Miyakogusa Predicted Gene
- Lj1g3v4144840.3
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v4144840.3 Non Characterized Hit- tr|C6SWB5|C6SWB5_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.53426 PE,52,1e-18,
,CUFF.32011.3
(113 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr7g089940.1 | transmembrane protein, putative | HC | chr7:35... 141 1e-34
>Medtr7g089940.1 | transmembrane protein, putative | HC |
chr7:35253956-35255120 | 20130731
Length = 157
Score = 141 bits (356), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 71/101 (70%), Positives = 86/101 (85%), Gaps = 2/101 (1%)
Query: 13 AGTDEKKVNELNTILDKFYDDNIKDATINFPEFYRGVCEIVEELNEKRGNTQFKLPETEV 72
GTDEKK EL I+DKFY+ +IK+A+ +FPEFYRGVCEIVEELN+K G TQFKLP T+
Sbjct: 10 PGTDEKKAKELGPIIDKFYEKDIKNASRDFPEFYRGVCEIVEELNKKFGYTQFKLPGTKE 69
Query: 73 LKKAYKYNENHKGKDKALKKSEFKEIMKEMVKESGFTGIGA 113
L+KA YNE+HKGK+K L K+EF+EIMKEM+KESGFTG+GA
Sbjct: 70 LEKA--YNEHHKGKNKELTKAEFQEIMKEMIKESGFTGVGA 108