Miyakogusa Predicted Gene

Lj1g3v4139600.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4139600.1 Non Characterized Hit- tr|D8U488|D8U488_VOLCA
Putative uncharacterized protein OS=Volvox carteri
GN=,34.1,3e-19,SPC25,Signal peptidase complex subunit 2; SUBFAMILY NOT
NAMED,NULL; MICROSOMAL SIGNAL PEPTIDASE 25 K,CUFF.31989.1
         (181 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g081900.1 | microsomal signal peptidase 25 kDa subunit | H...   266   1e-71

>Medtr5g081900.1 | microsomal signal peptidase 25 kDa subunit | HC |
           chr5:35130564-35127667 | 20130731
          Length = 189

 Score =  266 bits (679), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 134/189 (70%), Positives = 150/189 (79%), Gaps = 8/189 (4%)

Query: 1   MASKSPKKTNLLDHNSIKHILDESVSEIVKSNGYVEDVRLSNVRXXXXXXXXXXXXFSQF 60
           MA+K  KK NLLDH+SIKHILDES SE++   GYVEDV+LSN+R            F+QF
Sbjct: 1   MATKGQKKANLLDHHSIKHILDESASEVITGRGYVEDVKLSNIRLLLGSVIIVIALFAQF 60

Query: 61  YKKKFPENKDFVLACIALY-----VIFNGLLQLIIYTKEKDAILFTYPPAGS--GTGLVV 113
           YKKKFPEN+DF+LACIALY      +F   + LIIYTKEK+AILFTYP  GS   TGLVV
Sbjct: 61  YKKKFPENRDFLLACIALYPFHTFYLFTVCICLIIYTKEKNAILFTYPLTGSFTSTGLVV 120

Query: 114 SSKLPRFSDMYTLTIASAEPKSISTNEPVHFTKSVTQWFTNDGILVEGLFWKDVEALIAQ 173
           SSKLPRFSDMYTLTI SA+PKS+S NEPVH TKSVTQWFT DG+LVEGLFWK+VEALIAQ
Sbjct: 121 SSKLPRFSDMYTLTIESADPKSVSANEPVHLTKSVTQWFTKDGVLVEGLFWKEVEALIAQ 180

Query: 174 YTK-PKKSK 181
           YTK PKKSK
Sbjct: 181 YTKEPKKSK 189