Miyakogusa Predicted Gene

Lj1g3v4317460.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4317460.1 tr|B9ICJ5|B9ICJ5_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_575564 PE=4
SV=1,37.5,2e-16,Mitochondrial termination factor repeats,Mitochodrial
transcription termination factor-related; seg,,CUFF.32245.1
         (579 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g093000.1 | transcription termination factor family protei...   734   0.0  
Medtr5g084810.1 | transcription termination factor family protei...   311   1e-84
Medtr7g080620.1 | transcription termination factor family protei...   174   2e-43
Medtr8g005155.1 | transcription termination factor family protei...   169   6e-42
Medtr2g437060.1 | mTERF protein | LC | chr2:14494126-14497351 | ...    52   1e-06

>Medtr7g093000.1 | transcription termination factor family protein |
           HC | chr7:36920060-36916504 | 20130731
          Length = 571

 Score =  734 bits (1895), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/590 (63%), Positives = 466/590 (78%), Gaps = 31/590 (5%)

Query: 1   MIDLRKLRSTFPFANFTQNHLIHKPPQNPRFHST-KKPIQSKVKP--FPKSIVKEAQAAL 57
           MIDLRKLR TF F N T      KP  NPRF++T KKPIQ   KP    K  +KEAQAAL
Sbjct: 1   MIDLRKLRLTFTFFNLTN----LKPSLNPRFYNTAKKPIQLNSKPKILSKLTIKEAQAAL 56

Query: 58  LEYLHSTRSLQFSDADNMCKNSPFFLQDLLKKTQIHNKHKXXXXXXXXXXXXXXKHSISR 117
           LEYLHSTRSLQF DADNMCKNSPFFLQ+L+ KT + N++               K  ISR
Sbjct: 57  LEYLHSTRSLQFLDADNMCKNSPFFLQNLVHKT-LKNENSINT-----------KRLISR 104

Query: 118 YLRYHPINEFEPFFESVGLKPSEYASLLPRDMMFLNDDALLMENYQTLCNFGVQRTKVGR 177
           +LRY+PINEFEPFFES+GLKPSEY SLLPRD++FLNDD LLM NY TLCN+GV R+K+G+
Sbjct: 105 HLRYNPINEFEPFFESLGLKPSEYESLLPRDLIFLNDDPLLMANYHTLCNYGVPRSKMGK 164

Query: 178 IFKRAPEVFRYESGVLSLKLKAYEELGVAASTLVDAVAASPSLLVGDVDLDFVKVVEKLK 237
           IFK+AP+VF++E+GVL  K+KAYE+LG++AS LV+AVA SP +LVGDV+++FVKVVE LK
Sbjct: 165 IFKQAPQVFKFENGVLVSKIKAYEDLGISASILVNAVAVSPGILVGDVNVEFVKVVEMLK 224

Query: 238 EHFVAKGG------GWVEEHFLDGGVYCNWGMVLRLLCLLSEVGFSEGQIDELIRDRPCV 291
            + VAKGG      GW++ H+LD  V CNWG++L LLCLLS+ GFSE Q+ E+I   PC+
Sbjct: 225 -NIVAKGGDGDFDSGWIQWHYLDE-VSCNWGLMLELLCLLSDTGFSEKQLAEIIHRSPCI 282

Query: 292 VFQESGGRALSLIAFLSKFGLAVDRIALMFLEFPQIRIDKFYTNLRRCLQFLTEIEMQGE 351
           VF+ESGG+ LS+I FL KFGL+V++IAL+FLEFPQI + KF+ NLR CLQ LTEIEM+ +
Sbjct: 283 VFEESGGKTLSMIGFLVKFGLSVNQIALLFLEFPQILMVKFFANLRVCLQLLTEIEMEAK 342

Query: 352 EIGSIFQSHTLLLGSFTMKKTKSLLVDMNVGRKRLCRMVQDNPQEMKNWAMGIRVQPMVS 411
           EIG IFQSHT+L GS T+K TKSLL  +NVG++RLC ++QDNP EMKNW +GIRV+PMV 
Sbjct: 343 EIGKIFQSHTILAGSNTLKTTKSLLGCLNVGKRRLCSILQDNPHEMKNWVLGIRVKPMVG 402

