Miyakogusa Predicted Gene

Lj1g3v4237990.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4237990.1 Non Characterized Hit- tr|B3RMG9|B3RMG9_TRIAD
Putative uncharacterized protein OS=Trichoplax
adhaere,31.25,0.00000000003,tRNA_int_end_N2,tRNA-splicing
endonuclease, subunit Sen54, N-terminal,CUFF.32116.1
         (212 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g090105.1 | tRNA-splicing endonuclease subunit sen54 amine...   348   2e-96
Medtr8g090105.2 | tRNA-splicing endonuclease subunit sen54 amine...   348   2e-96

>Medtr8g090105.1 | tRNA-splicing endonuclease subunit sen54
           amine-terminal protein | HC | chr8:37741275-37738113 |
           20130731
          Length = 269

 Score =  348 bits (892), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 166/212 (78%), Positives = 187/212 (88%)

Query: 1   MGMAEVIEKSGKMWVTTGIVRGGKTYSSIEETLYLMELGALDLFDNSDRSISLIEMYEKV 60
           MGMAEVIEK+GKMWV+TGIVR GK Y+S EETLY MELGAL L D+ +RSIS+IEMYEKV
Sbjct: 58  MGMAEVIEKNGKMWVSTGIVRSGKIYTSFEETLYFMELGALHLVDSENRSISIIEMYEKV 117

Query: 61  AGGKSGCCWELFEVYRHLKSLGYIIRRHDVAWSLKSVRSSHNPIALEATEESSQLEEMGS 120
           +   +GCCWELFE YRHLKSLGYII RH+ AWSLKS+RSS   +ALE TEES Q+ +MGS
Sbjct: 118 SSRMTGCCWELFEAYRHLKSLGYIIGRHNFAWSLKSIRSSQKQVALEGTEESKQIVDMGS 177

Query: 121 KVELCINKLFGELKISDVKPDFDIYLPNSRFRKSSPGDPNFLLYLSRSNPPSRAEIEALE 180
           KVE  I+KLFGELKI+++KPDFDIYLP+SRFRKSSPGDPNFLLYLSR + PSRAEIE LE
Sbjct: 178 KVEHSISKLFGELKINELKPDFDIYLPDSRFRKSSPGDPNFLLYLSRGHLPSRAEIETLE 237

Query: 181 RQCDGIPLKICLVTEGRVSFFSFDKVELPVLP 212
           +QC+GIPLKICLVTEGRVSFFSFDKVELP LP
Sbjct: 238 KQCEGIPLKICLVTEGRVSFFSFDKVELPALP 269


>Medtr8g090105.2 | tRNA-splicing endonuclease subunit sen54
           amine-terminal protein | HC | chr8:37741275-37738113 |
           20130731
          Length = 269

 Score =  348 bits (892), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 166/212 (78%), Positives = 187/212 (88%)

Query: 1   MGMAEVIEKSGKMWVTTGIVRGGKTYSSIEETLYLMELGALDLFDNSDRSISLIEMYEKV 60
           MGMAEVIEK+GKMWV+TGIVR GK Y+S EETLY MELGAL L D+ +RSIS+IEMYEKV
Sbjct: 58  MGMAEVIEKNGKMWVSTGIVRSGKIYTSFEETLYFMELGALHLVDSENRSISIIEMYEKV 117

Query: 61  AGGKSGCCWELFEVYRHLKSLGYIIRRHDVAWSLKSVRSSHNPIALEATEESSQLEEMGS 120
           +   +GCCWELFE YRHLKSLGYII RH+ AWSLKS+RSS   +ALE TEES Q+ +MGS
Sbjct: 118 SSRMTGCCWELFEAYRHLKSLGYIIGRHNFAWSLKSIRSSQKQVALEGTEESKQIVDMGS 177

Query: 121 KVELCINKLFGELKISDVKPDFDIYLPNSRFRKSSPGDPNFLLYLSRSNPPSRAEIEALE 180
           KVE  I+KLFGELKI+++KPDFDIYLP+SRFRKSSPGDPNFLLYLSR + PSRAEIE LE
Sbjct: 178 KVEHSISKLFGELKINELKPDFDIYLPDSRFRKSSPGDPNFLLYLSRGHLPSRAEIETLE 237

Query: 181 RQCDGIPLKICLVTEGRVSFFSFDKVELPVLP 212
           +QC+GIPLKICLVTEGRVSFFSFDKVELP LP
Sbjct: 238 KQCEGIPLKICLVTEGRVSFFSFDKVELPALP 269