps = 28/183 (15%)
Query: 60 DPVHRK-----LFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKN 114
DP+ RK LF++ L + ++ L F G + V D + G S+G+GF+ + N
Sbjct: 104 DPLIRKTGFANLFIKNLETSIDNKALHETFSVFGNVLSCKVAMD-SNGHSKGHGFVQFDN 162
Query: 115 MESTQAALRAPSKLIDGRLAACN-------LACEGLSGPSSALDVSQRKLYIGSLSPEVT 167
+S + A+ +DG L + C+ S P +Y+ +LS T
Sbjct: 163 DQSAKNAIEK----LDGMLMNDKKVYVGYFVRCQERSSPKFT------NVYVKNLSESYT 212
Query: 168 SEVLLSFFGRHGEIEEGSVAYDK-DTNVSRGFGFVTYKTTEAAKKAID--DPEKTLGGRT 224
E L F G I SV K D S+ FGFV ++++++A A++ + T G+
Sbjct: 213 YEDLKQLFNSFGVIT--SVLIMKYDNGNSKCFGFVNFQSSDSAATAVEKLNGSTTNDGKV 270
Query: 225 IIV 227
+ V
Sbjct: 271 LFV 273
>Medtr7g099940.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:40168782-40171275 | 20130731
Length = 141
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Query: 44 SQYPSIAEEIKSIASADPVHR-KLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATG 102
SQ P ++ SI + KLF+ GL+ T+ E L AF G++ E VI D+ +G
Sbjct: 14 SQSPLVSSHFTSIRLNSTLTSPKLFISGLSRLTTDEKLTEAFSPFGQLLEAKVITDRGSG 73
Query: 103 KSRGYGFITYKNMESTQAALRA-PSKLIDG 131
+S+G+ F++Y +E + A +K +DG
Sbjct: 74 RSKGFAFVSYSTIEEAEKAREGMNAKFLDG 103
>Medtr4g081520.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:31628430-31625444 | 20130731
Length = 144
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
Query: 65 KLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALRA 124
LFV GL+ T++ETL AFQ+ GE+ V+ D+ +G S+G+GF+ Y +E +
Sbjct: 52 NLFVSGLSKRTTTETLREAFQKFGEVVHARVVTDRVSGYSKGFGFVKYATLEDAAKGIEG 111
Query: 125 PSKLIDGRL 133
+DG+
Sbjct: 112 ----MDGKF 116
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 7/92 (7%)
Query: 156 KLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDD 215
L++ LS T+E L F + GE+ V D+ + S+GFGFV Y T E A K I+
Sbjct: 52 NLFVSGLSKRTTTETLREAFQKFGEVVHARVVTDRVSGYSKGFGFVKYATLEDAAKGIEG 111
Query: 216 PE-KTLGGRTIIVKFA------GAHKGKTGQP 240
+ K L G I ++A G TG+P
Sbjct: 112 MDGKFLEGWVIFAEYARPRPPPGEAVNNTGRP 143
>Medtr3g029580.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:9308768-9310458 | 20130731
Length = 134
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 47/70 (67%), Gaps = 1/70 (1%)
Query: 65 KLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITY-KNMESTQAALR 123
K+FV+GLA++T+ E L AF ++G + + ++ +KA + +G+G++T+ + E+ +A +
Sbjct: 33 KIFVKGLAFSTTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEEARKAQIG 92
Query: 124 APSKLIDGRL 133
K++ GR+
Sbjct: 93 MNGKILHGRV 102
>Medtr6g477870.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr6:28646362-28643393 | 20130731
Length = 183
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 156 KLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDD 215
+LY+ LS T E L + F G++ + ++ DK N RGF F+ Y T E +KKAI+
