Miyakogusa Predicted Gene

Lj1g3v4107020.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4107020.1 tr|G7L5Y2|G7L5Y2_MEDTR General transcription
factor IIH subunit OS=Medicago truncatula
GN=MTR_7g0894,89.91,0,Ssl1,Ssl1-like; C1_4,TFIIH C1-like domain;
ZINC_FINGER_C2H2_1,Zinc finger, C2H2; ssl1: transcription,CUFF.31953.1
         (422 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g089440.4 | general transcription factor IIH subunit 2 | H...   726   0.0  
Medtr7g089440.3 | general transcription factor IIH subunit 2 | H...   726   0.0  
Medtr7g089440.2 | general transcription factor IIH subunit 2 | H...   726   0.0  
Medtr7g089440.1 | general transcription factor IIH subunit 2 | H...   726   0.0  

>Medtr7g089440.4 | general transcription factor IIH subunit 2 | HC |
           chr7:35013294-35008143 | 20130731
          Length = 426

 Score =  726 bits (1874), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/426 (83%), Positives = 368/426 (86%), Gaps = 4/426 (0%)

Query: 1   MNNISGRPXXXXXXXXXXXXXXXXXXXXWERTYAEDRSWESLQEDESGLLRPIDNTAIHH 60
           MNNI+G+P                    WER Y EDRSWESLQEDESGLLRPID TAIHH
Sbjct: 1   MNNIAGKPLNGDLEDDDEDEANDDGLEAWERAYTEDRSWESLQEDESGLLRPIDTTAIHH 60

Query: 61  AQYXXXXXXXXXXXXXXXIQKGLIRYLYIVVDLSKAAAETDFRPSRMAVIGRLVETFIRE 120
           AQY               IQKGLIRYLYIVVDLSKAA+E DFRPSRMAVI + VE FIRE
Sbjct: 61  AQYRRRLRALASNAATARIQKGLIRYLYIVVDLSKAASERDFRPSRMAVIAKQVELFIRE 120

Query: 121 FFDQNPLSHVGLVTIKDGVAHCLTDLGGSPESHIKALTGKLECSGDASLQNALELVVGYL 180
           FFDQNPLSHVGLVT KDGVA+CLTDLGGSPESHIKAL GKLECSGDASLQNALELV   L
Sbjct: 121 FFDQNPLSHVGLVTTKDGVANCLTDLGGSPESHIKALMGKLECSGDASLQNALELVHSNL 180

Query: 181 NQIPSYGHREVLILYSALSTCDPGDLMETIQKCRKSKIRCSVIGLAAEMFICKHICQETG 240
           NQIPSYGHREVLILYSALSTCDPGDLMETIQKC+KSKIRCSVIGLAAEMFICKH+CQETG
Sbjct: 181 NQIPSYGHREVLILYSALSTCDPGDLMETIQKCKKSKIRCSVIGLAAEMFICKHLCQETG 240

Query: 241 GTYSVALDESHFKELVLEHAPPPPAIAEYATANLIKMGFPQRAAEGSVAICTCHEEAKTG 300
           GTYSVALDESHFKEL+LEH+PPPPAIAEYATANLIKMGFPQRAAEGSVAICTCHEEAKTG
Sbjct: 241 GTYSVALDESHFKELILEHSPPPPAIAEYATANLIKMGFPQRAAEGSVAICTCHEEAKTG 300

Query: 301 GGYTCPRCKVRVCELPTECRVCGLTLISSPHLARSYHHLFPIVPFDEISPSSRNDPSHSF 360
           GGYTCPRCKVRVCELPTECRVCGLTLISSPHLARSYHHLFPIVPF EISPSS+NDP+HSF
Sbjct: 301 GGYTCPRCKVRVCELPTECRVCGLTLISSPHLARSYHHLFPIVPFAEISPSSQNDPNHSF 360

Query: 361 SNTCFGCQQSLLSQ----GNVPGISVTCPKCKQQFCLDCDIYIHESLHNCPGCESFRHST 416
            NTCFGCQQSLLSQ    GN   +SV+CPKCKQQFCLDCD+YIHESLHNCPGCESFRHS 
Sbjct: 361 PNTCFGCQQSLLSQGFGAGNKAELSVSCPKCKQQFCLDCDMYIHESLHNCPGCESFRHSK 420

Query: 417 SVTAAQ 422
           SVT AQ
Sbjct: 421 SVTIAQ 426


>Medtr7g089440.3 | general transcription factor IIH subunit 2 | HC |
           chr7:35013294-35008143 | 20130731
          Length = 426

 Score =  726 bits (1874), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/426 (83%), Positives = 368/426 (86%), Gaps = 4/426 (0%)

Query: 1   MNNISGRPXXXXXXXXXXXXXXXXXXXXWERTYAEDRSWESLQEDESGLLRPIDNTAIHH 60
           MNNI+G+P                    WER Y EDRSWESLQEDESGLLRPID TAIHH
Sbjct: 1   MNNIAGKPLNGDLEDDDEDEANDDGLEAWERAYTEDRSWESLQEDESGLLRPIDTTAIHH 60

