Miyakogusa Predicted Gene
- Lj1g3v4118230.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v4118230.1 tr|Q2HSX6|Q2HSX6_MEDTR Cyclin-like F-box
OS=Medicago truncatula GN=MTR_7g089730 PE=4
SV=1,73.21,9e-16,FBOX,F-box domain, cyclin-like; F-box,F-box domain,
cyclin-like; F-box domain,F-box domain, cyclin-l,CUFF.31986.1
(140 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr7g089730.1 | F-box plant-like protein | LC | chr7:35146477-... 88 3e-18
Medtr7g089670.1 | F-box plant-like protein | HC | chr7:35123687-... 72 2e-13
Medtr5g089110.1 | F-box plant-like protein | HC | chr5:38730456-... 72 2e-13
Medtr5g089110.2 | F-box plant-like protein | HC | chr5:38730456-... 71 2e-13
Medtr7g089720.1 | F-box plant-like protein | LC | chr7:35139028-... 69 1e-12
Medtr7g089700.1 | F-box plant-like protein | LC | chr7:35131723-... 68 3e-12
Medtr3g436860.2 | F-box plant-like protein | HC | chr3:12403405-... 67 4e-12
Medtr3g436860.3 | F-box plant-like protein | HC | chr3:12402988-... 67 4e-12
Medtr3g436860.1 | F-box plant-like protein | HC | chr3:12403625-... 67 4e-12
Medtr6g039460.1 | F-box plant-like protein | HC | chr6:14278769-... 67 7e-12
Medtr7g089640.1 | F-box plant-like protein | HC | chr7:35109328-... 63 7e-11
Medtr6g039470.1 | F-box plant-like protein | LC | chr6:14285062-... 58 2e-09
Medtr1030s0010.1 | F-box plant-like protein | HC | scaffold1030:... 55 2e-08
>Medtr7g089730.1 | F-box plant-like protein | LC |
chr7:35146477-35144993 | 20130731
Length = 314
Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/109 (45%), Positives = 63/109 (57%)
Query: 10 SICLLNLPELILDCILKRLSPMELIKMSEVCTCLRDACRSDHLWENLINQKWGRIINDTG 69
SI LLN PE ILD IL+RLSP+ELIKMSEVC CLR+ CRSDH WE + QKWGR+I
Sbjct: 9 SISLLNFPESILDGILERLSPIELIKMSEVCICLRNKCRSDHFWEIHMKQKWGRVIGHVA 68
Query: 70 KFWFPAQVYCDCALVSNVLFSYDSNTDTFKARAPSWGWKVIGHGFRWEK 118
+ V A +VL +N + S W ++ G +E+
Sbjct: 69 LKEWQWHVTSITAEEGSVLNQQINNIQNGSLGSFSGAWPMLCLGSYFEE 117
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 50/74 (67%), Gaps = 1/74 (1%)
Query: 67 DTGKFWFPAQVYCDCALVSNVLFSYDSNTDTFKARAPSWGWKVIGHGFRWEKLRISPVED 126
++GKFWFPAQ++ V L SYDS TDTF+AR S W+++G+ W+KLR S VE
Sbjct: 139 ESGKFWFPAQLF-RGLYVHEALLSYDSKTDTFQARTRSGNWRIVGNKIHWDKLRPSLVET 197
Query: 127 PTCVRYFCDCLEDL 140
+CVR+ DC +DL
Sbjct: 198 SSCVRHVSDCYQDL 211
>Medtr7g089670.1 | F-box plant-like protein | HC |
chr7:35123687-35121860 | 20130731
Length = 318
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 49/68 (72%)
Query: 2 ENAEKHGNSICLLNLPELILDCILKRLSPMELIKMSEVCTCLRDACRSDHLWENLINQKW 61
+N + + LL+LPE LDCIL+ LSP++L K+++VC+CLR+ ++D+LWE +NQ+W
Sbjct: 5 KNLIQEDRKVSLLDLPEWALDCILEYLSPLDLCKVAQVCSCLRNRSKNDYLWEKQVNQRW 64
Query: 62 GRIINDTG 69
