Miyakogusa Predicted Gene
- Lj1g3v4080440.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v4080440.1 Non Characterized Hit- tr|C6TBC0|C6TBC0_SOYBN
Putative uncharacterized protein OS=Glycine max PE=2
S,77.54,0,SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL; PORR,Plant
organelle RNA recognition domain,CUFF.31834.1
(423 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr7g088530.1 | plant organelle RNA recognition domain protein... 657 0.0
Medtr6g033595.1 | plant organelle RNA recognition domain protein... 251 7e-67
Medtr3g063230.1 | plant organelle RNA recognition domain protein... 251 8e-67
Medtr3g063230.2 | plant organelle RNA recognition domain protein... 221 1e-57
Medtr2g067960.1 | plant organelle RNA recognition domain protein... 213 3e-55
Medtr3g105530.1 | plant organelle RNA recognition domain protein... 174 1e-43
Medtr7g107280.1 | plant organelle RNA recognition domain protein... 158 1e-38
Medtr8g089370.2 | plant organelle RNA recognition domain protein... 154 2e-37
Medtr8g089370.1 | plant organelle RNA recognition domain protein... 154 2e-37
Medtr7g117270.1 | plant organelle RNA recognition domain protein... 140 3e-33
Medtr0153s0070.2 | plant organelle RNA recognition domain protei... 134 1e-31
Medtr3g029990.2 | ubiquitin carboxyl-terminal hydrolase family p... 133 3e-31
Medtr3g029990.1 | ubiquitin carboxyl-terminal hydrolase family p... 133 3e-31
Medtr1g032380.1 | plant organelle RNA recognition domain protein... 132 6e-31
Medtr1g032040.1 | plant organelle RNA recognition domain protein... 132 6e-31
Medtr1g019170.4 | plant organelle RNA recognition domain protein... 132 6e-31
Medtr1g019170.3 | plant organelle RNA recognition domain protein... 132 6e-31
Medtr1g019170.1 | plant organelle RNA recognition domain protein... 132 6e-31
Medtr1g019170.2 | plant organelle RNA recognition domain protein... 132 6e-31
Medtr6g043850.1 | plant organelle RNA recognition domain protein... 132 7e-31
Medtr0153s0070.1 | plant organelle RNA recognition domain protei... 129 4e-30
Medtr1g072550.1 | plant organelle RNA recognition domain protein... 129 4e-30
Medtr1g072550.2 | plant organelle RNA recognition domain protein... 129 4e-30
Medtr3g030020.1 | plant organelle RNA recognition domain protein... 129 4e-30
Medtr1g098960.1 | plant organelle RNA recognition domain protein... 126 5e-29
Medtr3g083350.1 | plant organelle RNA recognition domain protein... 122 9e-28
Medtr4g053720.1 | plant organelle RNA recognition domain protein... 121 1e-27
Medtr7g018630.1 | plant organelle RNA recognition domain protein... 112 8e-25
Medtr3g074730.1 | plant organelle RNA recognition domain protein... 105 7e-23
