Miyakogusa Predicted Gene

Lj1g3v4157110.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4157110.1 Non Characterized Hit- tr|I1JUS7|I1JUS7_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,88.87,0,seg,NULL;
SUBFAMILY NOT NAMED,NULL; EUKARYOTIC TRANSLATION INITIATION FACTOR
3,NULL; Paf67,Translati,CUFF.32131.1
         (479 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g110068.1 | RNA polymerase I-associated factor PAF67 | HC ...   840   0.0  
Medtr3g109300.1 | 26S proteasome non-ATPase regulatory subunit-l...    84   3e-16

>Medtr3g110068.1 | RNA polymerase I-associated factor PAF67 | HC |
           chr3:50953251-50948786 | 20130731
          Length = 511

 Score =  840 bits (2169), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/494 (83%), Positives = 427/494 (86%), Gaps = 22/494 (4%)

Query: 7   DEQRQPPQEAGYDPNYVP----------------------HQMYETSFQTLSERLFKDTP 44
           DE+R   Q+ GYDPN+VP                      HQMYETSFQTLSER FKDTP
Sbjct: 4   DEERLQAQDLGYDPNFVPDPVKTFVVHLYRHIREKNVYEIHQMYETSFQTLSERFFKDTP 63

Query: 45  WPSVDAGAHYGDNDNAFCLLYREMRCRHLYARLTPKLRQRIESWDNYCPLFQVVLHGVVN 104
           WPSVDA A Y DND+ FCLLYREM  RHLYARLTP LRQRI+SWDNYC LFQVVLHGVVN
Sbjct: 64  WPSVDAVAQYVDNDHVFCLLYREMWFRHLYARLTPTLRQRIDSWDNYCSLFQVVLHGVVN 123

Query: 105 MQLPNQWLWDMVDEFVYQFQSFCQYRAKMKNKTEQEIALLRQFDQAWNVYGVLNYLQALV 164
           MQLPNQWLWDMVDEFVYQFQSFCQYRAKMKNKTEQEIALL+QFDQAWNV+GVLN+LQALV
Sbjct: 124 MQLPNQWLWDMVDEFVYQFQSFCQYRAKMKNKTEQEIALLKQFDQAWNVFGVLNFLQALV 183

Query: 165 EKSAIIQILEQEKEGLEQFTATDGYDYNGGSNVLKVLGYFSMVGLLRVHCLLGDYHTGLK 224
           EKS IIQILEQEKEGLEQFT+ DGYDYNGGSNVLKVLGYFSMVGLLRVHCLLGDYHTGLK
Sbjct: 184 EKSTIIQILEQEKEGLEQFTSNDGYDYNGGSNVLKVLGYFSMVGLLRVHCLLGDYHTGLK 243

Query: 225 CLLPIDITQQGVYTSVIGSHITTIYHYGFANLMLRRYVEAIREFNKILLYIYKTKQYHNK 284
           CL PIDI+Q GVYT VIG HITTIYHYGFANLMLRRYV+AIREFNKILLYI+K K YH K
Sbjct: 244 CLEPIDISQSGVYTIVIGCHITTIYHYGFANLMLRRYVDAIREFNKILLYIFKYKVYHQK 303

Query: 285 SPQYEQILKKNEQMYALLAICLSLCPQSRLVDETVNSQLREKYGEKMGRMQRYDDEAFAM 344
           SPQYEQILKKNEQMYALLAI LSLCPQSRLVDETVNSQLREKYGEKM RMQRYDDEAFAM
Sbjct: 304 SPQYEQILKKNEQMYALLAISLSLCPQSRLVDETVNSQLREKYGEKMSRMQRYDDEAFAM 363

Query: 345 YDELFSYACPKFITPSAPSFDEPLVNYNQDAYRLQLKLFLYEAKQQQLLSGLRTFLKVYS 404
           YDELFSYACPKFITPSAPSF+EPLVNYNQDAYRLQLKLFLYEAKQQQLLSGLRTFLKVYS
Sbjct: 364 YDELFSYACPKFITPSAPSFEEPLVNYNQDAYRLQLKLFLYEAKQQQLLSGLRTFLKVYS 423

Query: 405 TISLAKLASYMEVDEPTLRTILTTYKHKTHAVDSDGKITSNADVDFYIDEVSAXXXXXXX 464
           TISLAKLASYMEVDEPTLRTIL TYKHKTHAVDS GKI SNADVDFYID+ +        
Sbjct: 424 TISLAKLASYMEVDEPTLRTILMTYKHKTHAVDSAGKIISNADVDFYIDDDTIHVVESKP 483

Query: 465 XXXEGFLFLNTALK 478
               G  FL   +K
Sbjct: 484 SKRYGDYFLRQVVK 497


>Medtr3g109300.1 | 26S proteasome non-ATPase regulatory subunit-like
           protein | LC | chr3:50533714-50540516 | 20130731
          Length = 671

 Score = 84.0 bits (206), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 50/103 (48%), Positives = 62/103 (60%), Gaps = 23/103 (22%)

Query: 260 RYVEAIREFNKILLYIYKTKQYHNKSPQYEQILK--KNEQMYALLAICLS-LCPQSRLVD 316
           +YV+AI EFN ILLYI+ TK Y+ KSPQYE+ILK  KNEQ   +  +  S +CPQS    
Sbjct: 141 KYVQAICEFNIILLYIFTTKVYYQKSPQYERILKRNKNEQNACVAFVSRSGICPQS---- 196

Query: 317 ETVNSQLREKYGEKMGRMQRYDDEAFAMYDELFSYACPKFITP 359
                           + +RYDDEAF +YDELF YAC K + P
Sbjct: 197 ----------------KCKRYDDEAFDVYDELFPYACHKKLFP 223