Miyakogusa Predicted Gene

Lj1g3v4093200.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4093200.1 tr|D7MMT8|D7MMT8_ARALL Predicted protein
(Fragment) OS=Arabidopsis lyrata subsp. lyrata
GN=ARALYDRAF,67.16,1e-18,R3H DOMAIN CONTAINING PROTEIN,R3H
domain-containing protein, viridiplantae; CAMP-REGULATED
PHOSPHOPR,CUFF.31981.1
         (364 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g088990.1 | single-stranded nucleic acid-binding protein R...   544   e-155
Medtr1g092910.1 | single-stranded nucleic acid-binding protein R...   179   4e-45
Medtr1g092910.2 | single-stranded nucleic acid-binding protein R...   179   4e-45
Medtr1g092900.1 | single-stranded nucleic acid-binding protein R...   173   2e-43
Medtr1g092910.3 | single-stranded nucleic acid-binding protein R...   142   4e-34

>Medtr7g088990.1 | single-stranded nucleic acid-binding protein R3H
           | HC | chr7:34752150-34756924 | 20130731
          Length = 353

 Score =  544 bits (1402), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 276/353 (78%), Positives = 296/353 (83%), Gaps = 3/353 (0%)

Query: 12  TCVPNDAAASGFKDKESMVDPFLVEALQNPRHRLTILRMELDIQSFMNNADQQHFEFQHF 71
           + V N+  ASGF  KESMVDPFLVEALQNPRHRLTILRMELDIQ FMNNADQQHFEFQHF
Sbjct: 4   SLVSNNDVASGFV-KESMVDPFLVEALQNPRHRLTILRMELDIQKFMNNADQQHFEFQHF 62

Query: 72  PSSYLRLAAHRVAQHYGMQTMVQDCGLDGQGSKILVRKLPESKYPAVCLSEIPAKQVEND 131
           PSSYLRLAAHRVAQHYGMQTMVQD GLDGQ SKILVRKLPESKYP V LSEIPAKQ++N+
Sbjct: 63  PSSYLRLAAHRVAQHYGMQTMVQDIGLDGQ-SKILVRKLPESKYPVVRLSEIPAKQLDNE 121

Query: 132 KCFQKKIVIRPRPGKAGLNDGNGSGVKGNHLRSVEERKEEYDRARARIFSGSRSSDSGDT 191
           K   KKIVI+ RP K  LN  N S  KGN LRSVEERKEEYDRARARIF+GS S DS DT
Sbjct: 122 KSELKKIVIQSRPHKTSLNGANDSTKKGNPLRSVEERKEEYDRARARIFNGSTSFDSVDT 181

Query: 192 LSVVPMDGQSSFMSRDEYETRKNPMADSERIMSVKDANATRVAIFRDREKDRSDPDYDRS 251
            S+VP DG++SFMS+DE E  K PMADSER  SV+D +  RVAI RDREKDRSDPDYDRS
Sbjct: 182 SSMVPTDGKNSFMSKDESEISKIPMADSERFFSVRDNSYPRVAIIRDREKDRSDPDYDRS 241

Query: 252 YGRYARSMSMPAVNLVPFNVQITQPSFAQYDTTFNQLVQMPPTQASLGYIPPSSPIMSPF 311
           YGRYARS+S  AVNLVPFN+   QPSFA Y+TTFNQL QMP  QASLGY PPS+P+MSPF
Sbjct: 242 YGRYARSLSASAVNLVPFNLPKAQPSFAPYETTFNQLGQMPQAQASLGYGPPSTPMMSPF 301

Query: 312 CNGGLNQTPRDPAYLQWPSPTIMYAHSYDQFRHAVYQAPFGQQPLSFDYSQNY 364
           C  GLN    D AYLQWPSPT+MYAHSYDQFRHAVYQ+PFG QPLSFDYSQNY
Sbjct: 302 CTPGLNPASGDGAYLQWPSPTMMYAHSYDQFRHAVYQSPFG-QPLSFDYSQNY 353


