Miyakogusa Predicted Gene

Lj1g3v4118240.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4118240.1 tr|Q2HSY4|Q2HSY4_MEDTR Cyclin-like F-box
OS=Medicago truncatula GN=MtrDRAFT_AC150889g18v2 PE=4
SV=1,37.82,6e-19,FBOX,F-box domain, cyclin-like; no description,NULL;
F-box,F-box domain, cyclin-like; A Receptor for,CUFF.31985.1
         (168 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g089730.1 | F-box plant-like protein | LC | chr7:35146477-...   172   1e-43
Medtr7g089670.1 | F-box plant-like protein | HC | chr7:35123687-...   143   9e-35
Medtr7g089700.1 | F-box plant-like protein | LC | chr7:35131723-...   132   2e-31
Medtr7g089720.1 | F-box plant-like protein | LC | chr7:35139028-...   131   4e-31
Medtr6g039460.1 | F-box plant-like protein | HC | chr6:14278769-...   129   2e-30
Medtr5g089110.1 | F-box plant-like protein | HC | chr5:38730456-...   110   7e-25
Medtr3g436860.1 | F-box plant-like protein | HC | chr3:12403625-...   110   7e-25
Medtr5g089110.2 | F-box plant-like protein | HC | chr5:38730456-...   110   9e-25
Medtr3g436860.2 | F-box plant-like protein | HC | chr3:12403405-...   109   1e-24
Medtr3g436860.3 | F-box plant-like protein | HC | chr3:12402988-...   109   1e-24
Medtr1030s0010.1 | F-box plant-like protein | HC | scaffold1030:...   103   1e-22
Medtr7g089640.1 | F-box plant-like protein | HC | chr7:35109328-...    98   3e-21
Medtr6g039470.1 | F-box plant-like protein | LC | chr6:14285062-...    74   5e-14

>Medtr7g089730.1 | F-box plant-like protein | LC |
           chr7:35146477-35144993 | 20130731
          Length = 314

 Score =  172 bits (436), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 93/165 (56%), Positives = 114/165 (69%), Gaps = 8/165 (4%)

Query: 10  SICLLNLPELILDCILKRLSPMELIKMSEVCTCLRDACRSDHLWENLINQKWGRIINGES 69
           SI LLN PE ILD IL+RLSP+ELIKMSEVC CLR+ CRSDH WE  + QKWGR+I G  
Sbjct: 9   SISLLNFPESILDGILERLSPIELIKMSEVCICLRNKCRSDHFWEIHMKQKWGRVI-GHV 67

Query: 70  TFKEWQWHLTKLNSIE-TLFNINL----DWSLGSLCGSLHELCIGSYLEGCGHVQR-FLS 123
             KEWQWH+T + + E ++ N  +    + SLGS  G+   LC+GSY E C H++   LS
Sbjct: 68  ALKEWQWHVTSITAEEGSVLNQQINNIQNGSLGSFSGAWPMLCLGSYFEECTHLKSLLLS 127

Query: 124 NNPMMGLYLSLDTGKFWFPAQVYCDCALVSNVLFSYDSNTDTFKA 168
           NN  M LYLSL++GKFWFPAQ++     V   L SYDS TDTF+A
Sbjct: 128 NNFKMALYLSLESGKFWFPAQLF-RGLYVHEALLSYDSKTDTFQA 171


>Medtr7g089670.1 | F-box plant-like protein | HC |
           chr7:35123687-35121860 | 20130731
          Length = 318

 Score =  143 bits (360), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 73/168 (43%), Positives = 106/168 (63%), Gaps = 2/168 (1%)

Query: 2   ENAEKHGNSICLLNLPELILDCILKRLSPMELIKMSEVCTCLRDACRSDHLWENLINQKW 61
           +N  +    + LL+LPE  LDCIL+ LSP++L K+++VC+CLR+  ++D+LWE  +NQ+W
Sbjct: 5   KNLIQEDRKVSLLDLPEWALDCILEYLSPLDLCKVAQVCSCLRNRSKNDYLWEKQVNQRW 64