Query: 412 VK--AEQQTMLRKTEFLVRWGFVENENSENLKEAFKLFRGRGTELQERFDLIVNAGVDSE 469
           ++   E+++ + KTEFL+R G+V  EN++ +  AFK FRG+G ELQERFD IVNAG+  +
Sbjct: 403 LRDLEEEKSRVGKTEFLLRLGYV--ENTKEMDSAFKAFRGKGAELQERFDFIVNAGLTRD 460

Query: 470 DVRKMLRVSPQIINQSIDRIKMKMEYLVKEGYSISDLVTFPSFLSYTPSRVKLRLSMNNW 529
           +VR+M+RVSPQI+NQ+ DR+KMK+EYLVK+G+S+SDLV FPS+LSY   RVKLRLSM NW
Sbjct: 461 EVRRMIRVSPQILNQNTDRVKMKIEYLVKKGFSVSDLVNFPSYLSYKSPRVKLRLSMYNW 520

Query: 530 LKDQGVADAGLALSTTIACTERIFIQQYVKRHPSGLQVWQKLKKEILSED 579
           L D G    GLALST IACT+ +F+Q YVKRHPSGLQVW++L+KEI SED
Sbjct: 521 LVDHGAVTPGLALSTIIACTDNLFLQSYVKRHPSGLQVWEELQKEIHSED 570


>Medtr5g084810.1 | transcription termination factor family protein |
           HC | chr5:36606004-36603602 | 20130731
          Length = 592

 Score =  311 bits (798), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 185/550 (33%), Positives = 302/550 (54%), Gaps = 36/550 (6%)

Query: 33  STKKPIQSKVKPFPKSIVKEAQAALLEYLHSTRSLQFSDADNMCKNSPFFLQDLLKKTQI 92
           ST+ P  S      ++   +AQ AL EYLH T++  FSDA+ + KNSP F+  L+ K  I
Sbjct: 56  STQIPALSPPIYIKRATKIQAQRALFEYLHYTQNYTFSDAEFISKNSPHFIDFLISKINI 115

Query: 93  HNKHKXXXXXXXXXXXXXXKHSISRYLRYHPINEFEPFFESVGLKPSEYASLLPRDMMFL 152
            +                   ++SRYL YHPINEFEPF ES+G+  ++    LP+   FL
Sbjct: 116 PDDGDVF-------------RALSRYLMYHPINEFEPFLESLGINHTKLEKFLPKGCYFL 162

Query: 153 NDDALLMENYQTLCNFGVQRTKVGRIFKRAPEVFRYESGVLSLKLKAYEELGVAASTLVD 212
            DD++L++N+  LC  GV R ++ +I+  A E+F Y +GVL  K +AYE+LG++ S+L+ 
Sbjct: 163 CDDSVLVDNFHVLCYHGVPRNRMAKIYTEAREIFGYGNGVLEKKFQAYEDLGLSKSSLIK 222

Query: 213 AVAASPSLLVGDVDLDFVKVVEKLKEHFVAKGGGWVEEHFLDGGVYCNWGMVLRLLCLLS 272
                P LLVGDVD +FV V++ LK   +     W          Y +W  ++  L    
Sbjct: 223 LFVCCPLLLVGDVDSEFVVVLDWLKR--IGIESKWFVNCMSSSNTY-SWKRMIETLEFFH 279

Query: 273 EVGFSEGQIDELIRDRPCVVFQESGGRALSLIAFLSKF---GLAVDRIALMFLEFPQIRI 329
           +VG+SE  + +L +  P ++  E  GR L L  FL +F   G+ V+ +   F+E   +  
Sbjct: 280 QVGYSEKHMYDLFKVDPNLLL-EGLGRKLYL--FLGRFIKSGVDVNVVCSCFIEHSDMLS 336

Query: 330 DKFYTNLRRCLQFLTEIEMQGEEIGSIFQSHTLLLGSFTMKKTKSLLVDMNVGRKRLCRM 389
            K   NL   + FL  I M+ ++I  +  ++  +L   ++K  +++ +++ V +  LCR+
Sbjct: 337 SKRVENLMSVISFLYNIRMEQDDIAHVLSNYMHILSKHSIKGYRAVCMELGVPKADLCRI 396