>Medtr1g092910.1 | single-stranded nucleic acid-binding protein R3H
           | HC | chr1:41843309-41848152 | 20130731
          Length = 435

 Score =  179 bits (454), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 146/407 (35%), Positives = 204/407 (50%), Gaps = 73/407 (17%)

Query: 14  VPNDAAASGFKDKESMVDPFLVEALQNPRHRLTILRMELDIQSFMNNADQQHFEFQHFPS 73
            P   ++SG  D  + VD FL++A+QNPR RL+ILR+E D+  F+ + +QQ  EFQ  P+
Sbjct: 32  APIPPSSSGGDDAINQVDQFLLDAIQNPRQRLSILRLEQDVVKFIQDPNQQQLEFQQLPT 91

Query: 74  SYLRLAAHRVAQHYGMQTMV-QDCGL-DGQGSKILVRKLPESKYPAVCLSEIPAKQVEND 131
           SYLRLAAHRVAQHY +Q+MV  D  L D  GS+I+V K    K P + L++IP K + ++
Sbjct: 92  SYLRLAAHRVAQHYSLQSMVLLDYSLPDDSGSQIIVHKTSGCKPPLIRLADIPVK-LPSE 150

Query: 132 KCFQKKIVIRPRPGK--AGLNDGNGSGVKGNHLRSVEERKEEYDRARARIFSGSRSSDSG 189
               KKI I+ RP K   G +D + + VK  + +SVEER EEY RARARIFS   SSD+ 
Sbjct: 151 NNTVKKIAIKQRPKKQSLGCSDTDSNSVKNQNSKSVEERTEEYSRARARIFS---SSDND 207

Query: 190 DTLSVVP------MDGQ---SSFMSRDEYETRKNPMADSERIMSVKDAN----------- 229
            TL   P       D     S  +SR E ++       S R++     N           
Sbjct: 208 GTLGGKPECESRKQDNSLVGSLDVSRVEGKSASVSDVSSSRLLVESSTNNSRARSRTETE 267

Query: 230 -------ATRVAIFRDREKDRSDPDYDRSYGRYARSMSMP-AVNLVPFNVQITQPSFAQY 281
                  ++RVAIFRD E DR DPDY+R+Y R+ +        N   + +Q    + + Y
Sbjct: 268 LVGGQRQSSRVAIFRDHEVDRKDPDYNRNYERFVQRFDPGFGFNGGSYTMQPMYATVSNY 327

Query: 282 DTTFNQL-----VQM------------------PPTQASLGYIPPSSPIMSPFCNGGLNQ 318
            T F QL     +Q+                  PPT A +GY  P +  M PF       
Sbjct: 328 HTGFQQLGSTHGLQLSAEHHPQPFLQHVPGPWAPPTPAGIGYGYPET--MLPF------- 378

Query: 319 TPRDPAYLQWPSPTIMYAHSYDQFRHAVYQAPF-GQQPLSFDYSQNY 364
            PR       P+   +Y HS  Q+    +  PF   +PL   ++Q++
Sbjct: 379 NPRQVGVCSAPT---LYLHS-PQYSCHCHGMPFIPHEPLHQPFAQSH 421


>Medtr1g092910.2 | single-stranded nucleic acid-binding protein R3H
           | HC | chr1:41843337-41848152 | 20130731
          Length = 435

 Score =  179 bits (454), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 146/407 (35%), Positives = 204/407 (50%), Gaps = 73/407 (17%)

Query: 14  VPNDAAASGFKDKESMVDPFLVEALQNPRHRLTILRMELDIQSFMNNADQQHFEFQHFPS 73
            P   ++SG  D  + VD FL++A+QNPR RL+ILR+E D+  F+ + +QQ  EFQ  P+
Sbjct: 32  APIPPSSSGGDDAINQVDQFLLDAIQNPRQRLSILRLEQDVVKFIQDPNQQQLEFQQLPT 91

