Miyakogusa Predicted Gene

Lj1g3v4119290.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4119290.1 tr|Q2HSY2|Q2HSY2_MEDTR Cyclin-like F-box
OS=Medicago truncatula GN=MTR_7g089670 PE=4 SV=1,45.45,2e-19,SUBFAMILY
NOT NAMED,NULL; FAMILY NOT NAMED,NULL; F-box domain,F-box domain,
cyclin-like; FBOX,F-box ,CUFF.31961.1
         (110 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g089730.1 | F-box plant-like protein | LC | chr7:35146477-...   136   3e-33
Medtr7g089670.1 | F-box plant-like protein | HC | chr7:35123687-...   100   5e-22
Medtr5g089110.1 | F-box plant-like protein | HC | chr5:38730456-...    96   1e-20
Medtr7g089720.1 | F-box plant-like protein | LC | chr7:35139028-...    96   1e-20
Medtr5g089110.2 | F-box plant-like protein | HC | chr5:38730456-...    95   1e-20
Medtr7g089700.1 | F-box plant-like protein | LC | chr7:35131723-...    94   3e-20
Medtr6g039460.1 | F-box plant-like protein | HC | chr6:14278769-...    92   8e-20
Medtr3g436860.2 | F-box plant-like protein | HC | chr3:12403405-...    90   4e-19
Medtr3g436860.3 | F-box plant-like protein | HC | chr3:12402988-...    90   4e-19
Medtr3g436860.1 | F-box plant-like protein | HC | chr3:12403625-...    90   5e-19
Medtr6g039470.1 | F-box plant-like protein | LC | chr6:14285062-...    82   8e-17
Medtr7g089640.1 | F-box plant-like protein | HC | chr7:35109328-...    79   1e-15
Medtr1030s0010.1 | F-box plant-like protein | HC | scaffold1030:...    77   2e-15
Medtr7g089560.1 | F-box-like protein | LC | chr7:35068582-350681...    52   1e-07

>Medtr7g089730.1 | F-box plant-like protein | LC |
           chr7:35146477-35144993 | 20130731
          Length = 314

 Score =  136 bits (343), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 67/103 (65%), Positives = 81/103 (78%), Gaps = 3/103 (2%)

Query: 11  ISLLNLPEHVLDCILKRLSPMELIKMSEVCTCLRDACRSDHLWENHMKQKWGRIIGDDTF 70
           ISLLN PE +LD IL+RLSP+ELIKMSEVC CLR+ CRSDH WE HMKQKWGR+IG    
Sbjct: 10  ISLLNFPESILDGILERLSPIELIKMSEVCICLRNKCRSDHFWEIHMKQKWGRVIGHVAL 69

Query: 71  EEWQWHLTTIKSGK-TLLNQDIN--QNGSLGSFCDSRPVLYFG 110
           +EWQWH+T+I + + ++LNQ IN  QNGSLGSF  + P+L  G
Sbjct: 70  KEWQWHVTSITAEEGSVLNQQINNIQNGSLGSFSGAWPMLCLG 112


>Medtr7g089670.1 | F-box plant-like protein | HC |
           chr7:35123687-35121860 | 20130731
          Length = 318

 Score = 99.8 bits (247), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 45/99 (45%), Positives = 69/99 (69%), Gaps = 1/99 (1%)

Query: 11  ISLLNLPEHVLDCILKRLSPMELIKMSEVCTCLRDACRSDHLWENHMKQKWGRIIGDDTF 70
           +SLL+LPE  LDCIL+ LSP++L K+++VC+CLR+  ++D+LWE  + Q+WG ++GD  +
Sbjct: 14  VSLLDLPEWALDCILEYLSPLDLCKVAQVCSCLRNRSKNDYLWEKQVNQRWGELLGDIAY 73

Query: 71  EEWQWHLTTIKSGKTLLNQDINQNGSLGSFCDSRPVLYF 109
            EWQWH   + + + LL    NQ+GS G+F    P L+ 
Sbjct: 74  HEWQWHTAKMVNEEILLLHQ-NQSGSCGTFTGVWPSLHL 111


>Medtr5g089110.1 | F-box plant-like protein | HC |
           chr5:38730456-38725757 | 20130731
          Length = 399

 Score = 95.5 bits (236), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 42/76 (55%), Positives = 57/76 (75%)

Query: 11  ISLLNLPEHVLDCILKRLSPMELIKMSEVCTCLRDACRSDHLWENHMKQKWGRIIGDDTF 70
           +S+L+LPE VL+CIL++L P  L +M+ VC  LR+ C SDHLWE HMKQKWGR+IG   +
Sbjct: 84  LSVLDLPELVLECILEKLPPSSLCQMAGVCHSLRERCVSDHLWERHMKQKWGRVIGSVAY 143