G ++ D
Sbjct: 65 GELLGDIA 72
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 64 IINDTGKFWFPAQVYCDCALVSNVLFSYDSNTDTFKARAPSWGWKVIGHGFRWEKLRISP 123
I +TG+FWFPAQVY + L SYDS DTFKAR+PS GW++ G W+ LRI P
Sbjct: 135 IALETGQFWFPAQVYKKALSCYDALISYDSRNDTFKARSPSNGWRIRG-DVEWDMLRIPP 193
Query: 124 VE 125
+
Sbjct: 194 PQ 195
>Medtr5g089110.1 | F-box plant-like protein | HC |
chr5:38730456-38725757 | 20130731
Length = 399
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 49/73 (67%), Gaps = 4/73 (5%)
Query: 1 MENAEKHGNSI----CLLNLPELILDCILKRLSPMELIKMSEVCTCLRDACRSDHLWENL 56
+EN E+ +S+ +L+LPEL+L+CIL++L P L +M+ VC LR+ C SDHLWE
Sbjct: 70 VENVEEEVDSLQQNLSVLDLPELVLECILEKLPPSSLCQMAGVCHSLRERCVSDHLWERH 129
Query: 57 INQKWGRIINDTG 69
+ QKWGR+I
Sbjct: 130 MKQKWGRVIGSVA 142
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 45/83 (54%), Gaps = 9/83 (10%)
Query: 67 DTGKFWFPAQVYC-DCALVSNVL------FSYDSNTDTFKARAPSWGWKV--IGHGFRWE 117
+TG F FPAQVY + V +L SYD TDTF+AR P G + + HG WE
Sbjct: 212 ETGNFSFPAQVYNRENGHVGFMLSCYDAELSYDPRTDTFQARYPPHGRRAAAVEHGIPWE 271
Query: 118 KLRISPVEDPTCVRYFCDCLEDL 140
+LR PV+ P + +CL DL
Sbjct: 272 RLRAPPVDTPPHDLHITECLHDL 294
>Medtr5g089110.2 | F-box plant-like protein | HC |
chr5:38730456-38725757 | 20130731
Length = 347
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 49/73 (67%), Gaps = 4/73 (5%)
Query: 1 MENAEKHGNSI----CLLNLPELILDCILKRLSPMELIKMSEVCTCLRDACRSDHLWENL 56
+EN E+ +S+ +L+LPEL+L+CIL++L P L +M+ VC LR+ C SDHLWE
Sbjct: 70 VENVEEEVDSLQQNLSVLDLPELVLECILEKLPPSSLCQMAGVCHSLRERCVSDHLWERH 129
Query: 57 INQKWGRIINDTG 69
+ QKWGR+I
Sbjct: 130 MKQKWGRVIGSVA 142
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 45/83 (54%), Gaps = 9/83 (10%)
Query: 67 DTGKFWFPAQVYC-DCALVSNVL------FSYDSNTDTFKARAPSWGWKV--IGHGFRWE 117
+TG F FPAQVY + V +L SYD TDTF+AR P G + + HG WE
Sbjct: 212 ETGNFSFPAQVYNRENGHVGFMLSCYDAELSYDPRTDTFQARYPPHGRRAAAVEHGIPWE 271
Query: 118 KLRISPVEDPTCVRYFCDCLEDL 140
+LR PV+ P + +CL DL
Sbjct: 272 RLRAPPVDTPPHDLHITECLHDL 294
>Medtr7g089720.1 | F-box plant-like protein | LC |
chr7:35139028-35137263 | 20130731
Length = 323
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 45/63 (71%), Gaps = 1/63 (1%)
Query: 11 ICLLNLPELILDCILKRLSPMELIKMSEVCTCLRDACRSDHLWENLINQKWGRII-NDTG 69
+ LL+LP+ ++DCILK LSP +L ++++VCT LR+ R DHLWE + QKW R++ ND
Sbjct: 19 VSLLDLPDELVDCILKFLSPQDLFRVAQVCTHLRNISRRDHLWEKHVEQKWSRLLGNDAY 78
Query: 70 KFW 72
W
Sbjct: 79 HEW 81
Score = 53.5 bits (127), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 64 IINDTGKFWFPAQVYCDCALV---SNVLFSYDSNTDTFKARAPSWGWKVIGHGFRWEKLR 120
I +TG+FWFPAQVY L + + +YDS T+TF+ R P +VI W LR
Sbjct: 137 IFLETGRFWFPAQVYKATLLTLYCYDAIVTYDSKTNTFQTRTPHGRRRVIERDIPWNMLR 196