Medtr3g448960.1 | plant organelle RNA recognition domain protein... 87 3e-17
Medtr8g102038.1 | plant organelle RNA recognition domain protein... 70 3e-12
>Medtr7g088530.1 | plant organelle RNA recognition domain protein |
HC | chr7:34489084-34490337 | 20130731
Length = 417
Score = 657 bits (1695), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/422 (79%), Positives = 367/422 (86%), Gaps = 7/422 (1%)
Query: 1 MNLLSSLRYRIFQSTTI--SFSPFILFHQRRWKKPTISAQTRLEDRVRDPHLDNFMTHLK 58
MN LS+ RYRIFQ+TT SFSPF LF+Q+RWKKPTISAQTRLEDR+RD H D TH K
Sbjct: 1 MNPLSTFRYRIFQATTTISSFSPFFLFNQKRWKKPTISAQTRLEDRIRDTHFDKLTTHFK 60
Query: 59 KLYLVLGFHNLMSNRKRGPFVSLQLMSRWRNILGLNVTVGSFLHKYPHVFEVFAHPFRRN 118
KL LVL NL+SNRKRG FVSLQLMSRW+NI GLNVTV SFL KYPHVF +F HPFRRN
Sbjct: 61 KLSLVLKTRNLISNRKRGSFVSLQLMSRWKNITGLNVTVTSFLQKYPHVFYLFVHPFRRN 120
Query: 119 PCCRFTRKMKELILLERVVVKELEMEAVKRVKKLLMMSVNGTLRVHALRLMRRELGLPQD 178
CCR T+KMKELILLE VVV++ E+E VKRVKKLLMMSVNGTL +HALRL+RRELGLP D
Sbjct: 121 MCCRMTKKMKELILLEEVVVRQHEVEVVKRVKKLLMMSVNGTLHLHALRLIRRELGLPCD 180
Query: 179 FRDSILGKYSGDFRLVDLEVVALVGWDDELGTAQVEKWREKEYTEKWLSEFETKFAFPIN 238
FR+SILG+YS +FRLVDLE+VALVGWDDELG A+VE+WRE+EY EKWLSEFETKFAFPIN
Sbjct: 181 FRESILGRYSDEFRLVDLEIVALVGWDDELGMARVEEWREREYREKWLSEFETKFAFPIN 240
Query: 239 FPTGFKIERGFREKLKNWQRLPYTKPYERKEGIRVRTCGGVQRYEKRAVAVLHELLSLTV 298
FPTGFKIERGFREKLK WQRL YTKPYERK CGGVQRYEKRAVAVLHELLSLTV
Sbjct: 241 FPTGFKIERGFREKLKGWQRLSYTKPYERKNV----KCGGVQRYEKRAVAVLHELLSLTV 296
Query: 299 EKMVEVDQLAHFRRDFAIEVNVRELLLTHPGIFYISTKGKAQTVFLREAYSKGGLVEPNP 358
EKMVEVDQLAHFRRDF IEVNVRELLL HPGIFYISTKG AQTVFLREAY KGGL+EPNP
Sbjct: 297 EKMVEVDQLAHFRRDFDIEVNVRELLLRHPGIFYISTKGNAQTVFLREAYEKGGLIEPNP 356
Query: 359 VYTARRNMLDLILLGRRKTKQFLDCDSKSKEESNAVVYELDDEGVQRQGDWVIPFLESCE 418
VY RRNML+L+LLGRRKTKQ L +SKEESNAVVYE+D E ++R+GDWVIPFLE+ E
Sbjct: 357 VYEVRRNMLELVLLGRRKTKQLLASCDESKEESNAVVYEVDGE-IKREGDWVIPFLEANE 415
Query: 419 QN 420
+N
Sbjct: 416 KN 417
>Medtr6g033595.1 | plant organelle RNA recognition domain protein |
HC | chr6:10945964-10948263 | 20130731
Length = 466
Score = 251 bits (642), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 146/345 (42%), Positives = 205/345 (59%), Gaps = 8/345 (2%)
Query: 42 EDRVRDPHLDNFMTHLKKLYLVLGFHNLMSNRKRGPFVSLQLMSRWRNILGLNVTVGSFL 101
+ R+RD DN+M KK VL F NL+ + +L ++ I +F+
Sbjct: 46 QQRIRDHGYDNYMEIEKKTRKVLKFQNLILSEPNQSIPISRLETQAHRIGFTRHEAIAFI 105
Query: 102 HKYPHVFEVFAHPFRRNPCCRFTRKMKELILLERVVVKELEMEAVKRVKKLLMMSVNGTL 161
K+ HVFE+F HP +R CR TRK I ER+ + + AV R++K++MMS L
Sbjct: 106 LKFLHVFEIFEHPVQRILFCRLTRKAILQIEQERLALADQVERAVTRLRKMIMMSNGLRL 165
Query: 162 RVHALRLMRRELGLPQDFRDSILGKYSGDFRLVDLE-----VVALVGWDDELGTAQVEKW 216