Query: 71  EEWQWHLTTIKSGKTL 86
            EW+WH+ T K+  +L
Sbjct: 144 REWKWHVATKKNIGSL 159


>Medtr7g089720.1 | F-box plant-like protein | LC |
           chr7:35139028-35137263 | 20130731
          Length = 323

 Score = 95.5 bits (236), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 43/89 (48%), Positives = 64/89 (71%), Gaps = 4/89 (4%)

Query: 11  ISLLNLPEHVLDCILKRLSPMELIKMSEVCTCLRDACRSDHLWENHMKQKWGRIIGDDTF 70
           +SLL+LP+ ++DCILK LSP +L ++++VCT LR+  R DHLWE H++QKW R++G+D +
Sbjct: 19  VSLLDLPDELVDCILKFLSPQDLFRVAQVCTHLRNISRRDHLWEKHVEQKWSRLLGNDAY 78

Query: 71  EEWQWHLTTIKSGKTLLNQDINQNGSLGS 99
            EW++H T  K     L  D N + SLG+
Sbjct: 79  HEWEYHTTKYKE----LLVDQNLSDSLGT 103


>Medtr5g089110.2 | F-box plant-like protein | HC |
           chr5:38730456-38725757 | 20130731
          Length = 347

 Score = 95.1 bits (235), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 42/76 (55%), Positives = 57/76 (75%)

Query: 11  ISLLNLPEHVLDCILKRLSPMELIKMSEVCTCLRDACRSDHLWENHMKQKWGRIIGDDTF 70
           +S+L+LPE VL+CIL++L P  L +M+ VC  LR+ C SDHLWE HMKQKWGR+IG   +
Sbjct: 84  LSVLDLPELVLECILEKLPPSSLCQMAGVCHSLRERCVSDHLWERHMKQKWGRVIGSVAY 143

Query: 71  EEWQWHLTTIKSGKTL 86
            EW+WH+ T K+  +L
Sbjct: 144 REWKWHVATKKNIGSL 159


>Medtr7g089700.1 | F-box plant-like protein | LC |
           chr7:35131723-35130047 | 20130731
          Length = 324

 Score = 94.0 bits (232), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 43/89 (48%), Positives = 64/89 (71%), Gaps = 4/89 (4%)

Query: 11  ISLLNLPEHVLDCILKRLSPMELIKMSEVCTCLRDACRSDHLWENHMKQKWGRIIGDDTF 70
           +SLL+LP+ ++DCILK LSP +L ++++VCT LR+  R DHLWE H++QKW R++G+D +
Sbjct: 20  VSLLDLPDELVDCILKCLSPQDLFRVAQVCTHLRNISRRDHLWEKHVEQKWSRLLGNDAY 79

Query: 71  EEWQWHLTTIKSGKTLLNQDINQNGSLGS 99
            EW++H T  K     L  D N + SLG+
Sbjct: 80  HEWEYHTTKYKE----LLVDRNLSDSLGT 104


>Medtr6g039460.1 | F-box plant-like protein | HC |
          chr6:14278769-14276701 | 20130731
          Length = 323

 Score = 92.4 bits (228), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 39/83 (46%), Positives = 64/83 (77%), Gaps = 2/83 (2%)

Query: 11 ISLLNLPEHVLDCILKRLSPMELIKMSEVCTCLRDACRSDHLWENHMKQKWGRIIGDDTF 70
          +SLL+LP+ ++ CILKRLSP +L ++S+VC+ LR+  R D LWE H++QKW R++GDD +
Sbjct: 19 VSLLDLPDEIVHCILKRLSPQDLYRISQVCSRLRNISRGDCLWEKHVEQKWSRLVGDDAY 78

Query: 71 EEWQWHLTTIKSGKTLLNQDINQ 93
           EW++H T  K  + L++Q++++
Sbjct: 79 HEWEYHTTKYK--ELLVDQNLSE 99


>Medtr3g436860.2 | F-box plant-like protein | HC |
           chr3:12403405-12408412 | 20130731
          Length = 378

 Score = 90.1 bits (222), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 37/79 (46%), Positives = 57/79 (72%)

Query: 1   MENTEKRGNMISLLNLPEHVLDCILKRLSPMELIKMSEVCTCLRDACRSDHLWENHMKQK 60
           +EN E+  + +SLL+LPE +L+CIL++L P  L +M+ +C  LR+ C SD+ WE HMK+K
Sbjct: 77  VENVEEIEDKLSLLDLPELILECILEKLPPSSLCQMAGICHSLRERCVSDYFWERHMKKK 136

Query: 61  WGRIIGDDTFEEWQWHLTT 79
           WG +IG   + EW+WH+ +
Sbjct: 137 WGGVIGQAAYREWKWHVAS 155


>Medtr3g436860.3 | F-box plant-like protein | HC |
           chr3:12402988-12406347 | 20130731
          Length = 378