Sbjct: 96 RLYVSGLSFRTTEESLRNAFKNFGQLVDVNLVMDKVANRPRGFAFLRYATEEESKKAIEG 155
Query: 216 PE-KTLGGRTIIVKFA 230
K L GR I V+ A
Sbjct: 156 MHGKFLDGRVIFVEVA 171
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 65 KLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAALRA 124
+L+V GL++ T+ E+L AF+ G++ + ++ DK + RG+ F+ Y E ++ A+
Sbjct: 96 RLYVSGLSFRTTEESLRNAFKNFGQLVDVNLVMDKVANRPRGFAFLRYATEEESKKAIEG 155
Query: 125 PS-KLIDGRLAACNLA 139
K +DGR+ +A
Sbjct: 156 MHGKFLDGRVIFVEVA 171
>Medtr1g097440.2 | polyadenylate-binding protein | HC |
chr1:43966152-43970565 | 20130731
Length = 646
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 72/161 (44%), Gaps = 8/161 (4%)
Query: 60 DPVHRK-----LFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKN 114
DP RK +F++ L + + L F G + V D G+S+GYGF+ + N
Sbjct: 109 DPSVRKSGSGNVFIKNLDTSIDHKALHDTFAAFGPVLSCKVALD-GNGQSKGYGFVQFDN 167
Query: 115 MESTQAALRA-PSKLIDGRLAACNLACEGLSGPSSALDVSQRKLYIGSLSPEVTSEVLLS 173
E+ ++A++ LI+ + + +Y+ ++S T E L
Sbjct: 168 EEAAKSAIKQLDGMLINDKQVYVGFFVRHQERARTNGSPKFTNVYVKNISEASTDEDLKQ 227
Query: 174 FFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAID 214
FG G I +V D + SR FGFV +++ ++A A++
Sbjct: 228 LFGPFGMITSATVMKDANGK-SRCFGFVNFQSPDSAAAAVE 267
>Medtr1g097440.1 | polyadenylate-binding protein | HC |
chr1:43966161-43970565 | 20130731
Length = 646
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 72/161 (44%), Gaps = 8/161 (4%)
Query: 60 DPVHRK-----LFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKN 114
DP RK +F++ L + + L F G + V D G+S+GYGF+ + N
Sbjct: 109 DPSVRKSGSGNVFIKNLDTSIDHKALHDTFAAFGPVLSCKVALD-GNGQSKGYGFVQFDN 167
Query: 115 MESTQAALRA-PSKLIDGRLAACNLACEGLSGPSSALDVSQRKLYIGSLSPEVTSEVLLS 173
E+ ++A++ LI+ + + +Y+ ++S T E L
Sbjct: 168 EEAAKSAIKQLDGMLINDKQVYVGFFVRHQERARTNGSPKFTNVYVKNISEASTDEDLKQ 227
Query: 174 FFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAID 214
FG G I +V D + SR FGFV +++ ++A A++
Sbjct: 228 LFGPFGMITSATVMKDANGK-SRCFGFVNFQSPDSAAAAVE 267
>Medtr4g086600.1 | polyadenylate-binding protein RBP47B | HC |
chr4:33938062-33942519 | 20130731
Length = 454
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 74/172 (43%), Gaps = 20/172 (11%)
Query: 51 EEIKSIASADPVHRKLFVRGLAWNTSSET-LCAAFQEHGEIEEGAVIYDKATGKSRGYGF 109
EEI++I D H W ET L F GE+ VI +K TG+S GYGF
Sbjct: 113 EEIRTIWLGDLHH---------W--MDETFLHNCFAHTGEVASAKVIRNKQTGQSEGYGF 161
Query: 110 ITYKNMESTQAALR------APSKLIDGRLAACNLACEGLSGP-SSALDVSQRKLYIGSL 162
+ + + L+ P+ RL + G G S+ S +++G L
Sbjct: 162 VEFYTRAMAEKVLQNFNGTMMPNTDQAFRLNWATFSAAGGGGERRSSEATSDLSVFVGDL 221
Query: 163 SPEVTSEVLL-SFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAI 213
+ +VT +L +F + I+ V D +T S+G+GFV + +A+
Sbjct: 222 AIDVTDAMLQETFASKFSSIKGAKVVIDSNTGRSKGYGFVRFGDESERTRAM 273