Query: 61  AQYXXXXXXXXXXXXXXXIQKGLIRYLYIVVDLSKAAAETDFRPSRMAVIGRLVETFIRE 120
           AQY               IQKGLIRYLYIVVDLSKAA+E DFRPSRMAVI + VE FIRE
Sbjct: 61  AQYRRRLRALASNAATARIQKGLIRYLYIVVDLSKAASERDFRPSRMAVIAKQVELFIRE 120

Query: 121 FFDQNPLSHVGLVTIKDGVAHCLTDLGGSPESHIKALTGKLECSGDASLQNALELVVGYL 180
           FFDQNPLSHVGLVT KDGVA+CLTDLGGSPESHIKAL GKLECSGDASLQNALELV   L
Sbjct: 121 FFDQNPLSHVGLVTTKDGVANCLTDLGGSPESHIKALMGKLECSGDASLQNALELVHSNL 180

Query: 181 NQIPSYGHREVLILYSALSTCDPGDLMETIQKCRKSKIRCSVIGLAAEMFICKHICQETG 240
           NQIPSYGHREVLILYSALSTCDPGDLMETIQKC+KSKIRCSVIGLAAEMFICKH+CQETG
Sbjct: 181 NQIPSYGHREVLILYSALSTCDPGDLMETIQKCKKSKIRCSVIGLAAEMFICKHLCQETG 240

Query: 241 GTYSVALDESHFKELVLEHAPPPPAIAEYATANLIKMGFPQRAAEGSVAICTCHEEAKTG 300
           GTYSVALDESHFKEL+LEH+PPPPAIAEYATANLIKMGFPQRAAEGSVAICTCHEEAKTG
Sbjct: 241 GTYSVALDESHFKELILEHSPPPPAIAEYATANLIKMGFPQRAAEGSVAICTCHEEAKTG 300

Query: 301 GGYTCPRCKVRVCELPTECRVCGLTLISSPHLARSYHHLFPIVPFDEISPSSRNDPSHSF 360
           GGYTCPRCKVRVCELPTECRVCGLTLISSPHLARSYHHLFPIVPF EISPSS+NDP+HSF
Sbjct: 301 GGYTCPRCKVRVCELPTECRVCGLTLISSPHLARSYHHLFPIVPFAEISPSSQNDPNHSF 360

Query: 361 SNTCFGCQQSLLSQ----GNVPGISVTCPKCKQQFCLDCDIYIHESLHNCPGCESFRHST 416
            NTCFGCQQSLLSQ    GN   +SV+CPKCKQQFCLDCD+YIHESLHNCPGCESFRHS 
Sbjct: 361 PNTCFGCQQSLLSQGFGAGNKAELSVSCPKCKQQFCLDCDMYIHESLHNCPGCESFRHSK 420

Query: 417 SVTAAQ 422
           SVT AQ
Sbjct: 421 SVTIAQ 426


>Medtr7g089440.2 | general transcription factor IIH subunit 2 | HC |
           chr7:35012998-35008143 | 20130731
          Length = 426

 Score =  726 bits (1874), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/426 (83%), Positives = 368/426 (86%), Gaps = 4/426 (0%)

Query: 1   MNNISGRPXXXXXXXXXXXXXXXXXXXXWERTYAEDRSWESLQEDESGLLRPIDNTAIHH 60
           MNNI+G+P                    WER Y EDRSWESLQEDESGLLRPID TAIHH
Sbjct: 1   MNNIAGKPLNGDLEDDDEDEANDDGLEAWERAYTEDRSWESLQEDESGLLRPIDTTAIHH 60

Query: 61  AQYXXXXXXXXXXXXXXXIQKGLIRYLYIVVDLSKAAAETDFRPSRMAVIGRLVETFIRE 120
           AQY               IQKGLIRYLYIVVDLSKAA+E DFRPSRMAVI + VE FIRE
Sbjct: 61  AQYRRRLRALASNAATARIQKGLIRYLYIVVDLSKAASERDFRPSRMAVIAKQVELFIRE 120

Query: 121 FFDQNPLSHVGLVTIKDGVAHCLTDLGGSPESHIKALTGKLECSGDASLQNALELVVGYL 180
           FFDQNPLSHVGLVT KDGVA+CLTDLGGSPESHIKAL GKLECSGDASLQNALELV   L
Sbjct: 121 FFDQNPLSHVGLVTTKDGVANCLTDLGGSPESHIKALMGKLECSGDASLQNALELVHSNL 180

Query: 181 NQIPSYGHREVLILYSALSTCDPGDLMETIQKCRKSKIRCSVIGLAAEMFICKHICQETG 240
           NQIPSYGHREVLILYSALSTCDPGDLMETIQKC+KSKIRCSVIGLAAEMFICKH+CQETG
Sbjct: 181 NQIPSYGHREVLILYSALSTCDPGDLMETIQKCKKSKIRCSVIGLAAEMFICKHLCQETG 240