Query: 62  GRIINGESTFKEWQWHLTKLNSIET-LFNINLDWSLGSLCGSLHELCIGSYLEGCGHVQR 120
           G ++ G+  + EWQWH  K+ + E  L + N   S G+  G    L + SYLE    +  
Sbjct: 65  GELL-GDIAYHEWQWHTAKMVNEEILLLHQNQSGSCGTFTGVWPSLHLHSYLENFRDMIS 123

Query: 121 FLSNNPMMGLYLSLDTGKFWFPAQVYCDCALVSNVLFSYDSNTDTFKA 168
            L N P M L+++L+TG+FWFPAQVY       + L SYDS  DTFKA
Sbjct: 124 LLRNCPKMSLFIALETGQFWFPAQVYKKALSCYDALISYDSRNDTFKA 171


>Medtr7g089700.1 | F-box plant-like protein | LC |
           chr7:35131723-35130047 | 20130731
          Length = 324

 Score =  132 bits (332), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 70/162 (43%), Positives = 99/162 (61%), Gaps = 6/162 (3%)

Query: 10  SICLLNLPELILDCILKRLSPMELIKMSEVCTCLRDACRSDHLWENLINQKWGRIINGES 69
            + LL+LP+ ++DCILK LSP +L ++++VCT LR+  R DHLWE  + QKW R++ G  
Sbjct: 19  KVSLLDLPDELVDCILKCLSPQDLFRVAQVCTHLRNISRRDHLWEKHVEQKWSRLL-GND 77

Query: 70  TFKEWQWHLTKLNSIETLFNINLDWSLGSLCGSLHELCIGSYLEGCGHVQRFLSNNPMMG 129
            + EW++H TK    E L + NL  SLG+  G+     I SYL     +   + N+  M 
Sbjct: 78  AYHEWEYHTTKYK--ELLVDRNLSDSLGTTSGNSSFQRIHSYLRINRSMTDLIKNHSKMA 135

Query: 130 LYLSLDTGKFWFPAQVYCDCALV---SNVLFSYDSNTDTFKA 168
           LY+ L+TG+FWFPAQVY    L     + + SYDS TDTF+ 
Sbjct: 136 LYIFLETGRFWFPAQVYKATLLTLHCYDAIVSYDSRTDTFQT 177


>Medtr7g089720.1 | F-box plant-like protein | LC |
           chr7:35139028-35137263 | 20130731
          Length = 323

 Score =  131 bits (329), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 68/162 (41%), Positives = 99/162 (61%), Gaps = 6/162 (3%)

Query: 10  SICLLNLPELILDCILKRLSPMELIKMSEVCTCLRDACRSDHLWENLINQKWGRIINGES 69
            + LL+LP+ ++DCILK LSP +L ++++VCT LR+  R DHLWE  + QKW R++ G  
Sbjct: 18  KVSLLDLPDELVDCILKFLSPQDLFRVAQVCTHLRNISRRDHLWEKHVEQKWSRLL-GND 76

Query: 70  TFKEWQWHLTKLNSIETLFNINLDWSLGSLCGSLHELCIGSYLEGCGHVQRFLSNNPMMG 129
            + EW++H TK    E L + NL  SLG+  G+     I SYL     +   + N+  M 
Sbjct: 77  AYHEWEYHTTKYK--ELLVDQNLSDSLGTTSGNSSFQRIHSYLRINRSMTDLIKNHSKMA 134

Query: 130 LYLSLDTGKFWFPAQVYCDCALV---SNVLFSYDSNTDTFKA 168
           LY+ L+TG+FWFPAQVY    L     + + +YDS T+TF+ 
Sbjct: 135 LYIFLETGRFWFPAQVYKATLLTLYCYDAIVTYDSKTNTFQT 176


>Medtr6g039460.1 | F-box plant-like protein | HC |
           chr6:14278769-14276701 | 20130731
          Length = 323

 Score =  129 bits (323), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 67/162 (41%), Positives = 99/162 (61%), Gaps = 6/162 (3%)

Query: 10  SICLLNLPELILDCILKRLSPMELIKMSEVCTCLRDACRSDHLWENLINQKWGRIINGES 69
            + LL+LP+ I+ CILKRLSP +L ++S+VC+ LR+  R D LWE  + QKW R++ G+ 
Sbjct: 18  KVSLLDLPDEIVHCILKRLSPQDLYRISQVCSRLRNISRGDCLWEKHVEQKWSRLV-GDD 76