Query: 74  SYLRLAAHRVAQHYGMQTMV-QDCGL-DGQGSKILVRKLPESKYPAVCLSEIPAKQVEND 131
           SYLRLAAHRVAQHY +Q+MV  D  L D  GS+I+V K    K P + L++IP K + ++
Sbjct: 92  SYLRLAAHRVAQHYSLQSMVLLDYSLPDDSGSQIIVHKTSGCKPPLIRLADIPVK-LPSE 150

Query: 132 KCFQKKIVIRPRPGK--AGLNDGNGSGVKGNHLRSVEERKEEYDRARARIFSGSRSSDSG 189
               KKI I+ RP K   G +D + + VK  + +SVEER EEY RARARIFS   SSD+ 
Sbjct: 151 NNTVKKIAIKQRPKKQSLGCSDTDSNSVKNQNSKSVEERTEEYSRARARIFS---SSDND 207

Query: 190 DTLSVVP------MDGQ---SSFMSRDEYETRKNPMADSERIMSVKDAN----------- 229
            TL   P       D     S  +SR E ++       S R++     N           
Sbjct: 208 GTLGGKPECESRKQDNSLVGSLDVSRVEGKSASVSDVSSSRLLVESSTNNSRARSRTETE 267

Query: 230 -------ATRVAIFRDREKDRSDPDYDRSYGRYARSMSMP-AVNLVPFNVQITQPSFAQY 281
                  ++RVAIFRD E DR DPDY+R+Y R+ +        N   + +Q    + + Y
Sbjct: 268 LVGGQRQSSRVAIFRDHEVDRKDPDYNRNYERFVQRFDPGFGFNGGSYTMQPMYATVSNY 327

Query: 282 DTTFNQL-----VQM------------------PPTQASLGYIPPSSPIMSPFCNGGLNQ 318
            T F QL     +Q+                  PPT A +GY  P +  M PF       
Sbjct: 328 HTGFQQLGSTHGLQLSAEHHPQPFLQHVPGPWAPPTPAGIGYGYPET--MLPF------- 378

Query: 319 TPRDPAYLQWPSPTIMYAHSYDQFRHAVYQAPF-GQQPLSFDYSQNY 364
            PR       P+   +Y HS  Q+    +  PF   +PL   ++Q++
Sbjct: 379 NPRQVGVCSAPT---LYLHS-PQYSCHCHGMPFIPHEPLHQPFAQSH 421


>Medtr1g092900.1 | single-stranded nucleic acid-binding protein R3H
           | HC | chr1:41836624-41841551 | 20130731
          Length = 507

 Score =  173 bits (439), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 138/410 (33%), Positives = 186/410 (45%), Gaps = 101/410 (24%)

Query: 25  DKESMVDPFLVEALQNPRHRLTILRMELDIQSFMNNADQQHFEFQHFPSSYLRLAAHRVA 84
           D  + VD FL EA+QNPR RL+ILR+E D+ +F+ +  QQ  EF   P+SYLRLAAHRVA
Sbjct: 63  DAVNQVDQFLREAIQNPRERLSILRIEQDVLNFIKDPHQQQLEFNQLPTSYLRLAAHRVA 122

Query: 85  QHYGMQTMV-QDCGL--DGQGSKILVRKLPESKYPAVCLSEIPAK-QVENDKCFQKKIVI 140
           QHY +Q+MV QD     DG GS+I+V K  E K P + L++IP K   EN+     K+ I
Sbjct: 123 QHYSLQSMVLQDNNSLPDGSGSRIIVSKTAECKRPVIRLADIPVKLPSENNAVM--KVAI 180

Query: 141 RPRPGKAGLNDGNGSGVKG--NHLRSVEERKEEYDRARARIFSGSRSSDSGDTLSVVP-- 196
           +PRP K     GN +   G  N  +SVEERKEEY+RARARIF+   SS++G T+   P  
Sbjct: 181 KPRPQKQTQTFGNANSNSGKKNSSKSVEERKEEYNRARARIFN---SSNNGGTVGGKPEC 237

Query: 197 ---------------------------------MDGQSSFMSRDEYETRKNP-------M 216
                                            M G S++ +R   E+  N         
Sbjct: 238 ETRQQDNSLHGSSLFTRVEDKYASVSDVSSSRGMVGSSTYTNRGLVESSTNTSRGLVEFS 297