Query: 241 GTYSVALDESHFKELVLEHAPPPPAIAEYATANLIKMGFPQRAAEGSVAICTCHEEAKTG 300
           GTYSVALDESHFKEL+LEH+PPPPAIAEYATANLIKMGFPQRAAEGSVAICTCHEEAKTG
Sbjct: 241 GTYSVALDESHFKELILEHSPPPPAIAEYATANLIKMGFPQRAAEGSVAICTCHEEAKTG 300

Query: 301 GGYTCPRCKVRVCELPTECRVCGLTLISSPHLARSYHHLFPIVPFDEISPSSRNDPSHSF 360
           GGYTCPRCKVRVCELPTECRVCGLTLISSPHLARSYHHLFPIVPF EISPSS+NDP+HSF
Sbjct: 301 GGYTCPRCKVRVCELPTECRVCGLTLISSPHLARSYHHLFPIVPFAEISPSSQNDPNHSF 360

Query: 361 SNTCFGCQQSLLSQ----GNVPGISVTCPKCKQQFCLDCDIYIHESLHNCPGCESFRHST 416
            NTCFGCQQSLLSQ    GN   +SV+CPKCKQQFCLDCD+YIHESLHNCPGCESFRHS 
Sbjct: 361 PNTCFGCQQSLLSQGFGAGNKAELSVSCPKCKQQFCLDCDMYIHESLHNCPGCESFRHSK 420

Query: 417 SVTAAQ 422
           SVT AQ
Sbjct: 421 SVTIAQ 426


>Medtr7g089440.1 | general transcription factor IIH subunit 2 | HC |
           chr7:35013294-35008143 | 20130731
          Length = 426

 Score =  726 bits (1874), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/426 (83%), Positives = 368/426 (86%), Gaps = 4/426 (0%)

Query: 1   MNNISGRPXXXXXXXXXXXXXXXXXXXXWERTYAEDRSWESLQEDESGLLRPIDNTAIHH 60
           MNNI+G+P                    WER Y EDRSWESLQEDESGLLRPID TAIHH
Sbjct: 1   MNNIAGKPLNGDLEDDDEDEANDDGLEAWERAYTEDRSWESLQEDESGLLRPIDTTAIHH 60

Query: 61  AQYXXXXXXXXXXXXXXXIQKGLIRYLYIVVDLSKAAAETDFRPSRMAVIGRLVETFIRE 120
           AQY               IQKGLIRYLYIVVDLSKAA+E DFRPSRMAVI + VE FIRE
Sbjct: 61  AQYRRRLRALASNAATARIQKGLIRYLYIVVDLSKAASERDFRPSRMAVIAKQVELFIRE 120

Query: 121 FFDQNPLSHVGLVTIKDGVAHCLTDLGGSPESHIKALTGKLECSGDASLQNALELVVGYL 180
           FFDQNPLSHVGLVT KDGVA+CLTDLGGSPESHIKAL GKLECSGDASLQNALELV   L
Sbjct: 121 FFDQNPLSHVGLVTTKDGVANCLTDLGGSPESHIKALMGKLECSGDASLQNALELVHSNL 180

Query: 181 NQIPSYGHREVLILYSALSTCDPGDLMETIQKCRKSKIRCSVIGLAAEMFICKHICQETG 240
           NQIPSYGHREVLILYSALSTCDPGDLMETIQKC+KSKIRCSVIGLAAEMFICKH+CQETG
Sbjct: 181 NQIPSYGHREVLILYSALSTCDPGDLMETIQKCKKSKIRCSVIGLAAEMFICKHLCQETG 240

Query: 241 GTYSVALDESHFKELVLEHAPPPPAIAEYATANLIKMGFPQRAAEGSVAICTCHEEAKTG 300
           GTYSVALDESHFKEL+LEH+PPPPAIAEYATANLIKMGFPQRAAEGSVAICTCHEEAKTG
Sbjct: 241 GTYSVALDESHFKELILEHSPPPPAIAEYATANLIKMGFPQRAAEGSVAICTCHEEAKTG 300

Query: 301 GGYTCPRCKVRVCELPTECRVCGLTLISSPHLARSYHHLFPIVPFDEISPSSRNDPSHSF 360
           GGYTCPRCKVRVCELPTECRVCGLTLISSPHLARSYHHLFPIVPF EISPSS+NDP+HSF
Sbjct: 301 GGYTCPRCKVRVCELPTECRVCGLTLISSPHLARSYHHLFPIVPFAEISPSSQNDPNHSF 360

Query: 361 SNTCFGCQQSLLSQ----GNVPGISVTCPKCKQQFCLDCDIYIHESLHNCPGCESFRHST 416
            NTCFGCQQSLLSQ    GN   +SV+CPKCKQQFCLDCD+YIHESLHNCPGCESFRHS 
Sbjct: 361 PNTCFGCQQSLLSQGFGAGNKAELSVSCPKCKQQFCLDCDMYIHESLHNCPGCESFRHSK 420

Query: 417 SVTAAQ 422
           SVT AQ
Sbjct: 421 SVTIAQ 426