Query: 390 VQDNPQEMKNWAMGIRVQPMVSVKAEQQTM------LRKTEFLVRWGFVENENSENLKEA 443
           + D+P E+ + A   + +     ++  Q+       L KT FL++ G++  ENSE ++EA
Sbjct: 397 INDDPLELISLACKQKHK-----RSGGQSYCVPLSKLEKTAFLLKLGYI--ENSEEMEEA 449

Query: 444 FKLFRGRGTELQERFDLIVNAGVDSEDVRKMLRVSPQIINQSIDRIKMKMEYLVKE-GYS 502
            KLF GRG +LQER D +V AG+D     +M++  P+I+    + I+ K+++L    GY 
Sbjct: 450 VKLFPGRGDQLQERLDCLVEAGLDCSTAIRMVKRVPKILVLKRNVIQKKIDFLKNTLGYP 509

Query: 503 ISDLVTFPSFLSYTPSRVKLRLSMNNWLKDQGVADAGLALSTTIACTERIFIQQYVKRHP 562
           I  LV +P++      R+  R+SM  WLK++      L+LST ++  E+ F+Q +V  HP
Sbjct: 510 IECLVRYPTYFLQDVDRMSARVSMYEWLKERNAVSHALSLSTIVSYDEKRFVQVFVNMHP 569

Query: 563 SGLQVWQKLK 572
            G  +WQ++K
Sbjct: 570 EGPTIWQRIK 579


>Medtr7g080620.1 | transcription termination factor family protein |
           HC | chr7:30698662-30694614 | 20130731
          Length = 737

 Score =  174 bits (442), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 136/558 (24%), Positives = 259/558 (46%), Gaps = 55/558 (9%)

Query: 34  TKKPIQSKVKPFPKSIVKEAQAALLEYLHSTRSLQFSDADNMCKNSPFFLQDLLKKTQIH 93
           +K PI+ +       ++ EAQ AL +YLH+T+S+ F+ A+++  N+   L +L+ K    
Sbjct: 47  SKIPIKHR-----NHVIYEAQKALTDYLHNTKSIPFTYAEHIGNNTFCSLTNLISKVNF- 100

Query: 94  NKHKXXXXXXXXXXXXXXKHSISRYLRYHPINEFEPFFESVGLKPSEYASLLPRDMMFLN 153
                              ++I R +R+HPINEFE FFES+G+  +  + LLP D +F +
Sbjct: 101 -------------SPPTFSNNIKRVIRFHPINEFEVFFESIGIDYTLVSDLLPNDKLFFS 147

Query: 154 DDALLMENYQTLCNFGVQRTKVGRIFKRAPEVFRYESGVLSLKLKAYEELGVAASTLVDA 213
           +D  L+E    LC+FG    K+G ++     +F      L L+L  ++  G     ++  
Sbjct: 148 EDRTLLEAACVLCDFGFPWEKLGVLYMEKSSIFGKSVEELKLRLCWFKRFGFGNVEVIGI 207

Query: 214 VAASPSLLVGDVD------LDFVKVVEKLKEHFVAKG-GGWVEEHFLDGGVYCNWGMVLR 266
             A P +L  +VD           +   LK  F+    G +VE      G   +W  V R
Sbjct: 208 CLAFPFVLSEEVDQIQKGVFGIDGLFSDLKLIFLDNSLGSYVE------GNVDSWYEVCR 261

Query: 267 LLCLLSEVGFSEGQIDELIRDRPCVVFQESGGRALSLIAFLSKFGLAVDRIALMFLEFPQ 326
            L +  ++   +G + EL+     +         +  + +L +FG   + +AL+ L+ P+
Sbjct: 262 KLRMFFDLSGWKGNVGELMGKNKSIFVDHKEDEIVHRVEYLCRFGGKKEEVALLILQCPE 321

