Miyakogusa Predicted Gene

Lj1g3v4107150.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4107150.1 Non Characterized Hit- tr|D0NK77|D0NK77_PHYIT
Putative uncharacterized protein OS=Phytophthora
infes,29.36,9e-19,Rhomboid-like,NULL; UBA-like,UBA-like;
UBA,Ubiquitin-associated/translation elongation factor EF1B,
,CUFF.31960.1
         (293 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g089550.1 | ubiquitin-associated/TS-N domain protein | HC ...   535   e-152

>Medtr7g089550.1 | ubiquitin-associated/TS-N domain protein | HC |
           chr7:35067788-35061299 | 20130731
          Length = 292

 Score =  535 bits (1378), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 257/292 (88%), Positives = 277/292 (94%)

Query: 2   INGGPSGFTNAPITRAFIVASALFTIFFGIQGRFNTLGLSYQDIFGKLRLWKLIISIFSF 61
           +NGGPSGFTNAP+TRAFI+ASALFTIFFGIQGRFNTLGLSYQDIFGKLR+WKLI+S+FSF
Sbjct: 1   MNGGPSGFTNAPVTRAFIIASALFTIFFGIQGRFNTLGLSYQDIFGKLRIWKLIMSVFSF 60

Query: 62  SSTPELMFGLYLLYYFRVFERQIGSNKYSVFIAFSVLNSLLFEAVAVALLKDPTANLVTP 121
           +STPELMFGLYLLYYFRVFERQIGSNK+SVFI FS+L SLLFE VAVALLKDP+  LVTP
Sbjct: 61  TSTPELMFGLYLLYYFRVFERQIGSNKHSVFIVFSMLTSLLFEVVAVALLKDPSTTLVTP 120

Query: 122 GPYGLIFASFVPFFFDIPVSTRYRVFGFHFSDKTFIYLAGLQLLLSSWKRSILPGMCGIL 181
           GPYGLIFASFVPFFFDIPVSTR+R+ GFHFSDK+FIYLAGLQLLLS WKRS+LPGMCGIL
Sbjct: 121 GPYGLIFASFVPFFFDIPVSTRFRICGFHFSDKSFIYLAGLQLLLSKWKRSMLPGMCGIL 180

Query: 182 AGSLYRLNVFYIRKAKIPELIASFFSRLSLPSMGSPRAPSTRNVVGNIPSYPARPVERNY 241
           AGSLYRLNVFYIRKAK PE I+SFFSR+SLPSMG+PR  STRNV+GN+PSYPAR +ERNY
Sbjct: 181 AGSLYRLNVFYIRKAKFPEFISSFFSRISLPSMGTPRTTSTRNVMGNVPSYPARQMERNY 240

Query: 242 PAPNQSAVEPSEDSIATLVSMGFDRNSARQALVQARNDVNVATNILLEAQSH 293
           PAP  SAVEPSEDSI TLVSMGFDRNSARQALVQARNDVNVATNILLEAQSH
Sbjct: 241 PAPTHSAVEPSEDSIITLVSMGFDRNSARQALVQARNDVNVATNILLEAQSH 292