Query: 121 ISP 123
+ P
Sbjct: 197 MPP 199
>Medtr7g089700.1 | F-box plant-like protein | LC |
chr7:35131723-35130047 | 20130731
Length = 324
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 45/63 (71%), Gaps = 1/63 (1%)
Query: 11 ICLLNLPELILDCILKRLSPMELIKMSEVCTCLRDACRSDHLWENLINQKWGRII-NDTG 69
+ LL+LP+ ++DCILK LSP +L ++++VCT LR+ R DHLWE + QKW R++ ND
Sbjct: 20 VSLLDLPDELVDCILKCLSPQDLFRVAQVCTHLRNISRRDHLWEKHVEQKWSRLLGNDAY 79
Query: 70 KFW 72
W
Sbjct: 80 HEW 82
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Query: 64 IINDTGKFWFPAQVYCDCALV---SNVLFSYDSNTDTFKARAPSWGWKVIGHGFRWEKLR 120
I +TG+FWFPAQVY L + + SYDS TDTF+ R P ++I W+ LR
Sbjct: 138 IFLETGRFWFPAQVYKATLLTLHCYDAIVSYDSRTDTFQTRCPYGRKRLIERDISWDMLR 197
Query: 121 ISP 123
+ P
Sbjct: 198 MPP 200
>Medtr3g436860.2 | F-box plant-like protein | HC |
chr3:12403405-12408412 | 20130731
Length = 378
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 46/69 (66%)
Query: 1 MENAEKHGNSICLLNLPELILDCILKRLSPMELIKMSEVCTCLRDACRSDHLWENLINQK 60
+EN E+ + + LL+LPELIL+CIL++L P L +M+ +C LR+ C SD+ WE + +K
Sbjct: 77 VENVEEIEDKLSLLDLPELILECILEKLPPSSLCQMAGICHSLRERCVSDYFWERHMKKK 136
Query: 61 WGRIINDTG 69
WG +I
Sbjct: 137 WGGVIGQAA 145
Score = 53.1 bits (126), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 8/82 (9%)
Query: 67 DTGKFWFPAQVYCD-----CALVS--NVLFSYDSNTDTFKARAPSWGWKVIGH-GFRWEK 118
+TG+FWFPAQVY L+S + SYDS T+TF AR PS G + G WE+
Sbjct: 214 ETGRFWFPAQVYNRENGHLGFLLSCYDAELSYDSRTNTFLARYPSHGRREARECGIPWER 273
Query: 119 LRISPVEDPTCVRYFCDCLEDL 140
+R PV+ + +CL DL
Sbjct: 274 IRAPPVDISPHDLHISNCLNDL 295
>Medtr3g436860.3 | F-box plant-like protein | HC |
chr3:12402988-12406347 | 20130731
Length = 378
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 46/69 (66%)
Query: 1 MENAEKHGNSICLLNLPELILDCILKRLSPMELIKMSEVCTCLRDACRSDHLWENLINQK 60
+EN E+ + + LL+LPELIL+CIL++L P L +M+ +C LR+ C SD+ WE + +K
Sbjct: 77 VENVEEIEDKLSLLDLPELILECILEKLPPSSLCQMAGICHSLRERCVSDYFWERHMKKK 136
Query: 61 WGRIINDTG 69
WG +I
Sbjct: 137 WGGVIGQAA 145
Score = 53.1 bits (126), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 8/82 (9%)
Query: 67 DTGKFWFPAQVYCD-----CALVS--NVLFSYDSNTDTFKARAPSWGWKVIGH-GFRWEK 118
+TG+FWFPAQVY L+S + SYDS T+TF AR PS G + G WE+
Sbjct: 214 ETGRFWFPAQVYNRENGHLGFLLSCYDAELSYDSRTNTFLARYPSHGRREARECGIPWER 273
Query: 119 LRISPVEDPTCVRYFCDCLEDL 140
+R PV+ + +CL DL
Sbjct: 274 IRAPPVDISPHDLHISNCLNDL 295
>Medtr3g436860.1 | F-box plant-like protein | HC |
chr3:12403625-12408078 | 20130731
Length = 335
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 46/69 (66%)
Query: 1 MENAEKHGNSICLLNLPELILDCILKRLSPMELIKMSEVCTCLRDACRSDHLWENLINQK 60
+EN E+ + + LL+LPELIL+CIL++L P L +M+ +C LR+ C SD+ WE + +K