Query: 70  TFKEWQWHLTKLNSIETLFNINLDWSLGSLCGSLHELCIGSYLEGCGHVQRFLSNNPMMG 129
            + EW++H TK    E L + NL    G++ G      + SYL+    +   + N+  M 
Sbjct: 77  AYHEWEYHTTKYK--ELLVDQNLSEPFGTISGDSPSQRLHSYLKINRTLIGLIKNHSKMA 134

Query: 130 LYLSLDTGKFWFPAQVYCDCALV---SNVLFSYDSNTDTFKA 168
           LY+ L+TG+FWFPAQVY     +    + + SYDS TDTF+A
Sbjct: 135 LYILLETGRFWFPAQVYKATLQILYCYDAIVSYDSKTDTFRA 176


>Medtr5g089110.1 | F-box plant-like protein | HC |
           chr5:38730456-38725757 | 20130731
          Length = 399

 Score =  110 bits (274), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 68/188 (36%), Positives = 102/188 (54%), Gaps = 25/188 (13%)

Query: 1   MENAEKHGNSI----CLLNLPELILDCILKRLSPMELIKMSEVCTCLRDACRSDHLWENL 56
           +EN E+  +S+     +L+LPEL+L+CIL++L P  L +M+ VC  LR+ C SDHLWE  
Sbjct: 70  VENVEEEVDSLQQNLSVLDLPELVLECILEKLPPSSLCQMAGVCHSLRERCVSDHLWERH 129

Query: 57  INQKWGRIINGESTFKEWQWHLTKLNSIETLFN---------INLDWSLGSLCGSLHELC 107
           + QKWGR+I G   ++EW+WH+    +I +L +         ++L W    +   +    
Sbjct: 130 MKQKWGRVI-GSVAYREWKWHVATKKNIGSLRHGKPRSLIKFMSLYWPFSWMRMKVD--- 185

Query: 108 IGSYLEGCGHVQRFLSNNPMMGLYLSLDTGKFWFPAQVY-CDCALVSNVL------FSYD 160
             +Y         +L  +  M  YL+L+TG F FPAQVY  +   V  +L       SYD
Sbjct: 186 -AAYSNSANKQNSYLPPDSFMTWYLALETGNFSFPAQVYNRENGHVGFMLSCYDAELSYD 244

Query: 161 SNTDTFKA 168
             TDTF+A
Sbjct: 245 PRTDTFQA 252


>Medtr3g436860.1 | F-box plant-like protein | HC |
           chr3:12403625-12408078 | 20130731
          Length = 335

 Score =  110 bits (274), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 66/185 (35%), Positives = 105/185 (56%), Gaps = 24/185 (12%)

Query: 1   MENAEKHGNSICLLNLPELILDCILKRLSPMELIKMSEVCTCLRDACRSDHLWENLINQK 60
           +EN E+  + + LL+LPELIL+CIL++L P  L +M+ +C  LR+ C SD+ WE  + +K
Sbjct: 12  VENVEEIEDKLSLLDLPELILECILEKLPPSSLCQMAGICHSLRERCVSDYFWERHMKKK 71

Query: 61  WGRIINGESTFKEWQWHLTKLNSIETLFN----------INLDWSLGSLCGSLHELCIGS 110
           WG +I G++ ++EW+WH+     + +L +           +L W    +     +L +G 
Sbjct: 72  WGGVI-GQAAYREWKWHVASNMGVGSLKHGKQSGLWMKIFSLLWPFQGM-----KLKVGD 125

Query: 111 YLEGCGHVQRFLSNNPMMGLYLSLDTGKFWFPAQVYCD-----CALVS--NVLFSYDSNT 163
             + C H +  L    +M  YL+++TG+FWFPAQVY         L+S  +   SYDS T
Sbjct: 126 GNDSCNH-RSSLPVEAVMNWYLAIETGRFWFPAQVYNRENGHLGFLLSCYDAELSYDSRT 184

Query: 164 DTFKA 168
           +TF A
Sbjct: 185 NTFLA 189


>Medtr5g089110.2 | F-box plant-like protein | HC |
           chr5:38730456-38725757 | 20130731
          Length = 347

 Score =  110 bits (274), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 68/188 (36%), Positives = 102/188 (54%), Gaps = 25/188 (13%)

