Miyakogusa Predicted Gene

Lj1g3v4289040.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4289040.2 CUFF.32202.2
         (115 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g071090.1 | minichromosome maintenance (MCM2/3/5) family p...   111   1e-25

>Medtr4g071090.1 | minichromosome maintenance (MCM2/3/5) family
           protein | HC | chr4:26787983-26782650 | 20130731
          Length = 840

 Score =  111 bits (278), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 48/66 (72%), Positives = 54/66 (81%)

Query: 48  SDFERMVSFKGMIIQCSSIIAEIREAIFRCLVCGFCTEPVAVERGRITVPTICLREDCTG 107
           SD ERMVS KGMII+CSSII EIREAIFRCLVCGFC++PV VERGRI  PT+CLRE+C  
Sbjct: 237 SDIERMVSMKGMIIRCSSIIPEIREAIFRCLVCGFCSDPVPVERGRIAEPTVCLREECQS 296

Query: 108 SQPMQV 113
              M +
Sbjct: 297 RNSMTL 302