Miyakogusa Predicted Gene

Lj1g3v4081820.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4081820.1 Non Characterized Hit- tr|D8RR13|D8RR13_SELML
Putative uncharacterized protein OS=Selaginella
moelle,29.77,2e-17,seg,NULL; SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL,CUFF.31853.1
         (515 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g088720.1 | zinc finger (C3HC4-type RING finger) family pr...   422   e-118
Medtr2g438510.1 | transmembrane protein, putative | HC | chr2:15...   184   2e-46

>Medtr7g088720.1 | zinc finger (C3HC4-type RING finger) family
           protein, putative | HC | chr7:34599583-34604643 |
           20130731
          Length = 512

 Score =  422 bits (1084), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 223/323 (69%), Positives = 251/323 (77%), Gaps = 7/323 (2%)

Query: 1   MGKAAEEEHQPLPRGGTSTDPALNAEEDCRCRCSRIRKLLSVRCIXXXXXXXXXXXXXXX 60
           MGKA EE+H  LPRG TS+DP  N E  CRC  S+IRKLL  RCI               
Sbjct: 1   MGKAEEEQH--LPRGVTSSDPPQNTETQCRCSSSQIRKLLGFRCILVFIFSLALFLSALF 58

Query: 61  XXXXXXRLADQKHLHENSRYKGHDIVASFIVNKSASLLEDNIPQLADEIFDEIGAPS-TK 119
                    D  +L++NS+YKGHDIVASFIVNKS  +LEDN  QL  +IFDEI AP+ T+
Sbjct: 59  WLPP---FVDHNNLYDNSKYKGHDIVASFIVNKSVPVLEDNKLQLEADIFDEIEAPAATQ 115

Query: 120 VVILSLDPLPGPNKTKVVFAVDPDVGLSEMAQAAISLIKSSFTSIIIRDSPFQLTSSSIF 179
           V ILSLDPLPGPNKTKVVFAVDPD G  EM+ +AISLI+S FTS++IR S  QLTSS +F
Sbjct: 116 VKILSLDPLPGPNKTKVVFAVDPDGGHPEMSLSAISLIRSLFTSLVIRQSVLQLTSS-LF 174

Query: 180 GDPFFFEVLKFKGGITIIPHQTAFPLQQRQTLFTFTLNFPIYQIQLDFDELTSQLKSGLH 239
           GDP FFEVLKFKGGITIIP Q AFPLQ  QT F F+LNFPIYQIQ +FDELTSQLKSGL 
Sbjct: 175 GDPHFFEVLKFKGGITIIPQQNAFPLQTVQTRFNFSLNFPIYQIQSNFDELTSQLKSGLR 234

Query: 240 LASFENLYMSLSNSEGSTVDAPTTVQSSVLLAIGITPSKQRLKQLAQTIMGPHNLGLNNT 299
           L+S+ENL++ LSNSEGSTVDAPTT+QSSVLLA+GI  SK R+KQLAQTIMGPHNLGLNNT
Sbjct: 235 LSSYENLHVILSNSEGSTVDAPTTIQSSVLLAVGIPSSKHRIKQLAQTIMGPHNLGLNNT 294

Query: 300 EFGRVKQVRLSSILQHSLHGNDG 322
           EFGRVK VRLSSILQHSL+G+D 
Sbjct: 295 EFGRVKHVRLSSILQHSLNGSDN 317



 Score = 89.0 bits (219), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/122 (43%), Positives = 67/122 (54%)

Query: 394 RSPQAQPPSFQFERRKRSSHNAGKHAHLAPSIAPTTHRHYHSPVASPKPPFEPPARNSRA 453
           +S QA PP   FE R+RS  + G+H +L P++AP+   H H P++SPKP  EPP   S +
Sbjct: 391 KSSQAHPPDCPFEHRQRSRRSGGRHTYLTPAVAPSIEHHSHVPISSPKPQVEPPTHASHS 450

Query: 454 VPALSPLPNVAFAHXXXXXXXXXXXXRMRMXXXXXXXXXXXXXXXXXVKWTFLMFIVLVL 513
           VPALSPLPNVAFAH            +                    VKWT L+F+VLVL
Sbjct: 451 VPALSPLPNVAFAHAEPPPKREPAAEQPSTQFHGLSLSPSSAGCIGTVKWTSLIFLVLVL 510

Query: 514 HV 515
           HV
Sbjct: 511 HV 512


>Medtr2g438510.1 | transmembrane protein, putative | HC |
           chr2:15559877-15555744 | 20130731
          Length = 448

 Score =  184 bits (466), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 113/296 (38%), Positives = 168/296 (56%), Gaps = 7/296 (2%)

Query: 26  EEDCRCRCSRIRKLLSVRCIXXXXXXXXXXXXXXXXXXXXXRLADQKHLHENSRYKGHDI 85
           ++D   RCS IR+  S +C+                             ++  +++ H +
Sbjct: 18  QDDEGARCSVIRRAFSFKCLFILFFSLAAFVSVIFWIIPKHNFEASFVANDVIKHRAH-V 76

Query: 86  VASFIVNKSASLLEDNIPQLADEIFDEIGAPSTKVVILSLDPLPGPNKTKVVFAVDPDVG 145
            ASF + K  S L   I +L DEIFDEI  P+TKV ILS+     PN + VVF V  D  
Sbjct: 77  QASFRLEKPVSQLIPYIERLEDEIFDEISLPNTKVAILSIHQSVAPNWSDVVFGVLSDPM 136

Query: 146 LSEMAQAAISLIKSSFTSIIIRDSPFQLTSSSIFGDPFFFEVLKFKGGITIIPHQTAFPL 205
              +    +S++KSS   + ++ +   LT+S +FG+   FE+LKF GG+T+IP Q+    
Sbjct: 137 NIPINPVYLSVLKSSLIDLFLQQTNLTLTTS-VFGNASLFEILKFPGGLTVIPVQSVSMW 195

Query: 206 QQRQTLFTFTLNFPIYQIQLDFDELTSQLKSGLHLASFENLYMSLSNSEGSTVDAPTTVQ 265
           Q R+ LF FTL+  I ++   FD+   +LK GLHL S EN+Y+ ++N+ GSTV  P  VQ
Sbjct: 196 QIREVLFNFTLHHSISEVLDKFDDFEEELKFGLHLKSDENVYVQITNARGSTVACPAVVQ 255

Query: 266 SSVLLAI-GITPSKQRLKQLAQTI--MGPHNLGLNNTEFGRVKQVRLSSILQHSLH 318
           +SV+     + P  QRLKQ+AQT+     +NLGLNN  FG+V+++RLSS+L+ +LH
Sbjct: 256 ASVMRGFESLLP--QRLKQIAQTVKHTAGNNLGLNNVVFGQVREIRLSSLLKDTLH 309