>Medtr1g020080.2 | polyadenylate-binding protein RBP47C | HC |
chr1:6171590-6176186 | 20130731
Length = 309
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 67/144 (46%), Gaps = 3/144 (2%)
Query: 63 HRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAAL 122
++ L++ L L F GEI VI +K +G S GYGF + + + + L
Sbjct: 96 NKTLWIGDLHSWMDESYLHRCFASTGEITSVKVIRNKHSGISEGYGFAEFFSHATAEKVL 155
Query: 123 RA-PSKLIDGRLAACNLACEGLS-GPSSALDVSQRKLYIGSLSPEVTSEVLL-SFFGRHG 179
+ L+ A L S G + +V+ +++G L+ +VT VL +F +
Sbjct: 156 QNYAGILMPNADQAFRLNWATFSTGDKGSDNVTDLSIFVGDLAADVTDSVLHETFSSSYP 215
Query: 180 EIEEGSVAYDKDTNVSRGFGFVTY 203
++ V YD +T S+G+GFV +
Sbjct: 216 SVKAAKVVYDANTGRSKGYGFVRF 239
>Medtr7g118120.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025533-49031900 | 20130731
Length = 479
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 79/180 (43%), Gaps = 22/180 (12%)
Query: 32 KPQLVDLLAKLGSQYPSIAEEIKSIASADPVHRKLFVRGLAWNTSSETLCAAFQEHGEIE 91
KP L+D + E+ + S P ++F+ GL +TS + + + G+I
Sbjct: 81 KPALIDEEER---------EKHDELLSRPPHGSEVFIGGLPRDTSDDDVRELCEPMGDIV 131
Query: 92 EGAVIYDKATGKSRGYGFITYKNMESTQAALRAPSKLIDGRLAACNLACEGLSGPSSALD 151
E +I D+ TG+S+GY F+ YK E Q A+ + + L C L
Sbjct: 132 EIKLIKDRETGESKGYAFVGYKTKEVAQKAI---DDIHNKEFKGKTLRC--------LLS 180
Query: 152 VSQRKLYIGSLSPEVT-SEVLLSFFGRHGEIEEGSVAYD-KDTNVSRGFGFVTYKTTEAA 209
++ +L+IG++ T E + G +E + D ++ + +RGF FV Y A
Sbjct: 181 ETKHRLFIGNIPKTWTEDEFRKAVEGVGPGVESIDLIKDPQNQSRNRGFAFVLYYNNACA 240
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 69/271 (25%), Positives = 112/271 (41%), Gaps = 33/271 (12%)
Query: 18 TSVEDLRLLIEPLAKPQLVDLLAKLGSQ----YPSIAEEIKSIA--SADPVHRKLF---- 67
TS +D+R L EP+ + L+ + Y + + K +A + D +H K F
Sbjct: 115 TSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAIDDIHNKEFKGKT 174
Query: 68 VRGLAWNTSSETLCA---------AFQEHGE-----IEEGAVIYD-KATGKSRGYGFITY 112
+R L T F++ E +E +I D + ++RG+ F+ Y
Sbjct: 175 LRCLLSETKHRLFIGNIPKTWTEDEFRKAVEGVGPGVESIDLIKDPQNQSRNRGFAFVLY 234
Query: 113 KNMESTQAALRAPSKL---IDGRLAACNLACEGLSGPSSALDVSQRKLYIGSLSPEVTSE 169
N + + S + +DG A S SA + LY+ ++ VT+E
Sbjct: 235 YNNACADFSRQKMSSVGFKLDGITPTVTWADPKTSPDQSAAASQVKALYVKNIPENVTTE 294
Query: 170 VLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPEK-TLGGRTIIVK 228
L F RHGE+ + + K + R FGF+ Y +A KA+ + EK + G+ + V
Sbjct: 295 QLKELFRRHGEVTKVVMPPGKASG-KRDFGFIHYAERSSALKAVKETEKYEIDGQALEVV 353
Query: 229 FAG--AHKGKTGQPPFPAGVPMAALPMTPGY 257
A A K G + G+ LP PGY
Sbjct: 354 IAKPQAEKKPDGGYAYNPGLHPNHLPH-PGY 383
>Medtr7g118120.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025533-49031887 | 20130731
Length = 479
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 79/180 (43%), Gaps = 22/180 (12%)
Query: 32 KPQLVDLLAKLGSQYPSIAEEIKSIASADPVHRKLFVRGLAWNTSSETLCAAFQEHGEIE 91
