Miyakogusa Predicted Gene

Lj1g3v4083160.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4083160.1 tr|A9S9W5|A9S9W5_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_182654,34.01,9e-16,no description,Mog1/PsbP,
alpha/beta/alpha sandwich; PsbP,Photosystem II PsbP, oxygen evolving
compl,CUFF.31882.1
         (255 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g088880.1 | thylakoid lumenal 29.8 kDa protein | HC | chr7...   387   e-108
Medtr3g089890.1 | thylakoid lumenal 29.8 kDa protein | HC | chr3...    77   2e-14

>Medtr7g088880.1 | thylakoid lumenal 29.8 kDa protein | HC |
           chr7:34696408-34698124 | 20130731
          Length = 259

 Score =  387 bits (994), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 195/237 (82%), Positives = 209/237 (88%), Gaps = 12/237 (5%)

Query: 19  KLSPVRTFRASASSDSVPATRSYQLIPPRREFLKGIALGALPLVLLRETPPPAEARDVEV 78
           KLS  R F  ++SS SVP          RREFLKGIAL +LPL+ L E PP ++AR+V V
Sbjct: 22  KLSHFRAFIKASSSISVP----------RREFLKGIAL-SLPLIALTE-PPQSQAREVSV 69

Query: 79  GSFLPPSPADPSFVLFKASPKDTPALRAGNVQPYQFILPPTWKQTRIANILSGNYCQPKC 138
           GSFLPPS +DPSFVLFKASPKDTPALRAGNVQPYQFILPPTWKQ RIANILSGNYCQPKC
Sbjct: 70  GSFLPPSSSDPSFVLFKASPKDTPALRAGNVQPYQFILPPTWKQLRIANILSGNYCQPKC 129

Query: 139 AEPWVEVKFEDEKQGKVQVVASPLIRLTNKPNATIEDIGSPDKVIASLGPFVTGSTYDPD 198
           AEPWVEVKFEDEKQGK+QVVASPLIRLTNKPNATIEDIGSP+K+IASLGPFVTG+T DPD
Sbjct: 130 AEPWVEVKFEDEKQGKIQVVASPLIRLTNKPNATIEDIGSPEKLIASLGPFVTGNTLDPD 189

Query: 199 ELIETSVEKLGDQTYYKYALETPYALTGSHNLAKATAKGNTVVLFVASANDKQWQTS 255
           EL+E SVEK+ DQTYYKY LETPYALTGSHNLAKATAKGNTVVLFVASANDKQWQTS
Sbjct: 190 ELLEASVEKIDDQTYYKYVLETPYALTGSHNLAKATAKGNTVVLFVASANDKQWQTS 246


>Medtr3g089890.1 | thylakoid lumenal 29.8 kDa protein | HC |
           chr3:40860391-40857329 | 20130731
          Length = 268

 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/243 (28%), Positives = 113/243 (46%), Gaps = 36/243 (14%)

Query: 24  RTFRASASSDSVP----ATRSYQLIPPRREFL-KGIALGALPLVLLRETPPPAEARDVEV 78
           RT  AS S DS+     + +   L+  RR  L  G++L   P V L      A  +   +
Sbjct: 33  RTMHASVSIDSLSINEESDKCSSLLANRRAILASGVSLLGFPGVSL------AVVKQGLL 86

Query: 79  GSFLP--PSPADPSFVLFKASPKDTPALRAGN--VQPYQFILPPTWKQT--RIANILSGN 132
              +P    P +  +  ++   + +     G   + PY F +P  W++    IA+ L G 
Sbjct: 87  AGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPYTFKVPQEWEEVPVSIAD-LGGT 145

Query: 133 YCQPKCAEPWVEVKFEDEKQGKVQVVASPLIRLTN--KPNATIEDIGSPDKVIASLGPFV 190
                     ++++F   K+G++ V+ +P++R ++    +ATIE IG PDKVI++ GP +
Sbjct: 146 E---------LDLRFSSSKEGRLFVIVAPVLRFSDIIGDDATIEKIGPPDKVISAFGPEM 196

Query: 191 TGSTYDPDELIETSVEKLGDQTYYKYALETPYALTGSHNLAKATAKGNTVVLFVASANDK 250
            G   +   L     E  G +TYY++ LE P      H    ATA GN + LF  + N  
Sbjct: 197 IGENVEGKVLSSNVAEHEG-RTYYQFELEPP------HIFITATAAGNRLYLFGVTGNGL 249

Query: 251 QWQ 253
           QW+
Sbjct: 250 QWK 252