Miyakogusa Predicted Gene

Lj1g3v4107040.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4107040.2 tr|F2CX46|F2CX46_HORVD Predicted protein
(Fragment) OS=Hordeum vulgare var. distichum PE=2
SV=1,44.35,3e-18,ARV1,Arv1 protein; seg,NULL; Arv1,Arv1
protein,CUFF.31951.2
         (249 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g089460.1 | Arv1, putative | HC | chr7:35022490-35018674 |...   332   1e-91

>Medtr7g089460.1 | Arv1, putative | HC | chr7:35022490-35018674 |
           20130731
          Length = 251

 Score =  332 bits (852), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 182/247 (73%), Positives = 202/247 (81%)

Query: 1   MGYTCIQCGFPIKTLYIQYSPGNIRLLKCENCKAVADEYIECEIMILVIDLLLHKPKAYR 60
           MGY CIQCGF I TLY QYSPGNIRL+KCENCKAVADEYIECEIMI+VID++LHKPKAYR
Sbjct: 1   MGYRCIQCGFTINTLYFQYSPGNIRLMKCENCKAVADEYIECEIMIIVIDIILHKPKAYR 60

Query: 61  HLLYNVINQETLKFQGLLWKSAITFLLFDAYKCLILENXXXXXXXXXXXXXXXXXWCKIL 120
           HLLYNVINQE +KFQGLLWK A+ FLLFDAY+ LILE+                  CK+L
Sbjct: 61  HLLYNVINQEAMKFQGLLWKLAVIFLLFDAYRYLILESSKGKLGSSMSYSSLVSMCCKML 120

Query: 121 IDVFFGNFMFILAFFFMIKMFLHTSISISRCNDLLLVLMISCYFKIFLVAMMVWEFPSSA 180
           IDV FGNFMF+L FFFM+KMFLH SIS+SRCND+LL L+ISCY KIFL+AM VWEFPSS 
Sbjct: 121 IDVCFGNFMFLLTFFFMVKMFLHISISVSRCNDILLGLLISCYSKIFLIAMTVWEFPSSV 180

Query: 181 IFIIELFCLSSNAVALKVMTESTMSRCVCTCLCAYATKFLVTCVPELMLLGELIQGWSHM 240
           IFIIELFCLSSNAVALKVMTES+MSRCV TC  AYA K      PEL+LLG+L+QGWS M
Sbjct: 181 IFIIELFCLSSNAVALKVMTESSMSRCVWTCFSAYAIKLFFIQAPELILLGKLMQGWSQM 240

Query: 241 PSSLSLK 247
           P +LSLK
Sbjct: 241 PFTLSLK 247