R+ +R+ R LGLP DF S++ +Y FRLVD + + LV +D +L +E
Sbjct: 166 RLEHVRIARSALGLPDDFEYSVVLRYPEFFRLVDAKETRNKYIELVEFDPKLAKCAIEDA 225
Query: 217 REKEYTEKWLSEFETKFAFPINFPTGFKIERGFREKLKNWQRLPYTKPYERKEGIRVRTC 276
RE+ Y E+ + +F+F I+FP GFKI + FR + WQRLPY PYE G +R+
Sbjct: 226 RERVYRERGSEAEDIRFSFLIDFPPGFKISKYFRIAMWKWQRLPYWSPYEDVLGYDLRSI 285
Query: 277 GGVQRYEKRAVAVLHELLSLTVEKMVEVDQLAHFRRDFAIEVNVRELLLTHPGIFYISTK 336
+R EKRAVA +HELLSLTVEK + ++++AHFR + ++E LL H GIFY+ST+
Sbjct: 286 EAQKRMEKRAVATIHELLSLTVEKKITLERIAHFRMAMNLPKKLKEFLLQHQGIFYVSTR 345
Query: 337 ---GKAQTVFLREAYSKGGLVEPNPVYTARRNMLDLILLGRRKTK 378
GK TVFLREAYSKG LVEPN +Y ARR +++L+LL RK +
Sbjct: 346 GNHGKLHTVFLREAYSKGELVEPNDLYLARRKLVELVLLSPRKAR 390
>Medtr3g063230.1 | plant organelle RNA recognition domain protein |
HC | chr3:28611519-28613057 | 20130731
Length = 425
Score = 251 bits (642), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 135/343 (39%), Positives = 198/343 (57%), Gaps = 8/343 (2%)
Query: 41 LEDRVRDPHLDNFMTHLKKLYLVLGFHNLMSNRKRGPFVSLQLMSRWRNILGLNVTVGSF 100
+ R RDP + M K L V+ H+L+ + VS+ +S L LN +F
Sbjct: 49 VNSRARDPTFEKLMDKYKNLLKVIAVHDLILANPKNRSVSVDFLSNLSQRLHLNRGATAF 108
Query: 101 LHKYPHVFEVFAHPFRRNPCCRFTRKMKELILLERVVVKELEMEAVKRVKKLLMMSVNGT 160
L K+PH+F ++ P + P CR T ++ E + V+R+ ++L MS + T
Sbjct: 109 LRKFPHIFNIYYEPSKLQPFCRLTDAALDVSRQEAEAINTSLPLVVERLVRILSMSASKT 168
Query: 161 LRVHALRLMRRELGLPQDFRDSILGKYSGDFRLVDLE-----VVALVGWDDELG-TAQVE 214
+ + A+ + RELGLP DF +S++ S F+L D + ++ LVG G A VE
Sbjct: 169 VPLRAVFKVWRELGLPDDFEESVIAANSSVFQLCDADEQNTHLLKLVGDVPSSGFRAAVE 228
Query: 215 KWREKEYT--EKWLSEFETKFAFPINFPTGFKIERGFREKLKNWQRLPYTKPYERKEGIR 272
WR E E ++ E +++F +P G ++ + FR +K WQ LPY PYE +
Sbjct: 229 DWRVVECCKDESSVNSMEMRYSFKQRYPPGMRLSKNFRANVKEWQSLPYMGPYEMVSEKK 288
Query: 273 VRTCGGVQRYEKRAVAVLHELLSLTVEKMVEVDQLAHFRRDFAIEVNVRELLLTHPGIFY 332
+ G+ EKRAV+++HE +SLTVEKMVEV++++ FR+ F I+ N+R+L L HPGIFY
Sbjct: 289 KTSKAGMMAMEKRAVSIVHEFMSLTVEKMVEVEKISQFRKWFGIDFNIRDLFLDHPGIFY 348
Query: 333 ISTKGKAQTVFLREAYSKGGLVEPNPVYTARRNMLDLILLGRR 375
+STKGK TVFLREAY +G L+ PNPVY ARR +LDL+ L RR
Sbjct: 349 LSTKGKRHTVFLREAYERGCLIHPNPVYDARRRLLDLVALERR 391
>Medtr3g063230.2 | plant organelle RNA recognition domain protein |
HC | chr3:28611460-28613057 | 20130731
Length = 401
Score = 221 bits (562), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 125/337 (37%), Positives = 185/337 (54%), Gaps = 20/337 (5%)
Query: 41 LEDRVRDPHLDNFMTHLKKLYLVLGFHNLMSNRKRGPFVSLQLMSRWRNILGLNVTVGSF 100
+ R RDP + M K L V+ H+L+ + VS+ +S L LN +F
Sbjct: 49 VNSRARDPTFEKLMDKYKNLLKVIAVHDLILANPKNRSVSVDFLSNLSQRLHLNRGATAF 108
Query: 101 LHKYPHVFEVFAHPFRRNPCCRFTRKMKELILLERVVVKELEMEAVKRVKKLLMMSVNGT 160
L K+PH+F ++ P + P CR T ++ E + V+R+ ++L MS + T
