Miyakogusa Predicted Gene

Lj1g3v4139590.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4139590.1 Non Characterized Hit- tr|J3MHX7|J3MHX7_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB07G1,42.38,1e-16,seg,NULL,CUFF.32121.1
         (473 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g081880.1 | hypothetical protein | HC | chr5:35120653-3511...   543   e-154

>Medtr5g081880.1 | hypothetical protein | HC |
           chr5:35120653-35114684 | 20130731
          Length = 693

 Score =  543 bits (1398), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 307/482 (63%), Positives = 346/482 (71%), Gaps = 51/482 (10%)

Query: 1   MKDLLKRKPSVAELSGISKSRLDCFATQLRAFLVXXXXXXXXXXXVCASTSANSTACYNV 60
           MKDLLKRKPS+AELSGISKSR+DCFATQLRAFLV             ASTS NS+   +V
Sbjct: 252 MKDLLKRKPSIAELSGISKSRIDCFATQLRAFLVGSTAGSSHDSSAHASTSVNSSTYCDV 311

Query: 61  AFDNSQTSS---KFPRSRQIGGQTTKGDTMLYQSILSPRSSSFKEIPQRNSSSHRIAARE 117
           AF+NS  SS   KFPRSR I  QTTKGD+ML QSILSPRSSSFKE+P RN SSHR+AARE
Sbjct: 312 AFENSHASSASSKFPRSRHIV-QTTKGDSMLCQSILSPRSSSFKEVPPRNMSSHRVAARE 370

Query: 118 KIKRRGDSYQPAIDNLANDSAYMLNLSSASDLDKSAEVAKSLTFSSGFLGSHGNLTVPSS 177
           KIKRRGD+   A DNL        +LSS SD DK++EV K+L FS  F+GS G  +VPSS
Sbjct: 371 KIKRRGDTQPLAADNL--------DLSSTSDHDKASEVTKTLAFSPSFMGSAGMYSVPSS 422

Query: 178 LGSGGKFPALVSPLFSPYYCWCPPEISA-LPSISA-LPQSSHXXXXXXXXXXXXXXXXNT 235
           LG GG+ P +VSPLFSPYYCWCPP IS+  PSI+A LPQS                  NT
Sbjct: 423 LGPGGEVPPVVSPLFSPYYCWCPPGISSTFPSIAAALPQSPVSFAGSQPLASGASFIPNT 482

Query: 236 VSARLLEPVQPLNLSTSMXXXXXXXXXXXXXXXXXVRMSLPTSQQIPTFTQLMCDPLVRM 295
           ++A L +P+QPLNL +SM                              F     +PLVRM
Sbjct: 483 LAASLFQPIQPLNLGSSM-----------------------------DFPPFFPEPLVRM 513

Query: 296 SLPTSQQIPTFTPLMCDPIVHVPVIDVCSSGQGYLVSAGGPAMSTSIPPLHPKLVNPLIP 355
           SLPTSQQIPTFTPLMCDPIVHVP+IDVCSSGQGYLVSA GPAMSTSIPPLHP LVNPLI 
Sbjct: 514 SLPTSQQIPTFTPLMCDPIVHVPIIDVCSSGQGYLVSA-GPAMSTSIPPLHPNLVNPLIS 572

Query: 356 ESDAVVKGARETLRMLLSGSSQG---AVMDPLPAILTSPDDNR-NVLVTGSRGLYTGTRD 411
           ESDAVVKGARETLR+L+SGSSQG    +M+PLPAILT+ D+N+ NVLV GSRGLYTGTRD
Sbjct: 573 ESDAVVKGARETLRLLISGSSQGNQQVMMNPLPAILTNLDENQNNVLVAGSRGLYTGTRD 632

Query: 412 INVIANSIAAMGFV--SQISNGDNEGDSEVCGNYGIMGTFMNPNDSGGALTDDEGGPSFN 469
           INVIANSIAAMG V  S +SNG+NE DSEVCGNYGI+      ND+GGA + DEGGPS +
Sbjct: 633 INVIANSIAAMGLVSLSGVSNGENESDSEVCGNYGILEAMKKSNDAGGAFS-DEGGPSLD 691

Query: 470 SK 471
           SK
Sbjct: 692 SK 693