KP L+D + E+ + S P ++F+ GL +TS + + + G+I
Sbjct: 81 KPALIDEEER---------EKHDELLSRPPHGSEVFIGGLPRDTSDDDVRELCEPMGDIV 131
Query: 92 EGAVIYDKATGKSRGYGFITYKNMESTQAALRAPSKLIDGRLAACNLACEGLSGPSSALD 151
E +I D+ TG+S+GY F+ YK E Q A+ + + L C L
Sbjct: 132 EIKLIKDRETGESKGYAFVGYKTKEVAQKAI---DDIHNKEFKGKTLRC--------LLS 180
Query: 152 VSQRKLYIGSLSPEVT-SEVLLSFFGRHGEIEEGSVAYD-KDTNVSRGFGFVTYKTTEAA 209
++ +L+IG++ T E + G +E + D ++ + +RGF FV Y A
Sbjct: 181 ETKHRLFIGNIPKTWTEDEFRKAVEGVGPGVESIDLIKDPQNQSRNRGFAFVLYYNNACA 240
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 69/271 (25%), Positives = 112/271 (41%), Gaps = 33/271 (12%)
Query: 18 TSVEDLRLLIEPLAKPQLVDLLAKLGSQ----YPSIAEEIKSIA--SADPVHRKLF---- 67
TS +D+R L EP+ + L+ + Y + + K +A + D +H K F
Sbjct: 115 TSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAIDDIHNKEFKGKT 174
Query: 68 VRGLAWNTSSETLCA---------AFQEHGE-----IEEGAVIYD-KATGKSRGYGFITY 112
+R L T F++ E +E +I D + ++RG+ F+ Y
Sbjct: 175 LRCLLSETKHRLFIGNIPKTWTEDEFRKAVEGVGPGVESIDLIKDPQNQSRNRGFAFVLY 234
Query: 113 KNMESTQAALRAPSKL---IDGRLAACNLACEGLSGPSSALDVSQRKLYIGSLSPEVTSE 169
N + + S + +DG A S SA + LY+ ++ VT+E
Sbjct: 235 YNNACADFSRQKMSSVGFKLDGITPTVTWADPKTSPDQSAAASQVKALYVKNIPENVTTE 294
Query: 170 VLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPEK-TLGGRTIIVK 228
L F RHGE+ + + K + R FGF+ Y +A KA+ + EK + G+ + V
Sbjct: 295 QLKELFRRHGEVTKVVMPPGKASG-KRDFGFIHYAERSSALKAVKETEKYEIDGQALEVV 353
Query: 229 FAG--AHKGKTGQPPFPAGVPMAALPMTPGY 257
A A K G + G+ LP PGY
Sbjct: 354 IAKPQAEKKPDGGYAYNPGLHPNHLPH-PGY 383
>Medtr7g118120.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025861-49031887 | 20130731
Length = 479
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 79/180 (43%), Gaps = 22/180 (12%)
Query: 32 KPQLVDLLAKLGSQYPSIAEEIKSIASADPVHRKLFVRGLAWNTSSETLCAAFQEHGEIE 91
KP L+D + E+ + S P ++F+ GL +TS + + + G+I
Sbjct: 81 KPALIDEEER---------EKHDELLSRPPHGSEVFIGGLPRDTSDDDVRELCEPMGDIV 131
Query: 92 EGAVIYDKATGKSRGYGFITYKNMESTQAALRAPSKLIDGRLAACNLACEGLSGPSSALD 151
E +I D+ TG+S+GY F+ YK E Q A+ + + L C L
Sbjct: 132 EIKLIKDRETGESKGYAFVGYKTKEVAQKAI---DDIHNKEFKGKTLRC--------LLS 180
Query: 152 VSQRKLYIGSLSPEVT-SEVLLSFFGRHGEIEEGSVAYD-KDTNVSRGFGFVTYKTTEAA 209
++ +L+IG++ T E + G +E + D ++ + +RGF FV Y A
Sbjct: 181 ETKHRLFIGNIPKTWTEDEFRKAVEGVGPGVESIDLIKDPQNQSRNRGFAFVLYYNNACA 240
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 69/271 (25%), Positives = 112/271 (41%), Gaps = 33/271 (12%)
Query: 18 TSVEDLRLLIEPLAKPQLVDLLAKLGSQ----YPSIAEEIKSIA--SADPVHRKLF---- 67
TS +D+R L EP+ + L+ + Y + + K +A + D +H K F
Sbjct: 115 TSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAIDDIHNKEFKGKT 174
Query: 68 VRGLAWNTSSETLCA---------AFQEHGE-----IEEGAVIYD-KATGKSRGYGFITY 112
