Miyakogusa Predicted Gene

Lj1g3v4118230.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4118230.1 tr|Q2HSX6|Q2HSX6_MEDTR Cyclin-like F-box
OS=Medicago truncatula GN=MTR_7g089730 PE=4
SV=1,73.21,9e-16,FBOX,F-box domain, cyclin-like; F-box,F-box domain,
cyclin-like; F-box domain,F-box domain, cyclin-l,CUFF.31986.1
         (140 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g089730.1 | F-box plant-like protein | LC | chr7:35146477-...    88   3e-18
Medtr7g089670.1 | F-box plant-like protein | HC | chr7:35123687-...    72   2e-13
Medtr5g089110.1 | F-box plant-like protein | HC | chr5:38730456-...    72   2e-13
Medtr5g089110.2 | F-box plant-like protein | HC | chr5:38730456-...    71   2e-13
Medtr7g089720.1 | F-box plant-like protein | LC | chr7:35139028-...    69   1e-12
Medtr7g089700.1 | F-box plant-like protein | LC | chr7:35131723-...    68   3e-12
Medtr3g436860.2 | F-box plant-like protein | HC | chr3:12403405-...    67   4e-12
Medtr3g436860.3 | F-box plant-like protein | HC | chr3:12402988-...    67   4e-12
Medtr3g436860.1 | F-box plant-like protein | HC | chr3:12403625-...    67   4e-12
Medtr6g039460.1 | F-box plant-like protein | HC | chr6:14278769-...    67   7e-12
Medtr7g089640.1 | F-box plant-like protein | HC | chr7:35109328-...    63   7e-11
Medtr6g039470.1 | F-box plant-like protein | LC | chr6:14285062-...    58   2e-09
Medtr1030s0010.1 | F-box plant-like protein | HC | scaffold1030:...    55   2e-08

>Medtr7g089730.1 | F-box plant-like protein | LC |
           chr7:35146477-35144993 | 20130731
          Length = 314

 Score = 88.2 bits (217), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 50/109 (45%), Positives = 63/109 (57%)

Query: 10  SICLLNLPELILDCILKRLSPMELIKMSEVCTCLRDACRSDHLWENLINQKWGRIINDTG 69
           SI LLN PE ILD IL+RLSP+ELIKMSEVC CLR+ CRSDH WE  + QKWGR+I    
Sbjct: 9   SISLLNFPESILDGILERLSPIELIKMSEVCICLRNKCRSDHFWEIHMKQKWGRVIGHVA 68

Query: 70  KFWFPAQVYCDCALVSNVLFSYDSNTDTFKARAPSWGWKVIGHGFRWEK 118
              +   V    A   +VL    +N       + S  W ++  G  +E+
Sbjct: 69  LKEWQWHVTSITAEEGSVLNQQINNIQNGSLGSFSGAWPMLCLGSYFEE 117



 Score = 82.4 bits (202), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 37/74 (50%), Positives = 50/74 (67%), Gaps = 1/74 (1%)

Query: 67  DTGKFWFPAQVYCDCALVSNVLFSYDSNTDTFKARAPSWGWKVIGHGFRWEKLRISPVED 126
           ++GKFWFPAQ++     V   L SYDS TDTF+AR  S  W+++G+   W+KLR S VE 
Sbjct: 139 ESGKFWFPAQLF-RGLYVHEALLSYDSKTDTFQARTRSGNWRIVGNKIHWDKLRPSLVET 197

Query: 127 PTCVRYFCDCLEDL 140
            +CVR+  DC +DL
Sbjct: 198 SSCVRHVSDCYQDL 211


>Medtr7g089670.1 | F-box plant-like protein | HC |
          chr7:35123687-35121860 | 20130731
          Length = 318

 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 49/68 (72%)

Query: 2  ENAEKHGNSICLLNLPELILDCILKRLSPMELIKMSEVCTCLRDACRSDHLWENLINQKW 61
          +N  +    + LL+LPE  LDCIL+ LSP++L K+++VC+CLR+  ++D+LWE  +NQ+W
Sbjct: 5  KNLIQEDRKVSLLDLPEWALDCILEYLSPLDLCKVAQVCSCLRNRSKNDYLWEKQVNQRW 64

Query: 62 GRIINDTG 69
          G ++ D  
Sbjct: 65 GELLGDIA 72



 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 32/62 (51%), Positives = 40/62 (64%), Gaps = 1/62 (1%)

Query: 64  IINDTGKFWFPAQVYCDCALVSNVLFSYDSNTDTFKARAPSWGWKVIGHGFRWEKLRISP 123
           I  +TG+FWFPAQVY       + L SYDS  DTFKAR+PS GW++ G    W+ LRI P
Sbjct: 135 IALETGQFWFPAQVYKKALSCYDALISYDSRNDTFKARSPSNGWRIRG-DVEWDMLRIPP 193