Sbjct: 109 LRKFPHIFNIYYEPSKLQPFCRLTDAALDVSRQEAEAINTSLPLVVERLVRILSMSASKT 168
Query: 161 LRVHALRLMRRELGLPQDFRDSILGKYSGDFRLVDLEVVALVGWDDELGTAQVEKWREKE 220
+ + A+ + D +++ L K GD V G+ A VE WR E
Sbjct: 169 VPLRAVFKL-----CDADEQNTHLLKLVGD--------VPSSGF-----RAAVEDWRVVE 210
Query: 221 YT--EKWLSEFETKFAFPINFPTGFKIERGFREKLKNWQRLPYTKPYERKEGIRVRTCGG 278
E ++ E +++F +P G ++ + FR +K WQ LPY PYE + + G
Sbjct: 211 CCKDESSVNSMEMRYSFKQRYPPGMRLSKNFRANVKEWQSLPYMGPYEMVSEKKKTSKAG 270
Query: 279 VQRYEKRAVAVLHELLSLTVEKMVEVDQLAHFRRDFAIEVNVRELLLTHPGIFYISTKGK 338
+ EKRAV+++HE +SLTVEKMVEV++++ FR+ F I+ N+R+L L HPGIFY+STKGK
Sbjct: 271 MMAMEKRAVSIVHEFMSLTVEKMVEVEKISQFRKWFGIDFNIRDLFLDHPGIFYLSTKGK 330
Query: 339 AQTVFLREAYSKGGLVEPNPVYTARRNMLDLILLGRR 375
TVFLREAY +G L+ PNPVY ARR +LDL+ L RR
Sbjct: 331 RHTVFLREAYERGCLIHPNPVYDARRRLLDLVALERR 367
>Medtr2g067960.1 | plant organelle RNA recognition domain protein |
HC | chr2:28431693-28434356 | 20130731
Length = 431
Score = 213 bits (541), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 122/290 (42%), Positives = 175/290 (60%), Gaps = 8/290 (2%)
Query: 97 VGSFLHKYPHVFEVFAHPFRRNPCCRFTRKMKELILLERVVVKELEMEAVKRVKKLLMMS 156
+F+ K+P+VFE+F H +R CR TRK I ER+ + + V ++K++MMS
Sbjct: 66 ASAFILKFPYVFEIFEHLVQRILFCRLTRKTILQIEQERLALADQVGRTVTCLRKMIMMS 125
Query: 157 VNGTLRVHALRLMRRELGLPQDFRDSILGKYSGDFRLVDLE-----VVALVGWDDELGTA 211
LR+ +R+ R LGL DF ++ +Y FRLVD + + LV +D +L T
Sbjct: 126 NGLRLRLEHVRIARSALGLRDDFEYLVVLRYPEFFRLVDAKETRNKYIELVEFDPKLATC 185
Query: 212 QVEKWREKEYTEKWLSEFETKFAFPINFPTGFKIERGFREKLKNWQRLPYTKPYERKEGI 271
+E RE+ Y E+ + +F+F I+F GFKI + FR + WQ LPY PYE G
Sbjct: 186 AIEDARERVYRERGSEAEDIRFSFLIDFLPGFKISKYFRIAMWKWQSLPYWSPYEDVWGY 245
Query: 272 RVRTCGGVQRYEKRAVAVLHELLSLTVEKMVEVDQLAHFRRDFAIEVNVRELLLTHPGIF 331
+R+ +R EKRAVA +HELLSLTVEK + ++++AHF+ + ++E LL H GIF
Sbjct: 246 DLRSPEAQKRMEKRAVATIHELLSLTVEKKITLERIAHFQMAMNLPKKLKEFLLQHQGIF 305
Query: 332 YISTK---GKAQTVFLREAYSKGGLVEPNPVYTARRNMLDLILLGRRKTK 378
Y+ST+ GK TVFLREAY KG LVEPN +Y ARR + +++LL RK +
Sbjct: 306 YVSTRGNHGKLHTVFLREAYRKGELVEPNDLYLARRKLAEVVLLSPRKAR 355
>Medtr3g105530.1 | plant organelle RNA recognition domain protein |
HC | chr3:48661486-48663294 | 20130731
Length = 431
Score = 174 bits (442), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 127/387 (32%), Positives = 197/387 (50%), Gaps = 38/387 (9%)
Query: 26 HQRRWKKPTISAQTRLEDRVRDPHLDNFMTHLKKLYLVLGFHNLMSNRKRGP--FVSLQL 83
H RW ++ R++DR + + +K + L+ ++ P + ++
Sbjct: 19 HFERW----MTTSKRVQDRSKKKRVHELEAATEKWKITSKIVFLIELLEQEPEIVIPVRS 74
Query: 84 MSRWRNILGLNVT--VGSFLHKYPHVFEVFAHPFRRNPC--CRFTRKMKELILLERVVVK 139
+S +R + L + FL K P +FE++ RN C T+K + L+ + V++