+R L T F++ E +E +I D + ++RG+ F+ Y
Sbjct: 175 LRCLLSETKHRLFIGNIPKTWTEDEFRKAVEGVGPGVESIDLIKDPQNQSRNRGFAFVLY 234
Query: 113 KNMESTQAALRAPSKL---IDGRLAACNLACEGLSGPSSALDVSQRKLYIGSLSPEVTSE 169
N + + S + +DG A S SA + LY+ ++ VT+E
Sbjct: 235 YNNACADFSRQKMSSVGFKLDGITPTVTWADPKTSPDQSAAASQVKALYVKNIPENVTTE 294
Query: 170 VLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPEK-TLGGRTIIVK 228
L F RHGE+ + + K + R FGF+ Y +A KA+ + EK + G+ + V
Sbjct: 295 QLKELFRRHGEVTKVVMPPGKASG-KRDFGFIHYAERSSALKAVKETEKYEIDGQALEVV 353
Query: 229 FAG--AHKGKTGQPPFPAGVPMAALPMTPGY 257
A A K G + G+ LP PGY
Sbjct: 354 IAKPQAEKKPDGGYAYNPGLHPNHLPH-PGY 383
>Medtr7g094660.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:37745112-37734961 | 20130731
Length = 865
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 87/192 (45%), Gaps = 20/192 (10%)
Query: 55 SIASADPVH---RKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKA-----TGK--S 104
S A DP R LFV+ L + T+ E L F EH ++EG ++ K GK S
Sbjct: 629 SDADIDPDRIEARSLFVKNLNFKTTDEVLREHFSEH--MKEGRILSVKVKKHLKNGKNVS 686
Query: 105 RGYGFITYKNMES-TQAALRAPSKLIDGR---LAACNLACEGLSGPSSA-LDVSQRKLYI 159
G+GF+ + + E+ T ++DG L C++ + D S KL +
Sbjct: 687 MGFGFVEFDSTETATSVCNDLQGTVLDGHALILQLCHVKNDDDKVQKKVEKDKSSTKLLV 746
Query: 160 GSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPEKT 219
+++ E T + L F G+I+ S+ RGF FV Y T + A+ A+ T
Sbjct: 747 KNVAFEATEKDLRQLFSPFGQIK--SLRLPMKFGNHRGFAFVEYVTQQEAQNALTALSST 804
Query: 220 -LGGRTIIVKFA 230
L GR ++++ A
Sbjct: 805 HLYGRHLVIERA 816
>Medtr5g044970.1 | peptidyl-prolyl cis-trans isomerase E-like
protein | HC | chr5:19719748-19722666 | 20130731
Length = 170
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 152 VSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKK 211
V + LY+G L+ EV +L + F G+I++ D+ T R FGFVT+ E A
Sbjct: 7 VQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEREDASA 66
Query: 212 AIDDPE-KTLGGRTIIVKFAGAHKGKTGQPPFPA 244
A+D+ + L GR + V +A K K G+ + A
Sbjct: 67 AMDNMDGAELYGRVLTVNYALPEKIKGGEQGWAA 100
>Medtr3g014000.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:3865418-3863915 | 20130731
Length = 138
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 56/107 (52%), Gaps = 18/107 (16%)
Query: 48 SIAEEIKSIASADPVHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGY 107
S+ + +S++SA+ LF+ G+++NT L F +G++ + +I D+ TG+ RG+
Sbjct: 23 SVFQATRSMSSAN-----LFLGGISYNT----LRKHFSLYGKVLDAKIIRDRETGRPRGF 73
Query: 108 GFITYKNMESTQAALRAPSKLID--------GRLAACNLACEGLSGP 146
GF+T+ E AAL+ S I GR N A E SGP
Sbjct: 74 GFVTFATTEEASAALQTMSLAIKSMKNQDLYGRKVRVNYATEK-SGP 119
>Medtr1g115375.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:52075123-52071412 | 20130731
Length = 490
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 82/174 (47%), Gaps = 10/174 (5%)