Query: 1   MENAEKHGNSI----CLLNLPELILDCILKRLSPMELIKMSEVCTCLRDACRSDHLWENL 56
           +EN E+  +S+     +L+LPEL+L+CIL++L P  L +M+ VC  LR+ C SDHLWE  
Sbjct: 70  VENVEEEVDSLQQNLSVLDLPELVLECILEKLPPSSLCQMAGVCHSLRERCVSDHLWERH 129

Query: 57  INQKWGRIINGESTFKEWQWHLTKLNSIETLFN---------INLDWSLGSLCGSLHELC 107
           + QKWGR+I G   ++EW+WH+    +I +L +         ++L W    +   +    
Sbjct: 130 MKQKWGRVI-GSVAYREWKWHVATKKNIGSLRHGKPRSLIKFMSLYWPFSWMRMKVD--- 185

Query: 108 IGSYLEGCGHVQRFLSNNPMMGLYLSLDTGKFWFPAQVY-CDCALVSNVL------FSYD 160
             +Y         +L  +  M  YL+L+TG F FPAQVY  +   V  +L       SYD
Sbjct: 186 -AAYSNSANKQNSYLPPDSFMTWYLALETGNFSFPAQVYNRENGHVGFMLSCYDAELSYD 244

Query: 161 SNTDTFKA 168
             TDTF+A
Sbjct: 245 PRTDTFQA 252


>Medtr3g436860.2 | F-box plant-like protein | HC |
           chr3:12403405-12408412 | 20130731
          Length = 378

 Score =  109 bits (273), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 66/185 (35%), Positives = 105/185 (56%), Gaps = 24/185 (12%)

Query: 1   MENAEKHGNSICLLNLPELILDCILKRLSPMELIKMSEVCTCLRDACRSDHLWENLINQK 60
           +EN E+  + + LL+LPELIL+CIL++L P  L +M+ +C  LR+ C SD+ WE  + +K
Sbjct: 77  VENVEEIEDKLSLLDLPELILECILEKLPPSSLCQMAGICHSLRERCVSDYFWERHMKKK 136

Query: 61  WGRIINGESTFKEWQWHLTKLNSIETLFN----------INLDWSLGSLCGSLHELCIGS 110
           WG +I G++ ++EW+WH+     + +L +           +L W    +     +L +G 
Sbjct: 137 WGGVI-GQAAYREWKWHVASNMGVGSLKHGKQSGLWMKIFSLLWPFQGM-----KLKVGD 190

Query: 111 YLEGCGHVQRFLSNNPMMGLYLSLDTGKFWFPAQVYCD-----CALVS--NVLFSYDSNT 163
             + C H +  L    +M  YL+++TG+FWFPAQVY         L+S  +   SYDS T
Sbjct: 191 GNDSCNH-RSSLPVEAVMNWYLAIETGRFWFPAQVYNRENGHLGFLLSCYDAELSYDSRT 249

Query: 164 DTFKA 168
           +TF A
Sbjct: 250 NTFLA 254


>Medtr3g436860.3 | F-box plant-like protein | HC |
           chr3:12402988-12406347 | 20130731
          Length = 378

 Score =  109 bits (273), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 66/185 (35%), Positives = 105/185 (56%), Gaps = 24/185 (12%)

Query: 1   MENAEKHGNSICLLNLPELILDCILKRLSPMELIKMSEVCTCLRDACRSDHLWENLINQK 60
           +EN E+  + + LL+LPELIL+CIL++L P  L +M+ +C  LR+ C SD+ WE  + +K
Sbjct: 77  VENVEEIEDKLSLLDLPELILECILEKLPPSSLCQMAGICHSLRERCVSDYFWERHMKKK 136

Query: 61  WGRIINGESTFKEWQWHLTKLNSIETLFN----------INLDWSLGSLCGSLHELCIGS 110
           WG +I G++ ++EW+WH+     + +L +           +L W    +     +L +G 
Sbjct: 137 WGGVI-GQAAYREWKWHVASNMGVGSLKHGKQSGLWMKIFSLLWPFQGM-----KLKVGD 190

