Miyakogusa Predicted Gene

Lj1g3v4316420.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4316420.1 Non Characterized Hit- tr|G7KVB8|G7KVB8_MEDTR
Putative uncharacterized protein OS=Medicago truncatul,70,1e-16,
,CUFF.32237.1
         (60 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g093000.1 | transcription termination factor family protei...    91   3e-19

>Medtr7g093000.1 | transcription termination factor family protein |
           HC | chr7:36920060-36916504 | 20130731
          Length = 571

 Score = 90.9 bits (224), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 42/60 (70%), Positives = 48/60 (80%)

Query: 1   MKMEYLVKEGYSISDLVTFPSFLSYTPSRVKLRLSMNNWLKDQGVADAGLALSTTIACTE 60
           MK+EYLVK+G+S+SDLV FPS+LSY   RVKLRLSM NWL D G    GLALST IACT+
Sbjct: 482 MKIEYLVKKGFSVSDLVNFPSYLSYKSPRVKLRLSMYNWLVDHGAVTPGLALSTIIACTD 541