Miyakogusa Predicted Gene

Lj1g3v4139580.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4139580.1 Non Characterized Hit- tr|C3ZEV0|C3ZEV0_BRAFL
Putative uncharacterized protein OS=Branchiostoma
flor,34.97,1e-18,SPC25,Signal peptidase complex subunit 2; SUBFAMILY
NOT NAMED,NULL; MICROSOMAL SIGNAL PEPTIDASE 25 K,CUFF.31988.1
         (184 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g081900.1 | microsomal signal peptidase 25 kDa subunit | H...   323   4e-89
Medtr8g093950.1 | microsomal signal peptidase 25 kDa subunit | L...    65   5e-11

>Medtr5g081900.1 | microsomal signal peptidase 25 kDa subunit | HC |
           chr5:35130564-35127667 | 20130731
          Length = 189

 Score =  323 bits (829), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 159/189 (84%), Positives = 171/189 (90%), Gaps = 5/189 (2%)

Query: 1   MASKSLKKANLLDHNSIKHILDESVSEIVTSRGYVEDVRLSNVRLLVGTVIIVIALFAQF 60
           MA+K  KKANLLDH+SIKHILDES SE++T RGYVEDV+LSN+RLL+G+VIIVIALFAQF
Sbjct: 1   MATKGQKKANLLDHHSIKHILDESASEVITGRGYVEDVKLSNIRLLLGSVIIVIALFAQF 60

Query: 61  YKKKFPENRDFLLACIALY-----VIFNGVLQLIIYTKEKNAILFTYPPAGSFTSTGLVV 115
           YKKKFPENRDFLLACIALY      +F   + LIIYTKEKNAILFTYP  GSFTSTGLVV
Sbjct: 61  YKKKFPENRDFLLACIALYPFHTFYLFTVCICLIIYTKEKNAILFTYPLTGSFTSTGLVV 120

Query: 116 SSKLPRFSDMYTLTIASADPKSISANEPKHLTKSVTQWFTKDGVLVEGLFWKDVEALIAQ 175
           SSKLPRFSDMYTLTI SADPKS+SANEP HLTKSVTQWFTKDGVLVEGLFWK+VEALIAQ
Sbjct: 121 SSKLPRFSDMYTLTIESADPKSVSANEPVHLTKSVTQWFTKDGVLVEGLFWKEVEALIAQ 180

Query: 176 YTKEPKKSK 184
           YTKEPKKSK
Sbjct: 181 YTKEPKKSK 189


>Medtr8g093950.1 | microsomal signal peptidase 25 kDa subunit | LC
          | chr8:39309335-39308944 | 20130731
          Length = 79

 Score = 64.7 bits (156), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 33/44 (75%), Positives = 39/44 (88%), Gaps = 1/44 (2%)

Query: 31 SRGYVEDVRLSNVRLLVGTVIIVIALFAQFYKKKFPENRDFLLA 74
          S G VED++LSN+RLL+G+VIIVIALFAQFY KKF EN +FLLA
Sbjct: 37 SGGVVEDMKLSNIRLLLGSVIIVIALFAQFY-KKFLENCNFLLA 79