Sbjct: 75 LSHYRKQISLPKPHRISDFLRKTPKLFELYKD---RNGVLWCGLTQKAEVLMEEHKRVIE 131
Query: 140 ELEMEAVKRVKKLLMMSVNGTLRVHALRLMRRELGLPQDFRDSILGKYSGDFRLV----- 194
E E +A + V +LLMMSV+ +++ + RR+ GLP DFR + KY FR+V
Sbjct: 132 ENEDKAAEYVTRLLMMSVDKRVQLDKIAHFRRDFGLPMDFRTHWVHKYPQLFRVVKPSLD 191
Query: 195 DLEVVALVGWDDELGTAQVEKWR--------EKEYTEKWLSEFETKFAFPINFPTGFK-I 245
D+E + LV W+ E ++EK E E+T LS FP+ FP FK +
Sbjct: 192 DVEFLELVSWNSEWAITEIEKKNKMILEGVTETEHTPGLLS-----LPFPLKFPANFKRV 246
Query: 246 ERGFREKLKNWQRLPYTKPYERKEGIRVRTCGGVQRYEKRAVAVLHELLSLTVEKMVEVD 305
+ EK+K +Q Y PY +G++ G ++KRAVAV+HELLS TVEK + D
Sbjct: 247 HSYYGEKIKMFQERTYLSPYADAKGLK----PGSLEFDKRAVAVMHELLSFTVEKRLVTD 302
Query: 306 QLAHFRRDFAIEVNVRELLLTHPGIFYISTKGKAQTVFLREAYSKGGLVEPNPVYTARRN 365
L HFR + + + LLL H GIFY+S +GK +VFL EAY L+E +P++ R
Sbjct: 303 HLTHFRWELVMPQKLMRLLLKHCGIFYVSERGKRFSVFLTEAYEGSELIEKSPLFLWREK 362
Query: 366 MLDLILLGRRKTKQFLDCDSKSKEESN 392
+L L+ G R K+ + DS S EE
Sbjct: 363 LLSLV--GYRGRKKKFEADSDSDEEGG 387
>Medtr7g107280.1 | plant organelle RNA recognition domain protein |
HC | chr7:43760664-43762324 | 20130731
Length = 420
Score = 158 bits (399), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 98/311 (31%), Positives = 155/311 (49%), Gaps = 14/311 (4%)
Query: 73 RKRGPFVSLQLMSRWRNILGLNVTVGSFLHKYPHVFEVFAHP-FRRNPCCRFTRKMKELI 131
R F++ + S W+ +LGL V V F+ +YP +F F HP + PC R T + L
Sbjct: 60 RSSTSFLTAKTFSDWQKLLGLTVPVLRFIRRYPTLFHEFPHPRWNSLPCFRLTDTAQLLD 119
Query: 132 LLERVVVKELEMEAVKRVKKLLMMSVNGTLRVHALRLMRRELGLPQDFRDSILGKYSGDF 191
E+ + E + V+R K+LMM + T+ + +L ++ +LGLP F +++ KY F
Sbjct: 120 SQEQSIYAVHENDIVERFSKVLMMMKSRTVPIQSLYPLKFDLGLPDAFEKTLIPKYPDKF 179
Query: 192 RLV----DLEVVALVGWDDELGTAQVEKWR--EKEYTEKWLSEFE---TKFAFPINFPTG 242
+ V + + LV W DE + ++K E E +F+ T FP+ FP G
Sbjct: 180 QFVKAGNGVSAIRLVDWCDEFAVSALQKSNQCESENASDQYRDFKRGKTALVFPMRFPRG 239
Query: 243 FKIERGFREKLKNWQRLPYTKPYERKEGIRVRTCGGVQRYEKRAVAVLHELLSLTVEKMV 302
+ ++ R + +Q+LPY PY I ++ EKR V VLHE LSL + K
Sbjct: 240 YGGQKKVRFWMDEFQKLPYISPYADSSKIDPKS----DLMEKRVVGVLHEFLSLCLHKKT 295
Query: 303 EVDQLAHFRRDFAIEVNVRELLLTHPGIFYISTKGKAQTVFLREAYSKGGLVEPNPVYTA 362
+ + L R + + + +PGIFY+S K K TV LRE Y++G LV+P+P+
Sbjct: 296 KRNYLRSLREELNLPHKFTRIFTRYPGIFYLSLKCKTTTVTLREGYARGKLVDPHPLARH 355
Query: 363 RRNMLDLILLG 373
R ++ G
Sbjct: 356 RDKFYHVMRTG 366
>Medtr8g089370.2 | plant organelle RNA recognition domain protein |
HC | chr8:37138838-37141109 | 20130731
Length = 389
Score = 154 bits (389), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 102/307 (33%), Positives = 166/307 (54%), Gaps = 19/307 (6%)
Query: 78 FVSLQLMSRWRNILGL--NVTVGSFLHKYPHVFEVFAHPFRRN----PCCRFTRKMKELI 131
+V + +SR R LGL + + F+ +YP+VF V ++ PC + + ++