Query: 62 VHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAA 121
V K++V G+ + +S + + + F+ G I E + TGK RG I++K T+AA
Sbjct: 218 VATKVYVGGIPYYSSEDDIHSYFEGCGTITEINCMTFPDTGKFRGIAIISFK----TEAA 273
Query: 122 LRAPSKLIDGRLAACNLA---CEGLSGPSSALDVSQ--RKLYIGSLSPEVTSEVLLSFFG 176
+ L + L C+ ++ + ++Y+GSLS E+T E L FF
Sbjct: 274 AKRALALDGADMGGLFLKIQPCKATQATRFTPEMKEGYNRIYVGSLSWEITEEELRKFFS 333
Query: 177 RHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDDPEKTLGGRTIIVKFA 230
+ ++ + DK+T RG+ V + +++ K A+ + L GR + + A
Sbjct: 334 -NCNVKAIRLGMDKETGEFRGYAHVDFGDSQSLKTALALDQSVLFGRPVRISCA 386
>Medtr4g081510.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:31623161-31620622 | 20130731
Length = 185
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 48/79 (60%), Gaps = 5/79 (6%)
Query: 55 SIASADPVHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKN 114
++ +A+P + +FV GL T+SETL AF++ GE+++ V+ D+ +G S+G+G++ Y
Sbjct: 36 ALKTAEP-NEIVFVTGLNKRTTSETLREAFKKFGEVKQVRVVADRVSGYSKGFGYVRYAT 94
Query: 115 MESTQAALRAPSKLIDGRL 133
E ++ +DG+
Sbjct: 95 SEDAAKGIQG----MDGKF 109
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 50/90 (55%), Gaps = 3/90 (3%)
Query: 144 SGPSSALDVSQ--RKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFV 201
SG +SAL ++ +++ L+ TSE L F + GE+++ V D+ + S+GFG+V
Sbjct: 31 SGVTSALKTAEPNEIVFVTGLNKRTTSETLREAFKKFGEVKQVRVVADRVSGYSKGFGYV 90
Query: 202 TYKTTEAAKKAIDDPE-KTLGGRTIIVKFA 230
Y T+E A K I + K L G + ++A
Sbjct: 91 RYATSEDAAKGIQGMDGKFLEGWIVFAEYA 120
>Medtr4g094235.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:37499515-37504601 | 20130731
Length = 280
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Query: 142 GLSGPSSALDVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFV 201
G SGP D L + +++ T++ L F ++G++ + + D+ T SRGF FV
Sbjct: 5 GRSGPPDISDTYS--LLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFV 62
Query: 202 TYKTTEAAKKAIDDPE-KTLGGRTIIVKFA 230
YK + A KA+D + + + GR I V+FA
Sbjct: 63 RYKYADEASKAVDRLDGRMVDGREITVQFA 92
>Medtr4g094235.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:37499504-37504601 | 20130731
Length = 280
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Query: 142 GLSGPSSALDVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFV 201
G SGP D L + +++ T++ L F ++G++ + + D+ T SRGF FV
Sbjct: 5 GRSGPPDISDTYS--LLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFV 62
Query: 202 TYKTTEAAKKAIDDPE-KTLGGRTIIVKFA 230
YK + A KA+D + + + GR I V+FA
Sbjct: 63 RYKYADEASKAVDRLDGRMVDGREITVQFA 92
>Medtr4g094235.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:37499531-37504526 | 20130731
Length = 281
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Query: 142 GLSGPSSALDVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFV 201