Query: 217 ADSERIMSVKDANATR-----------------------------VAIFRDREKDRSDPD 247
            ++ R +    AN +R                             VAIFRDRE DR DPD
Sbjct: 298 TNTSRGLVESSANTSRGLVESSTNTSRARNRTEKEPVGRYRQSNRVAIFRDREIDRKDPD 357

Query: 248 YDRSYGRYARSMSMP-AVNLVPFNVQITQPSFAQYDTTFNQL------------------ 288
           YDRSY RY +        N   + +Q        Y+T F QL                  
Sbjct: 358 YDRSYDRYMQRFDPGFGFNGGSYPMQPMYAPIVNYNTEFPQLGSPHGPQRSAEHQPRPLP 417

Query: 289 VQMPPTQASLGYIPPSSPIMSPFCNGGLNQTPRDPAYLQWPSPTIMYAHS 338
             +     S  ++P S+P    + +     +P +P  +   S + MY HS
Sbjct: 418 QHISGQHISGTWVPQSTPAGIGYGHPETMMSPFNPNQVGIHSSSTMYLHS 467


>Medtr1g092910.3 | single-stranded nucleic acid-binding protein R3H
           | HC | chr1:41843337-41848136 | 20130731
          Length = 399

 Score =  142 bits (359), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 127/369 (34%), Positives = 178/369 (48%), Gaps = 75/369 (20%)

Query: 53  DIQSFMNNADQQHFEFQHFPSSYLRLAAHRVAQHYGMQTMV-QDCGL-DGQGSKILVRKL 110
           D+  F+ + +QQ  EFQ  P+SYLRLAAHRVAQHY +Q+MV  D  L D  GS+I+V K 
Sbjct: 35  DVVKFIQDPNQQQLEFQQLPTSYLRLAAHRVAQHYSLQSMVLLDYSLPDDSGSQIIVHKT 94

Query: 111 PESKYPAVCLSEIPAKQVENDKCFQKKIVIRPRPGK--AGLNDGNGSGVKGNHLRSVEER 168
              K P + L++IP K + ++    KKI I+ RP K   G +D + + VK  + +SVEER
Sbjct: 95  SGCKPPLIRLADIPVK-LPSENNTVKKIAIKQRPKKQSLGCSDTDSNSVKNQNSKSVEER 153

Query: 169 KEEYDRARARIFSGSRSSDSGDTLSVVP----------MDGQSSFMSRDEYETRKNPMAD 218
            EEY RARARIFS   SSD+  TL   P          + G S  +SR E ++       
Sbjct: 154 TEEYSRARARIFS---SSDNDGTLGGKPECESRKQDNSLVG-SLDVSRVEGKSASVSDVS 209

Query: 219 SERIMSVKDAN------------------ATRVAIFRDREKDRSDPDYDRSYGRYARSMS 260
           S R++     N                  ++RVAIFRD E DR DPDY+R+Y R+ +   
Sbjct: 210 SSRLLVESSTNNSRARSRTETELVGGQRQSSRVAIFRDHEVDRKDPDYNRNYERFVQRFD 269

Query: 261 MP-AVNLVPFNVQITQPSFAQYDTTFNQL-----VQM------------------PPTQA 296
                N   + +Q    + + Y T F QL     +Q+                  PPT A
Sbjct: 270 PGFGFNGGSYTMQPMYATVSNYHTGFQQLGSTHGLQLSAEHHPQPFLQHVPGPWAPPTPA 329

Query: 297 SLGYIPPSSPIMSPFCNGGLNQTPRDPAYLQWPSPTIMYAHSYDQFRHAVYQAPF-GQQP 355
            +GY  P +  M PF        PR       P+   +Y HS  Q+    +  PF   +P
Sbjct: 330 GIGYGYPET--MLPF-------NPRQVGVCSAPT---LYLHS-PQYSCHCHGMPFIPHEP 376

Query: 356 LSFDYSQNY 364
           L   ++Q++
Sbjct: 377 LHQPFAQSH 385