Query: 124 VE 125
            +
Sbjct: 194 PQ 195


>Medtr5g089110.1 | F-box plant-like protein | HC |
           chr5:38730456-38725757 | 20130731
          Length = 399

 Score = 71.6 bits (174), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 34/73 (46%), Positives = 49/73 (67%), Gaps = 4/73 (5%)

Query: 1   MENAEKHGNSI----CLLNLPELILDCILKRLSPMELIKMSEVCTCLRDACRSDHLWENL 56
           +EN E+  +S+     +L+LPEL+L+CIL++L P  L +M+ VC  LR+ C SDHLWE  
Sbjct: 70  VENVEEEVDSLQQNLSVLDLPELVLECILEKLPPSSLCQMAGVCHSLRERCVSDHLWERH 129

Query: 57  INQKWGRIINDTG 69
           + QKWGR+I    
Sbjct: 130 MKQKWGRVIGSVA 142



 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/83 (42%), Positives = 45/83 (54%), Gaps = 9/83 (10%)

Query: 67  DTGKFWFPAQVYC-DCALVSNVL------FSYDSNTDTFKARAPSWGWKV--IGHGFRWE 117
           +TG F FPAQVY  +   V  +L       SYD  TDTF+AR P  G +   + HG  WE
Sbjct: 212 ETGNFSFPAQVYNRENGHVGFMLSCYDAELSYDPRTDTFQARYPPHGRRAAAVEHGIPWE 271

Query: 118 KLRISPVEDPTCVRYFCDCLEDL 140
           +LR  PV+ P    +  +CL DL
Sbjct: 272 RLRAPPVDTPPHDLHITECLHDL 294


>Medtr5g089110.2 | F-box plant-like protein | HC |
           chr5:38730456-38725757 | 20130731
          Length = 347

 Score = 71.2 bits (173), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 34/73 (46%), Positives = 49/73 (67%), Gaps = 4/73 (5%)

Query: 1   MENAEKHGNSI----CLLNLPELILDCILKRLSPMELIKMSEVCTCLRDACRSDHLWENL 56
           +EN E+  +S+     +L+LPEL+L+CIL++L P  L +M+ VC  LR+ C SDHLWE  
Sbjct: 70  VENVEEEVDSLQQNLSVLDLPELVLECILEKLPPSSLCQMAGVCHSLRERCVSDHLWERH 129

Query: 57  INQKWGRIINDTG 69
           + QKWGR+I    
Sbjct: 130 MKQKWGRVIGSVA 142



 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/83 (42%), Positives = 45/83 (54%), Gaps = 9/83 (10%)

Query: 67  DTGKFWFPAQVYC-DCALVSNVL------FSYDSNTDTFKARAPSWGWKV--IGHGFRWE 117
           +TG F FPAQVY  +   V  +L       SYD  TDTF+AR P  G +   + HG  WE
Sbjct: 212 ETGNFSFPAQVYNRENGHVGFMLSCYDAELSYDPRTDTFQARYPPHGRRAAAVEHGIPWE 271

Query: 118 KLRISPVEDPTCVRYFCDCLEDL 140
           +LR  PV+ P    +  +CL DL
Sbjct: 272 RLRAPPVDTPPHDLHITECLHDL 294


>Medtr7g089720.1 | F-box plant-like protein | LC |
          chr7:35139028-35137263 | 20130731
          Length = 323

 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 31/63 (49%), Positives = 45/63 (71%), Gaps = 1/63 (1%)

Query: 11 ICLLNLPELILDCILKRLSPMELIKMSEVCTCLRDACRSDHLWENLINQKWGRII-NDTG 69
          + LL+LP+ ++DCILK LSP +L ++++VCT LR+  R DHLWE  + QKW R++ ND  
Sbjct: 19 VSLLDLPDELVDCILKFLSPQDLFRVAQVCTHLRNISRRDHLWEKHVEQKWSRLLGNDAY 78

Query: 70 KFW 72
            W
Sbjct: 79 HEW 81



 Score = 53.5 bits (127), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 35/63 (55%), Gaps = 3/63 (4%)

Query: 64  IINDTGKFWFPAQVYCDCALV---SNVLFSYDSNTDTFKARAPSWGWKVIGHGFRWEKLR 120
           I  +TG+FWFPAQVY    L     + + +YDS T+TF+ R P    +VI     W  LR
Sbjct: 137 IFLETGRFWFPAQVYKATLLTLYCYDAIVTYDSKTNTFQTRTPHGRRRVIERDIPWNMLR 196

Query: 121 ISP 123
           + P
Sbjct: 197 MPP 199


>Medtr7g089700.1 | F-box plant-like protein | LC |
          chr7:35131723-35130047 | 20130731
          Length = 324

