Miyakogusa Predicted Gene

Lj1g3v4080580.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4080580.1 tr|A8J1X1|A8J1X1_CHLRE Peroxisomal membrane
MPV17/PMP22-like protein OS=Chlamydomonas reinhardtii
GN,53.26,4e-19,seg,NULL; SUBFAMILY NOT NAMED,NULL; PEROXISOMAL
MEMBRANE PROTEIN 2, PXMP2 (MPV17),Mpv17/PMP22,CUFF.31838.1
         (206 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g088590.2 | peroxisomal membrane 22 kDa (Mpv17/PMP22) fami...   153   1e-37
Medtr7g088590.1 | peroxisomal membrane 22 kDa (Mpv17/PMP22) fami...   153   1e-37
Medtr1g106775.1 | peroxisomal membrane 22 kDa (Mpv17/PMP22) fami...    64   1e-10
Medtr6g038540.1 | peroxisomal membrane 22 kDa (Mpv17/PMP22) fami...    55   4e-08
Medtr6g038550.1 | hypothetical protein | LC | chr6:13820322-1382...    50   1e-06

>Medtr7g088590.2 | peroxisomal membrane 22 kDa (Mpv17/PMP22) family
           protein | HC | chr7:34521820-34525349 | 20130731
          Length = 245

 Score =  153 bits (387), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 74/91 (81%), Positives = 82/91 (90%)

Query: 104 WSFLSWYLALLAKHPVLVKALTSALLTLIGDLVCQLVIDKVQSPDFKRTFVFSLLGFVLV 163
           WSFLSWY+ALLAK+PV VKALTSA+L LIGDL+CQLVIDKVQ+PD KRTF+FS LG VLV
Sbjct: 91  WSFLSWYMALLAKYPVPVKALTSAILNLIGDLICQLVIDKVQTPDLKRTFLFSFLGLVLV 150

Query: 164 GPTLHFWYFYLSKLVTLPGASGAILRLFIYQ 194
           GPTLHFWY YLS+LVTLPG SGAILRL + Q
Sbjct: 151 GPTLHFWYLYLSQLVTLPGTSGAILRLVLDQ 181


>Medtr7g088590.1 | peroxisomal membrane 22 kDa (Mpv17/PMP22) family
           protein | HC | chr7:34521931-34525157 | 20130731
          Length = 257

 Score =  153 bits (387), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 74/91 (81%), Positives = 82/91 (90%)

Query: 104 WSFLSWYLALLAKHPVLVKALTSALLTLIGDLVCQLVIDKVQSPDFKRTFVFSLLGFVLV 163
           WSFLSWY+ALLAK+PV VKALTSA+L LIGDL+CQLVIDKVQ+PD KRTF+FS LG VLV
Sbjct: 91  WSFLSWYMALLAKYPVPVKALTSAILNLIGDLICQLVIDKVQTPDLKRTFLFSFLGLVLV 150

Query: 164 GPTLHFWYFYLSKLVTLPGASGAILRLFIYQ 194
           GPTLHFWY YLS+LVTLPG SGAILRL + Q
Sbjct: 151 GPTLHFWYLYLSQLVTLPGTSGAILRLVLDQ 181


>Medtr1g106775.1 | peroxisomal membrane 22 kDa (Mpv17/PMP22) family
           protein | HC | chr1:48311526-48306713 | 20130731
          Length = 259

 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 57/98 (58%), Gaps = 5/98 (5%)

Query: 103 KWSFLSWYLALLAKHPVLVKALTSALLTLIGDLVCQLVIDKV-QSPDFKRTFVFSLLGFV 161
           K  F+ WYL ++   P+L K++TSAL+    DL  Q +  +  +S DF RT   +  G +
Sbjct: 78  KVGFVGWYLGMIKSRPILTKSVTSALIYTAADLSSQTIERQSSKSFDFIRTLRMAGYGMI 137

Query: 162 LVGPTLHFWYFYLSKLVTLPGAS--GAILRLFIYQGRY 197
           ++GP+LHFW+ ++SKL   PG      + ++ + QG Y
Sbjct: 138 ILGPSLHFWFNFVSKL--FPGRDIFSTLKKMAMGQGIY 173


>Medtr6g038540.1 | peroxisomal membrane 22 kDa (Mpv17/PMP22) family
           protein | HC | chr6:13814332-13819860 | 20130731
          Length = 244

 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 53/94 (56%), Gaps = 1/94 (1%)

Query: 103 KWSFLSWYLALLAKHPVLVKALTSALLTLIGDLVCQLV-IDKVQSPDFKRTFVFSLLGFV 161
           K  F+ WYL  L  +PVL K +TS+L+    DL  Q++ +    S D KRT   ++ G +
Sbjct: 49  KLGFVGWYLRKLETYPVLTKCITSSLIFTAADLTSQMITLPSSASYDLKRTSRMTIYGLL 108

Query: 162 LVGPTLHFWYFYLSKLVTLPGASGAILRLFIYQG 195
           ++GP+ H ++ +LSK++     +  + ++ + Q 
Sbjct: 109 ILGPSQHKYFNFLSKILPNRDVATTLKKILMGQA 142


>Medtr6g038550.1 | hypothetical protein | LC |
           chr6:13820322-13821853 | 20130731
          Length = 169

 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 49/90 (54%), Gaps = 12/90 (13%)

Query: 103 KWSFLSWYLALLAKHPVLVKALTSALLTLIGDLVCQLVIDKVQSPDFKRTFVFSLLGFVL 162
           K  F++WYL  L  +P++ KA+TS+L+    DL  Q+    ++ P         + G ++
Sbjct: 54  KSEFVAWYLNKLETNPIITKAVTSSLICAAADLSSQM----IRKP--------PVYGLLI 101

Query: 163 VGPTLHFWYFYLSKLVTLPGASGAILRLFI 192
           +GP+ H W+ +LS ++   G    +++ ++
Sbjct: 102 LGPSQHLWFNFLSNILPTRGLVSTLMKTYL 131