Miyakogusa Predicted Gene

Lj1g3v4106950.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4106950.2 Non Characterized Hit- tr|G7KPM2|G7KPM2_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,45.74,0,seg,NULL; DUF659,Domain of unknown function DUF659;
Dimer_Tnp_hAT,HAT dimerisation; SUBFAMILY NOT NA,CUFF.31940.2
         (735 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g028350.1 | hypothetical protein | LC | chr3:8989418-89888...    80   1e-14
Medtr7g105550.1 | hypothetical protein | HC | chr7:42807417-4280...    71   5e-12

>Medtr3g028350.1 | hypothetical protein | LC | chr3:8989418-8988833
           | 20130731
          Length = 139

 Score = 79.7 bits (195), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/111 (39%), Positives = 58/111 (52%), Gaps = 25/111 (22%)

Query: 398 KSSQFAKTKDGKFIENLVVDGRLWKNIGICLRAARPRLKVLRLVNLDEKPAMCFIYEEMH 457
           K     K  + K ++N+++D   WK+I ICLR  +             KPAM FIYE M 
Sbjct: 21  KHGCLLKKWERKALKNMILDKVFWKDIVICLRGIK-------------KPAMRFIYEAMD 67

Query: 458 QAKEKIQKSFNGVKKRYMPLWDIIDERWDNQLHMPLRAAGYYLNLQIHYSP 508
           QAK+            Y P+ +IID+RWD   H PL  A YYLN Q+HY+P
Sbjct: 68  QAKD------------YKPILNIIDDRWDKIFHRPLHVAAYYLNPQLHYAP 106


>Medtr7g105550.1 | hypothetical protein | HC |
           chr7:42807417-42807019 | 20130731
          Length = 96

 Score = 70.9 bits (172), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 34/64 (53%), Positives = 41/64 (64%)

Query: 368 MTRFATSYLTLGCLNDKKGALVKMFTCKEWKSSQFAKTKDGKFIENLVVDGRLWKNIGIC 427
           MTRFA SYL L CL+    AL+ MFT KEWKS + AK+KDG  +E  V D   WKN+  C
Sbjct: 1   MTRFAASYLILECLHYNYRALIIMFTLKEWKSGKLAKSKDGIIVEKAVKDNVFWKNVMNC 60

Query: 428 LRAA 431
           +R  
Sbjct: 61  MRGV 64