 Score = 67.8 bits (164), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 31/63 (49%), Positives = 45/63 (71%), Gaps = 1/63 (1%)

Query: 11 ICLLNLPELILDCILKRLSPMELIKMSEVCTCLRDACRSDHLWENLINQKWGRII-NDTG 69
          + LL+LP+ ++DCILK LSP +L ++++VCT LR+  R DHLWE  + QKW R++ ND  
Sbjct: 20 VSLLDLPDELVDCILKCLSPQDLFRVAQVCTHLRNISRRDHLWEKHVEQKWSRLLGNDAY 79

Query: 70 KFW 72
            W
Sbjct: 80 HEW 82



 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 36/63 (57%), Gaps = 3/63 (4%)

Query: 64  IINDTGKFWFPAQVYCDCALV---SNVLFSYDSNTDTFKARAPSWGWKVIGHGFRWEKLR 120
           I  +TG+FWFPAQVY    L     + + SYDS TDTF+ R P    ++I     W+ LR
Sbjct: 138 IFLETGRFWFPAQVYKATLLTLHCYDAIVSYDSRTDTFQTRCPYGRKRLIERDISWDMLR 197

Query: 121 ISP 123
           + P
Sbjct: 198 MPP 200


>Medtr3g436860.2 | F-box plant-like protein | HC |
           chr3:12403405-12408412 | 20130731
          Length = 378

 Score = 67.4 bits (163), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 46/69 (66%)

Query: 1   MENAEKHGNSICLLNLPELILDCILKRLSPMELIKMSEVCTCLRDACRSDHLWENLINQK 60
           +EN E+  + + LL+LPELIL+CIL++L P  L +M+ +C  LR+ C SD+ WE  + +K
Sbjct: 77  VENVEEIEDKLSLLDLPELILECILEKLPPSSLCQMAGICHSLRERCVSDYFWERHMKKK 136

Query: 61  WGRIINDTG 69
           WG +I    
Sbjct: 137 WGGVIGQAA 145



 Score = 53.1 bits (126), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 8/82 (9%)

Query: 67  DTGKFWFPAQVYCD-----CALVS--NVLFSYDSNTDTFKARAPSWGWKVIGH-GFRWEK 118
           +TG+FWFPAQVY         L+S  +   SYDS T+TF AR PS G +     G  WE+
Sbjct: 214 ETGRFWFPAQVYNRENGHLGFLLSCYDAELSYDSRTNTFLARYPSHGRREARECGIPWER 273

Query: 119 LRISPVEDPTCVRYFCDCLEDL 140
           +R  PV+      +  +CL DL
Sbjct: 274 IRAPPVDISPHDLHISNCLNDL 295


>Medtr3g436860.3 | F-box plant-like protein | HC |
           chr3:12402988-12406347 | 20130731
          Length = 378

 Score = 67.4 bits (163), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 46/69 (66%)

Query: 1   MENAEKHGNSICLLNLPELILDCILKRLSPMELIKMSEVCTCLRDACRSDHLWENLINQK 60
           +EN E+  + + LL+LPELIL+CIL++L P  L +M+ +C  LR+ C SD+ WE  + +K
Sbjct: 77  VENVEEIEDKLSLLDLPELILECILEKLPPSSLCQMAGICHSLRERCVSDYFWERHMKKK 136

Query: 61  WGRIINDTG 69
           WG +I    
Sbjct: 137 WGGVIGQAA 145



 Score = 53.1 bits (126), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 8/82 (9%)

Query: 67  DTGKFWFPAQVYCD-----CALVS--NVLFSYDSNTDTFKARAPSWGWKVIGH-GFRWEK 118
           +TG+FWFPAQVY         L+S  +   SYDS T+TF AR PS G +     G  WE+
Sbjct: 214 ETGRFWFPAQVYNRENGHLGFLLSCYDAELSYDSRTNTFLARYPSHGRREARECGIPWER 273

Query: 119 LRISPVEDPTCVRYFCDCLEDL 140
           +R  PV+      +  +CL DL
Sbjct: 274 IRAPPVDISPHDLHISNCLNDL 295


>Medtr3g436860.1 | F-box plant-like protein | HC |
          chr3:12403625-12408078 | 20130731
          Length = 335

 Score = 67.4 bits (163), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 46/69 (66%)

Query: 1  MENAEKHGNSICLLNLPELILDCILKRLSPMELIKMSEVCTCLRDACRSDHLWENLINQK 60
          +EN E+  + + LL+LPELIL+CIL++L P  L +M+ +C  LR+ C SD+ WE  + +K
Sbjct: 12 VENVEEIEDKLSLLDLPELILECILEKLPPSSLCQMAGICHSLRERCVSDYFWERHMKKK 71