 Score = 90.1 bits (222), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 37/79 (46%), Positives = 57/79 (72%)

Query: 1   MENTEKRGNMISLLNLPEHVLDCILKRLSPMELIKMSEVCTCLRDACRSDHLWENHMKQK 60
           +EN E+  + +SLL+LPE +L+CIL++L P  L +M+ +C  LR+ C SD+ WE HMK+K
Sbjct: 77  VENVEEIEDKLSLLDLPELILECILEKLPPSSLCQMAGICHSLRERCVSDYFWERHMKKK 136

Query: 61  WGRIIGDDTFEEWQWHLTT 79
           WG +IG   + EW+WH+ +
Sbjct: 137 WGGVIGQAAYREWKWHVAS 155


>Medtr3g436860.1 | F-box plant-like protein | HC |
          chr3:12403625-12408078 | 20130731
          Length = 335

 Score = 89.7 bits (221), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 37/79 (46%), Positives = 57/79 (72%)

Query: 1  MENTEKRGNMISLLNLPEHVLDCILKRLSPMELIKMSEVCTCLRDACRSDHLWENHMKQK 60
          +EN E+  + +SLL+LPE +L+CIL++L P  L +M+ +C  LR+ C SD+ WE HMK+K
Sbjct: 12 VENVEEIEDKLSLLDLPELILECILEKLPPSSLCQMAGICHSLRERCVSDYFWERHMKKK 71

Query: 61 WGRIIGDDTFEEWQWHLTT 79
          WG +IG   + EW+WH+ +
Sbjct: 72 WGGVIGQAAYREWKWHVAS 90


>Medtr6g039470.1 | F-box plant-like protein | LC |
           chr6:14285062-14283530 | 20130731
          Length = 246

 Score = 82.4 bits (202), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 35/85 (41%), Positives = 61/85 (71%), Gaps = 2/85 (2%)

Query: 11  ISLLNLPEHVLDCILKRLSPMELIKMSEVCTCLRDACRSDHLWENHMKQKWGRIIGDDTF 70
           +SLL+L + V+ CI+K LS  +L ++++VCT LR+  RSD+LWE H++QKW  ++G+D +
Sbjct: 91  VSLLDLSDEVVHCIIKHLSSQDLFRIAQVCTNLRNMSRSDYLWEKHVEQKWSMLVGNDAY 150

Query: 71  EEWQWHLTTIKSGKTLLNQDINQNG 95
            EW++H T  K    L++Q++ ++ 
Sbjct: 151 HEWEYHTTKYKG--LLVDQNLRRSS 173


>Medtr7g089640.1 | F-box plant-like protein | HC |
           chr7:35109328-35106604 | 20130731
          Length = 394

 Score = 78.6 bits (192), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 54/86 (62%), Gaps = 1/86 (1%)

Query: 23  CILKRLSPMELIKMSEVCTCLRDACRSDHLWENHMKQKWGRIIGDDTFEEWQWHLTTIKS 82
           CIL++LSP EL  +++VC  LR+ CRSD+LWE HMK KWG+I+GD  + +W+ ++ + KS
Sbjct: 100 CILEKLSPSELCNVAQVCKSLREKCRSDYLWEKHMKMKWGKILGDSAYRQWKCYVAS-KS 158

Query: 83  GKTLLNQDINQNGSLGSFCDSRPVLY 108
            +   NQ  NQ   L       P  +
Sbjct: 159 IEKNSNQHKNQKTVLAFLHAFLPFFW 184


>Medtr1030s0010.1 | F-box plant-like protein | HC |
           scaffold1030:2809-3176 | 20130731
          Length = 122

 Score = 77.4 bits (189), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 57/82 (69%), Gaps = 4/82 (4%)

Query: 24  ILKRLSPMELIKMSEVCTCLRDACRSDHLWENHMKQKWGRIIGDDTFEEWQWHLTTIKSG 83
           ILKRLSP +LI++S+VC+ LR+  R D +WE H++QKW R++GDD + EW++H  T K  
Sbjct: 2   ILKRLSPQDLIRLSQVCSRLRNISRGDCMWEKHVEQKWSRLVGDDAYHEWKYH--TTKCK 59

Query: 84  KTLLNQDINQNGSLGSFCDSRP 105
           + L++Q++++    G+     P
Sbjct: 60  ELLVDQNLSE--PFGTISGDSP 79


>Medtr7g089560.1 | F-box-like protein | LC | chr7:35068582-35068190
           | 20130731
          Length = 130

 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 22/43 (51%), Positives = 31/43 (72%)

Query: 23  CILKRLSPMELIKMSEVCTCLRDACRSDHLWENHMKQKWGRII 65
           CIL++LSP EL  +++VC  LR+ CRS +LWE HMK    +I+
Sbjct: 88  CILEKLSPTELCNVAQVCKSLRERCRSYYLWEKHMKMISSKIL 130