Query: 327 IRIDKFYTNLRRCLQFLTEIEMQGEEIGSIFQSHTLLLGSFTMKKTKSLLVDMNVGRKRL 386
           +        +   L+ L    M  +++  + ++   +LG+  M    +++  M + ++  
Sbjct: 322 VLKLDLEKTVINVLELLKHFGMSSKDLEDVIENFGHVLGTIRMVNLPNVMRAMGL-QEWF 380

Query: 387 CRMVQDNPQEM--------------KNWAMGIRVQPMVSVKAEQQTMLRKTEFLVRWGFV 432
           C  ++    ++              K +  G+R    + +   +   + K  FL R GF 
Sbjct: 381 CDKLKGGHHQLLADYIASDRNEDRDKVYQDGLR---RIHISRARVHSINKLNFLHRLGFG 437

Query: 433 ENENSENLKEAFKLFRGRGTELQERFDLIVNAGVDSEDVRKMLRVSPQIINQSIDRIKMK 492
           EN  + NL +      G  +ELQERFD ++ + ++   +  M+R +P+I+NQ+ + I+ K
Sbjct: 438 ENALTMNLLDC---LHGTSSELQERFDCLLRSRIEFSKLCMMVRKTPRILNQNYEIIEQK 494

Query: 493 MEYL-VKEGYSISDLVTFPSFLSY-TPSRVKLRLSMNNWLKDQGVADAGLALSTTIACTE 550
           + +   K G ++  L TFP+ L Y    R+  R   + WL ++G++    ++ + I  +E
Sbjct: 495 VIFFNQKMGTTLDYLETFPAMLHYHLDDRIIPRYRFHTWLTERGLSYRKYSVQSMITDSE 554

Query: 551 RIFIQQYVKRHPSGLQVW 568
           + F+ +  K HP+  + W
Sbjct: 555 KKFVARVFKIHPAAPKHW 572


>Medtr8g005155.1 | transcription termination factor family protein |
           HC | chr8:75123-77422 | 20130731
          Length = 564

 Score =  169 bits (429), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 139/561 (24%), Positives = 263/561 (46%), Gaps = 54/561 (9%)

Query: 32  HSTKKPIQSKVKPFPKSIVKEAQAALLEYLHSTRSLQFSDADNMCKNSPFFLQDLLKKTQ 91
           +S+KK I  + K   K +V +AQ AL EYLHSTRS+ ++ AD + KNS   L +L+ K  
Sbjct: 22  NSSKKEIPCRYK---KLVVSQAQKALTEYLHSTRSIPYAFADQISKNSFHSLSNLISKLG 78

Query: 92  IHNKHKXXXXXXXXXXXXXXKHSISRYLRYHPINEFEPFFESVGLKPSEYASLLPRDMMF 151
             +  K                 I ++LRY+PINEFE FFES+G+  +  +SLLP D  F
Sbjct: 79  SFSPKKLDSFTK----------KIEKFLRYNPINEFEFFFESIGIHHTHISSLLPNDKFF 128

Query: 152 LNDDALLMENYQTLCNFGVQRTKVGRIFKRAPEVFRYESGVLSLKLKAYEELGVAASTLV 211
             DD  L+++   LC FG    K+G I+  +  +FR     +  +L   +  G     +V
Sbjct: 129 FCDDGSLLDSACVLCEFGFPWDKLGVIYTESGFMFRKSGSEIKGRLCLLKRYGFCNVQIV 188

Query: 212 DAVAASPSLLVGDVDLDFV-----KVVEKLKEHFVAKGGGWVEEHFLDGGVYCN---WGM 263
            A+  +   + G  + +FV     +++  L+  F+        +  L G V  N   W  
Sbjct: 189 -AICLTFPFVFGVEEREFVDDEVDRLLSDLRLVFL--------DFDLVGCVEGNVDVWYD 239

Query: 264 VLRLLCLLSEVGFSEGQIDELIRDRPCVVFQESGGRALSLIAFLSKFGLAVDRIALMFLE 323
           V R + +  ++   +G+I ELI     ++ +      +  + F  +F +  + +A + L+
Sbjct: 240 VCRKIKVFYDLSDGKGKIGELIGRNKHLILEYGEEELIEKVEFFCRFSVEKEEVARLILQ 299