Sbjct: 70 YVPIYRLSRHRGQLGLPDEIKLAVFIRRYPNVF-VESYSLDSGGSPVPCFGLSSEAMKIH 128
Query: 132 LLERVVVKELEMEAVKRVKKLLMMSVNGTLRVHALRLMRRELGLPQDFRDSILGKYSGDF 191
E +++E +E R+ KLLM++ + L + + ++ +LGLP D++DS + + F
Sbjct: 129 REEVDILRENSLEFRDRLCKLLMLTRDWMLPLQTIDQLKWDLGLPYDYQDSFVMNHPEKF 188
Query: 192 ---RLVDLEV-VALVGWDDELGTAQVEKWREKEYTEKWLSEFET-KFAFPINFPTGFKIE 246
RL D+ V + L+ WDD+L +++EK ++ + + + AFP++F GF ++
Sbjct: 189 SFVRLPDVRVGLKLLFWDDKLAVSELEK---NASLQQQVEDIKNGTLAFPVSFTRGFGMK 245
Query: 247 RGFREKLKNWQRLPYTKPYERKEGIRVRTCGGVQRYEKRAVAVLHELLSLTVEKMVEVDQ 306
R E L+ WQ+LPYT PY + +RT EKR V V HELL LT+ K E
Sbjct: 246 RKSMEWLREWQKLPYTSPYADASHLDIRT----DVSEKRVVGVFHELLHLTLHKQTERKN 301
Query: 307 LAHFRRDFAIEVNVRELLLTHPGIFYISTKGKAQTVFLREAYSKGGLVEPNPVYTARRNM 366
+++ RR A+ + HPGIFYIS K QTV LREAY+ G LV+ +P+ R +
Sbjct: 302 VSNLRRPLALPQKFTKAFERHPGIFYISKKNDTQTVVLREAYNGGELVQKHPLVKIREEL 361
Query: 367 LDLILLG 373
+L+ G
Sbjct: 362 ANLLKKG 368
>Medtr8g089370.1 | plant organelle RNA recognition domain protein |
HC | chr8:37138838-37141109 | 20130731
Length = 389
Score = 154 bits (389), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 102/307 (33%), Positives = 166/307 (54%), Gaps = 19/307 (6%)
Query: 78 FVSLQLMSRWRNILGL--NVTVGSFLHKYPHVFEVFAHPFRRN----PCCRFTRKMKELI 131
+V + +SR R LGL + + F+ +YP+VF V ++ PC + + ++
Sbjct: 70 YVPIYRLSRHRGQLGLPDEIKLAVFIRRYPNVF-VESYSLDSGGSPVPCFGLSSEAMKIH 128
Query: 132 LLERVVVKELEMEAVKRVKKLLMMSVNGTLRVHALRLMRRELGLPQDFRDSILGKYSGDF 191
E +++E +E R+ KLLM++ + L + + ++ +LGLP D++DS + + F
Sbjct: 129 REEVDILRENSLEFRDRLCKLLMLTRDWMLPLQTIDQLKWDLGLPYDYQDSFVMNHPEKF 188
Query: 192 ---RLVDLEV-VALVGWDDELGTAQVEKWREKEYTEKWLSEFET-KFAFPINFPTGFKIE 246
RL D+ V + L+ WDD+L +++EK ++ + + + AFP++F GF ++
Sbjct: 189 SFVRLPDVRVGLKLLFWDDKLAVSELEK---NASLQQQVEDIKNGTLAFPVSFTRGFGMK 245
Query: 247 RGFREKLKNWQRLPYTKPYERKEGIRVRTCGGVQRYEKRAVAVLHELLSLTVEKMVEVDQ 306
R E L+ WQ+LPYT PY + +RT EKR V V HELL LT+ K E
Sbjct: 246 RKSMEWLREWQKLPYTSPYADASHLDIRT----DVSEKRVVGVFHELLHLTLHKQTERKN 301
Query: 307 LAHFRRDFAIEVNVRELLLTHPGIFYISTKGKAQTVFLREAYSKGGLVEPNPVYTARRNM 366
+++ RR A+ + HPGIFYIS K QTV LREAY+ G LV+ +P+ R +
Sbjct: 302 VSNLRRPLALPQKFTKAFERHPGIFYISKKNDTQTVVLREAYNGGELVQKHPLVKIREEL 361
Query: 367 LDLILLG 373
+L+ G
Sbjct: 362 ANLLKKG 368
>Medtr7g117270.1 | plant organelle RNA recognition domain protein |
HC | chr7:48441549-48444050 | 20130731
Length = 530
Score = 140 bits (353), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 104/338 (30%), Positives = 167/338 (49%), Gaps = 23/338 (6%)
Query: 50 LDNFMTHLKKLYLVLGFHNLMSNRKRGPFVSLQLMSRWRNILGLNVT--VGSFLHKYPHV 107
DN + KKL VL ++ + K +SLQ + ++R LGL+ + L ++P V
Sbjct: 92 FDNVIQKDKKLKFVLKVRKILVS-KPTRVMSLQELGKYRRELGLDKKRKLIVILRRFPGV 150