G SGP D L + +++ T++ L F ++G++ + + D+ T SRGF FV
Sbjct: 5 GRSGPPDISDTYS--LLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFV 62
Query: 202 TYKTTEAAKKAIDDPE-KTLGGRTIIVKFA 230
YK + A KA+D + + + GR I V+FA
Sbjct: 63 RYKYADEASKAVDRLDGRMVDGREITVQFA 92
>Medtr4g094235.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:37499531-37504601 | 20130731
Length = 281
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Query: 142 GLSGPSSALDVSQRKLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFV 201
G SGP D L + +++ T++ L F ++G++ + + D+ T SRGF FV
Sbjct: 5 GRSGPPDISDTYS--LLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFV 62
Query: 202 TYKTTEAAKKAIDDPE-KTLGGRTIIVKFA 230
YK + A KA+D + + + GR I V+FA
Sbjct: 63 RYKYADEASKAVDRLDGRMVDGREITVQFA 92
>Medtr3g029580.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:9308768-9310458 | 20130731
Length = 137
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 38/57 (66%)
Query: 65 KLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQAA 121
K+FV+GLA++T+ E L AF ++G + + ++ +KA + +G+G++T+ E + A
Sbjct: 33 KIFVKGLAFSTTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEEARKA 89
>Medtr4g052940.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 504
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 156 KLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDD 215
++Y+G + + SE L F R GE+ + + KD + ++GF FVTY+ E A KAI++
Sbjct: 111 EVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASKAIEE 170
Query: 216 PEKT-LGGRTI 225
T GR I
Sbjct: 171 LNNTEFKGRKI 181
>Medtr4g052940.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 504
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 156 KLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDD 215
++Y+G + + SE L F R GE+ + + KD + ++GF FVTY+ E A KAI++
Sbjct: 111 EVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASKAIEE 170
Query: 216 PEKT-LGGRTI 225
T GR I
Sbjct: 171 LNNTEFKGRKI 181
>Medtr4g052940.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 504
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 156 KLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDD 215
++Y+G + + SE L F R GE+ + + KD + ++GF FVTY+ E A KAI++
Sbjct: 111 EVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASKAIEE 170
Query: 216 PEKT-LGGRTI 225
T GR I
Sbjct: 171 LNNTEFKGRKI 181
>Medtr4g052940.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 354
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 156 KLYIGSLSPEVTSEVLLSFFGRHGEIEEGSVAYDKDTNVSRGFGFVTYKTTEAAKKAIDD 215
++Y+G + + SE L F R GE+ + + KD + ++GF FVTY+ E A KAI++
Sbjct: 111 EVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASKAIEE 170
Query: 216 PEKT-LGGRTI 225
T GR I
Sbjct: 171 LNNTEFKGRKI 181