Query: 61 WGRIINDTG 69
          WG +I    
Sbjct: 72 WGGVIGQAA 80



 Score = 53.9 bits (128), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 8/82 (9%)

Query: 67  DTGKFWFPAQVYCD-----CALVS--NVLFSYDSNTDTFKARAPSWGWKVIGH-GFRWEK 118
           +TG+FWFPAQVY         L+S  +   SYDS T+TF AR PS G +     G  WE+
Sbjct: 149 ETGRFWFPAQVYNRENGHLGFLLSCYDAELSYDSRTNTFLARYPSHGRREARECGIPWER 208

Query: 119 LRISPVEDPTCVRYFCDCLEDL 140
           +R  PV+      +  +CL DL
Sbjct: 209 IRAPPVDISPHDLHISNCLNDL 230


>Medtr6g039460.1 | F-box plant-like protein | HC |
          chr6:14278769-14276701 | 20130731
          Length = 323

 Score = 66.6 bits (161), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 42/57 (73%)

Query: 11 ICLLNLPELILDCILKRLSPMELIKMSEVCTCLRDACRSDHLWENLINQKWGRIIND 67
          + LL+LP+ I+ CILKRLSP +L ++S+VC+ LR+  R D LWE  + QKW R++ D
Sbjct: 19 VSLLDLPDEIVHCILKRLSPQDLYRISQVCSRLRNISRGDCLWEKHVEQKWSRLVGD 75



 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 40/63 (63%), Gaps = 3/63 (4%)

Query: 64  IINDTGKFWFPAQVYCDCALV---SNVLFSYDSNTDTFKARAPSWGWKVIGHGFRWEKLR 120
           I+ +TG+FWFPAQVY     +    + + SYDS TDTF+AR+P+ G + I     W+ LR
Sbjct: 137 ILLETGRFWFPAQVYKATLQILYCYDAIVSYDSKTDTFRARSPNLGRQWIQGDIPWDMLR 196

Query: 121 ISP 123
           I P
Sbjct: 197 IPP 199


>Medtr7g089640.1 | F-box plant-like protein | HC |
           chr7:35109328-35106604 | 20130731
          Length = 394

 Score = 63.2 bits (152), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 33/81 (40%), Positives = 44/81 (54%), Gaps = 7/81 (8%)

Query: 67  DTGKFWFPAQVYCDCALVSNVLFS-------YDSNTDTFKARAPSWGWKVIGHGFRWEKL 119
           + GKFWFPAQVY      +  L S       YDS TDTF+AR    G        +WE+L
Sbjct: 209 ENGKFWFPAQVYNRENGHAGFLLSCYDAELCYDSRTDTFQARYSPHGRWTTEENIKWERL 268

Query: 120 RISPVEDPTCVRYFCDCLEDL 140
           R+ P++  + V +  DCL+DL
Sbjct: 269 RVPPIDSSSHVLHISDCLDDL 289



 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 24/47 (51%), Positives = 35/47 (74%)

Query: 23  CILKRLSPMELIKMSEVCTCLRDACRSDHLWENLINQKWGRIINDTG 69
           CIL++LSP EL  +++VC  LR+ CRSD+LWE  +  KWG+I+ D+ 
Sbjct: 100 CILEKLSPSELCNVAQVCKSLREKCRSDYLWEKHMKMKWGKILGDSA 146


>Medtr6g039470.1 | F-box plant-like protein | LC |
           chr6:14285062-14283530 | 20130731
          Length = 246

 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 45/70 (64%), Gaps = 2/70 (2%)

Query: 5   EKHGN-SICLLNLPELILDCILKRLSPMELIKMSEVCTCLRDACRSDHLWENLINQKWGR 63
           E  G+  + LL+L + ++ CI+K LS  +L ++++VCT LR+  RSD+LWE  + QKW  
Sbjct: 84  ENQGDCKVSLLDLSDEVVHCIIKHLSSQDLFRIAQVCTNLRNMSRSDYLWEKHVEQKWSM 143

Query: 64  II-NDTGKFW 72
           ++ ND    W
Sbjct: 144 LVGNDAYHEW 153


>Medtr1030s0010.1 | F-box plant-like protein | HC |
          scaffold1030:2809-3176 | 20130731
          Length = 122

 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 23/44 (52%), Positives = 33/44 (75%)

Query: 24 ILKRLSPMELIKMSEVCTCLRDACRSDHLWENLINQKWGRIIND 67
          ILKRLSP +LI++S+VC+ LR+  R D +WE  + QKW R++ D
Sbjct: 2  ILKRLSPQDLIRLSQVCSRLRNISRGDCMWEKHVEQKWSRLVGD 45