Query: 108 FEVFAHPFRRNPCC----RFTRKMKELILLERVVVKELEMEAVKRVKKLLMMSVNGTLRV 163
FE+ + C + T + ++L L E V E+E V +++KLLMM + + +
Sbjct: 151 FEIVE-----DGCYSLKFKMTSEAEKLYLEELRVRNEMEDVVVTKLRKLLMMPLEKRILL 205
Query: 164 HALRLMRRELGLPQDFRDSILGKYSGDFRLVDLE---VVALVGWDDELGTA----QVEKW 216
+ + +LGLP++FRD+I +Y F++V E + L WD L + E+
Sbjct: 206 EKIGHLANDLGLPREFRDTICHRYPEFFKVVQTERGPALELTHWDPHLAVSAAELSAEEN 265
Query: 217 REKEYTEKWLSEFETKFAFPINFPTGFKIERGFREKLKNWQRLPYTKPYERKEGIRVRTC 276
R +E E+ L + P G + +G K+ ++ +PY PY I + T
Sbjct: 266 RIREVEEQNLIIDRAPKFNRVKLPKGLSLSKGEMRKIMQFRDIPYISPYSDFSMIGLNTP 325
Query: 277 GGVQRYEKRAVAVLHELLSLTVEKMVEVDQLAHFRRDFAIEVNVRELLLTHPGIFYISTK 336
EK A V+HE+LSLT+EK VD HFR +F +R +L+ HP +FYIS K
Sbjct: 326 ----EKEKHACGVIHEILSLTLEKRTLVDNFTHFREEFRFSQQLRGMLIRHPDMFYISLK 381
Query: 337 GKAQTVFLREAYSKGGLVEPNPVYTARRNMLDLILLGR 374
G +VFLREAY LV+ + + + + L+ + R
Sbjct: 382 GDRDSVFLREAYRDSQLVDKDRLLLVKEKLRSLVDIPR 419
>Medtr0153s0070.2 | plant organelle RNA recognition domain protein |
HC | scaffold0153:34902-38440 | 20130731
Length = 335
Score = 134 bits (338), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 103/326 (31%), Positives = 162/326 (49%), Gaps = 36/326 (11%)
Query: 26 HQRRWKKPTISAQTRLEDRVRDPHLDNFMTHLKKLYLVLGFHNLMSNRKRGP--FVSLQL 83
H RW ++ R++DR + + +K + L+ ++ P + ++
Sbjct: 26 HCERW----MTTSKRVQDRSKKKRVHELEAATEKWKITSKIVFLIELLEQEPEIVIPVRS 81
Query: 84 MSRWRNILGLNVT--VGSFLHKYPHVFEVFAHPFRRNPC--CRFTRKMKELILLERVVVK 139
+S +R + L + FL K P +FE++ RN C T+K + L+ + V++
Sbjct: 82 LSHYRKQISLPKPHRISDFLRKTPKLFELYKD---RNGVLWCGLTQKAEVLMEEHKRVIE 138
Query: 140 ELEMEAVKRVKKLLMMSVNGTLRVHALRLMRRELGLPQDFRDSILGKYSGDFRLV----- 194
E E +A + V +LLMMSV+ +++ + RR+ GLP DFR + KY FR+V
Sbjct: 139 ENEDKAAEYVTRLLMMSVDKRVQLDKIAHFRRDFGLPMDFRTHWVHKYPQLFRVVKPSLD 198
Query: 195 DLEVVALVGWDDELGTAQVEKWR--------EKEYTEKWLSEFETKFAFPINFPTGFK-I 245
D+E + LV W+ E ++EK E E+T LS FP+ FP FK +
Sbjct: 199 DVEFLELVSWNSEWAITEIEKKNKMIMEGVTETEHTPGLLS-----LPFPLKFPANFKRV 253
Query: 246 ERGFREKLKNWQRLPYTKPYERKEGIRVRTCGGVQRYEKRAVAVLHELLSLTVEKMVEVD 305
+ EK+K +Q Y PY +G++ G ++KRAVAV+HELLS TVEK + D
Sbjct: 254 HSYYGEKIKMFQERTYLSPYADAKGLK----PGSLEFDKRAVAVMHELLSFTVEKRLVTD 309
Query: 306 QLAHFRRDFAIEVNVRELLLTHPGIF 331
L HFR + + + LLL H GIF
Sbjct: 310 HLTHFRWELVMPQKLMRLLLKHCGIF 335
>Medtr3g029990.2 | ubiquitin carboxyl-terminal hydrolase family
protein | HC | chr3:9456270-9464177 | 20130731
Length = 626
Score = 133 bits (335), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 92/307 (29%), Positives = 149/307 (48%), Gaps = 28/307 (9%)
Query: 79 VSLQLMSRWRNILGLNVTVGSFLHKYPHVFEVFAHPFRRNPCCRFTRKMKELILLERVVV 138
+ +Q + + L L +++ KYP F+ F ++ T++M EL+ E+ +