Query: 324 FPQIRIDKFYTNLR---RCLQFLTEIEMQGEEIGSIFQSHTLLLGSFTMKKTKSLLVDMN 380
                ++    NL      L+ L  I +    +G + +++   LG+  M    +++  M 
Sbjct: 300 ----GLELLSLNLEATINVLKLLKHIGVDSTGLGDVKKNYAYALGTIKMANLPNVMRAMG 355

Query: 381 V-----------GRKRLCRMVQDNPQEMKNWAMGIRVQPMVSVKAEQQTMLRKTEFLVRW 429
           +             K L   +   P E  +       + +   +     M  K  F+   
Sbjct: 356 LREWFFDKIKDGNHKLLVDFITSYPNEEPDKGYQSGFKAIHDARLPSHNM-SKLNFMHTI 414

Query: 430 GFVENENSENLKEAFKLFRGRGTELQERFDLIVNAGVDSEDVRKMLRVSPQIINQSIDRI 489
           GF EN  + ++        G   EL +RFD +++ G++   + K++   P+I++Q+ + +
Sbjct: 415 GFGENAMTMDI---LTHMHGTSEELHKRFDCLLHLGIEFSKLCKIITKLPKILSQNPETL 471

Query: 490 KMKMEYLVKE-GYSISDLVTFPSFLSYT-PSRVKLRLSMNNWLKDQGVADAGLALSTTIA 547
           + K+ +L ++ G+S+  L TFP+F+S+   +R+K R   + W  ++G+     ++++ +A
Sbjct: 472 EKKINFLCQDMGHSLELLDTFPAFISFDLENRIKPRFRFHMWALEKGLYSKNYSIASLVA 531

Query: 548 CTERIFIQQYVKRHPSGLQVW 568
            +++ F+ +  K HP+  + W
Sbjct: 532 TSDKGFVGRVFKIHPAAPKHW 552


>Medtr2g437060.1 | mTERF protein | LC | chr2:14494126-14497351 |
           20130731
          Length = 395

 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/288 (18%), Positives = 119/288 (41%), Gaps = 20/288 (6%)

Query: 275 GFSEGQIDELIRDRPCVVFQESGGRALSLIAFLSKFGLAVDRIALMFLEFPQIRIDKFYT 334
           GFS+ Q+ + I   P ++      R L    F    G +   I  +  + P++       
Sbjct: 101 GFSDSQLHDTIAKMPGLLSCNPSKRVLPKFQFFLSKGASTSDIVNLVCKNPRVLSVSLKN 160

Query: 335 NLRRCLQFLTEIEMQGEEIGSIFQSHTLLLGSFTMKKTKSLLVDMNVGRKRLCRMVQDNP 394
            +    + +       +EI ++   ++ L    +++   ++L++  V    + R+++++ 
Sbjct: 161 QIVPTYELVYRFLQSDKEILALLNYNSNLFCDPSVQNNITMLIENGVSDSNIKRLLREHS 220

Query: 395 QEMKNWAMGIRVQPMVSVKAEQQTMLRKTEFLVRWGFVENENSENLKEAFKLFRGRGTEL 454
           +  K                  + ML+  + L   GF  ++ +  +    K    + T  
Sbjct: 221 RAFKT-----------------RDMLKLVKELKDLGFNHSKTTFGVALIAKSSTTK-TLW 262

Query: 455 QERFDLIVNAGVDSEDVRKMLRVSPQIINQSIDRIKMKMEYLVKE-GYSISDLVTFPSFL 513
           +E+ D +   G   EDV +  R  P  +  SID+I + M + V + G+    +   P  L
Sbjct: 263 KEKVDALKKWGWSDEDVLQAFRKQPHCMITSIDKINLVMSFWVNQLGWDAMAIAKTPDIL 322

Query: 514 SYT-PSRVKLRLSMNNWLKDQGVADAGLALSTTIACTERIFIQQYVKR 560
           S +   R+  R ++  +L + G+ +   +L      TE++F+  ++KR
Sbjct: 323 SLSLEKRIIPRATVVQFLLNNGLRNKNASLIYPFLRTEKLFLDMFIKR 370