Query: 111 YLEGCGHVQRFLSNNPMMGLYLSLDTGKFWFPAQVYCD-----CALVS--NVLFSYDSNT 163
             + C H +  L    +M  YL+++TG+FWFPAQVY         L+S  +   SYDS T
Sbjct: 191 GNDSCNH-RSSLPVEAVMNWYLAIETGRFWFPAQVYNRENGHLGFLLSCYDAELSYDSRT 249

Query: 164 DTFKA 168
           +TF A
Sbjct: 250 NTFLA 254


>Medtr1030s0010.1 | F-box plant-like protein | HC |
           scaffold1030:2809-3176 | 20130731
          Length = 122

 Score =  103 bits (256), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 52/123 (42%), Positives = 77/123 (62%), Gaps = 3/123 (2%)

Query: 24  ILKRLSPMELIKMSEVCTCLRDACRSDHLWENLINQKWGRIINGESTFKEWQWHLTKLNS 83
           ILKRLSP +LI++S+VC+ LR+  R D +WE  + QKW R++ G+  + EW++H TK   
Sbjct: 2   ILKRLSPQDLIRLSQVCSRLRNISRGDCMWEKHVEQKWSRLV-GDDAYHEWKYHTTKCK- 59

Query: 84  IETLFNINLDWSLGSLCGSLHELCIGSYLEGCGHVQRFLSNNPMMGLYLSLDTGKFWFPA 143
            E L + NL    G++ G      + SYL+    +   + N+  M LY+ L+TG+FWFPA
Sbjct: 60  -ELLVDQNLSEPFGTISGDSPSQRLHSYLKINRTLIGLIKNHSKMALYIFLETGRFWFPA 118

Query: 144 QVY 146
           QVY
Sbjct: 119 QVY 121


>Medtr7g089640.1 | F-box plant-like protein | HC |
           chr7:35109328-35106604 | 20130731
          Length = 394

 Score = 98.2 bits (243), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 59/156 (37%), Positives = 91/156 (58%), Gaps = 16/156 (10%)

Query: 23  CILKRLSPMELIKMSEVCTCLRDACRSDHLWENLINQKWGRIINGESTFKEWQWHLTKLN 82
           CIL++LSP EL  +++VC  LR+ CRSD+LWE  +  KWG+I+ G+S +++W+ ++    
Sbjct: 100 CILEKLSPSELCNVAQVCKSLREKCRSDYLWEKHMKMKWGKIL-GDSAYRQWKCYVAS-K 157

Query: 83  SIETLFNINLDWSLGSLCGSLHELCIGSYLEGCGHVQRFLSNNP---MMGLYLSLDTGKF 139
           SIE   N N   +  ++   LH      +++     ++++ + P   +  LYLSL+ GKF
Sbjct: 158 SIEK--NSNQHKNQKTVLAFLHAFLPFFWIK--SKSEKYIKSRPDDSIAALYLSLENGKF 213

Query: 140 WFPAQVYCDCALVSNVLFS-------YDSNTDTFKA 168
           WFPAQVY      +  L S       YDS TDTF+A
Sbjct: 214 WFPAQVYNRENGHAGFLLSCYDAELCYDSRTDTFQA 249


>Medtr6g039470.1 | F-box plant-like protein | LC |
           chr6:14285062-14283530 | 20130731
          Length = 246

 Score = 74.3 bits (181), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 70/122 (57%), Gaps = 4/122 (3%)

Query: 5   EKHGN-SICLLNLPELILDCILKRLSPMELIKMSEVCTCLRDACRSDHLWENLINQKWGR 63
           E  G+  + LL+L + ++ CI+K LS  +L ++++VCT LR+  RSD+LWE  + QKW  
Sbjct: 84  ENQGDCKVSLLDLSDEVVHCIIKHLSSQDLFRIAQVCTNLRNMSRSDYLWEKHVEQKWSM 143

Query: 64  IINGESTFKEWQWHLTKLNSIETLFNINLDWSLGSLCGSLHELCIGSYLEGCGHVQRFLS 123
           ++ G   + EW++H TK   +  L + NL  S G++ G        SYL+    +  F+ 
Sbjct: 144 LV-GNDAYHEWEYHTTKYKGL--LVDQNLRRSSGTISGDSFFRRHHSYLKSNRSLIAFIK 200

Query: 124 NN 125
           N+
Sbjct: 201 NH 202