Sbjct: 12 VENVEEIEDKLSLLDLPELILECILEKLPPSSLCQMAGICHSLRERCVSDYFWERHMKKK 71
Query: 61 WGRIINDTG 69
WG +I
Sbjct: 72 WGGVIGQAA 80
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 8/82 (9%)
Query: 67 DTGKFWFPAQVYCD-----CALVS--NVLFSYDSNTDTFKARAPSWGWKVIGH-GFRWEK 118
+TG+FWFPAQVY L+S + SYDS T+TF AR PS G + G WE+
Sbjct: 149 ETGRFWFPAQVYNRENGHLGFLLSCYDAELSYDSRTNTFLARYPSHGRREARECGIPWER 208
Query: 119 LRISPVEDPTCVRYFCDCLEDL 140
+R PV+ + +CL DL
Sbjct: 209 IRAPPVDISPHDLHISNCLNDL 230
>Medtr6g039460.1 | F-box plant-like protein | HC |
chr6:14278769-14276701 | 20130731
Length = 323
Score = 66.6 bits (161), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 42/57 (73%)
Query: 11 ICLLNLPELILDCILKRLSPMELIKMSEVCTCLRDACRSDHLWENLINQKWGRIIND 67
+ LL+LP+ I+ CILKRLSP +L ++S+VC+ LR+ R D LWE + QKW R++ D
Sbjct: 19 VSLLDLPDEIVHCILKRLSPQDLYRISQVCSRLRNISRGDCLWEKHVEQKWSRLVGD 75
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 40/63 (63%), Gaps = 3/63 (4%)
Query: 64 IINDTGKFWFPAQVYCDCALV---SNVLFSYDSNTDTFKARAPSWGWKVIGHGFRWEKLR 120
I+ +TG+FWFPAQVY + + + SYDS TDTF+AR+P+ G + I W+ LR
Sbjct: 137 ILLETGRFWFPAQVYKATLQILYCYDAIVSYDSKTDTFRARSPNLGRQWIQGDIPWDMLR 196
Query: 121 ISP 123
I P
Sbjct: 197 IPP 199
>Medtr7g089640.1 | F-box plant-like protein | HC |
chr7:35109328-35106604 | 20130731
Length = 394
Score = 63.2 bits (152), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 44/81 (54%), Gaps = 7/81 (8%)
Query: 67 DTGKFWFPAQVYCDCALVSNVLFS-------YDSNTDTFKARAPSWGWKVIGHGFRWEKL 119
+ GKFWFPAQVY + L S YDS TDTF+AR G +WE+L
Sbjct: 209 ENGKFWFPAQVYNRENGHAGFLLSCYDAELCYDSRTDTFQARYSPHGRWTTEENIKWERL 268
Query: 120 RISPVEDPTCVRYFCDCLEDL 140
R+ P++ + V + DCL+DL
Sbjct: 269 RVPPIDSSSHVLHISDCLDDL 289
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 35/47 (74%)
Query: 23 CILKRLSPMELIKMSEVCTCLRDACRSDHLWENLINQKWGRIINDTG 69
CIL++LSP EL +++VC LR+ CRSD+LWE + KWG+I+ D+
Sbjct: 100 CILEKLSPSELCNVAQVCKSLREKCRSDYLWEKHMKMKWGKILGDSA 146
>Medtr6g039470.1 | F-box plant-like protein | LC |
chr6:14285062-14283530 | 20130731
Length = 246
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 45/70 (64%), Gaps = 2/70 (2%)
Query: 5 EKHGN-SICLLNLPELILDCILKRLSPMELIKMSEVCTCLRDACRSDHLWENLINQKWGR 63
E G+ + LL+L + ++ CI+K LS +L ++++VCT LR+ RSD+LWE + QKW
Sbjct: 84 ENQGDCKVSLLDLSDEVVHCIIKHLSSQDLFRIAQVCTNLRNMSRSDYLWEKHVEQKWSM 143
Query: 64 II-NDTGKFW 72
++ ND W
Sbjct: 144 LVGNDAYHEW 153
>Medtr1030s0010.1 | F-box plant-like protein | HC |
scaffold1030:2809-3176 | 20130731
Length = 122
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 33/44 (75%)
Query: 24 ILKRLSPMELIKMSEVCTCLRDACRSDHLWENLINQKWGRIIND 67
ILKRLSP +LI++S+VC+ LR+ R D +WE + QKW R++ D
Sbjct: 2 ILKRLSPQDLIRLSQVCSRLRNISRGDCMWEKHVEQKWSRLVGD 45