Sbjct: 59 IPIQTLQKKFKTLDLQGKALNWISKYPSCFQ-----FHQDHVL-LTKRMMELVHEEQSLK 112
Query: 139 KELEMEAVKRVKKLLMMSVNGTLRVHALRLMRRELGLPQDFRDSILGKYSGDFRLVDLE- 197
LE V R+ KLLM+S+N L V + ++ LG P D+ I+ KY FR+ +
Sbjct: 113 DSLESVFVPRLAKLLMLSLNNCLNVMKINEIKNSLGFPDDYLIGIVAKYPDLFRIRNESG 172
Query: 198 -----VVALVGWDDELGTAQVEKWREKEYTEKWLSEFETKFAFPINFPTGFKIERGFREK 252
VV L+ W+ + ++VE K E F P+ + EK
Sbjct: 173 RRSSMVVELMKWNPDFAVSEVEALAMKNGVE---------VNFSCCLPSSWVKSL---EK 220
Query: 253 LKNWQRLPYTKPYERKEGIRVRTCGGVQRYEKRAVAVLHELLSLTVEKMVEVDQLAHFRR 312
+ ++ +PY PY G+ G + EKR V ++HELLSLT+ K + + +L HF+R
Sbjct: 221 FREFELVPYVSPYSDPRGL----VEGSKEMEKRNVGLVHELLSLTLWKKISIMKLGHFKR 276
Query: 313 DFAIEVNVRELLLTHPGIFYISTKGKAQTVFLREAYSKGGLVEPNPVYTARRNMLDLILL 372
+F + V LLL HPGIFY+S K + TV LRE Y LV+ +P+ + +++
Sbjct: 277 EFFLPDKVNVLLLKHPGIFYVSNKYRIYTVLLREGYVGSQLVDKDPLVVVKEKFGEIMQE 336
Query: 373 GRRKTKQ 379
G + Q
Sbjct: 337 GLHEYNQ 343
>Medtr3g029990.1 | ubiquitin carboxyl-terminal hydrolase family
protein | HC | chr3:9456270-9462535 | 20130731
Length = 630
Score = 133 bits (335), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 92/307 (29%), Positives = 149/307 (48%), Gaps = 28/307 (9%)
Query: 79 VSLQLMSRWRNILGLNVTVGSFLHKYPHVFEVFAHPFRRNPCCRFTRKMKELILLERVVV 138
+ +Q + + L L +++ KYP F+ F ++ T++M EL+ E+ +
Sbjct: 59 IPIQTLQKKFKTLDLQGKALNWISKYPSCFQ-----FHQDHVL-LTKRMMELVHEEQSLK 112
Query: 139 KELEMEAVKRVKKLLMMSVNGTLRVHALRLMRRELGLPQDFRDSILGKYSGDFRLVDLE- 197
LE V R+ KLLM+S+N L V + ++ LG P D+ I+ KY FR+ +
Sbjct: 113 DSLESVFVPRLAKLLMLSLNNCLNVMKINEIKNSLGFPDDYLIGIVAKYPDLFRIRNESG 172
Query: 198 -----VVALVGWDDELGTAQVEKWREKEYTEKWLSEFETKFAFPINFPTGFKIERGFREK 252
VV L+ W+ + ++VE K E F P+ + EK
Sbjct: 173 RRSSMVVELMKWNPDFAVSEVEALAMKNGVE---------VNFSCCLPSSWVKSL---EK 220
Query: 253 LKNWQRLPYTKPYERKEGIRVRTCGGVQRYEKRAVAVLHELLSLTVEKMVEVDQLAHFRR 312
+ ++ +PY PY G+ G + EKR V ++HELLSLT+ K + + +L HF+R
Sbjct: 221 FREFELVPYVSPYSDPRGL----VEGSKEMEKRNVGLVHELLSLTLWKKISIMKLGHFKR 276
Query: 313 DFAIEVNVRELLLTHPGIFYISTKGKAQTVFLREAYSKGGLVEPNPVYTARRNMLDLILL 372
+F + V LLL HPGIFY+S K + TV LRE Y LV+ +P+ + +++
Sbjct: 277 EFFLPDKVNVLLLKHPGIFYVSNKYRIYTVLLREGYVGSQLVDKDPLVVVKEKFGEIMQE 336
Query: 373 GRRKTKQ 379
G + Q
Sbjct: 337 GLHEYNQ 343
>Medtr1g032380.1 | plant organelle RNA recognition domain protein |
HC | chr1:11495605-11496780 | 20130731
Length = 391
Score = 132 bits (332), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 97/339 (28%), Positives = 159/339 (46%), Gaps = 17/339 (5%)
Query: 46 RDPHLDNFMTHLKKLYLVLGFHNLMSNRKRGPFVSLQLMSRWRNILGLNVTVGSFLHKYP 105
+DP LD + K+ + N G + L+ + + R + L V + +FL++ P
Sbjct: 37 KDPSLDQAIEQDKRFKQCFRVVKEVLNEP-GQVIPLRYLEKRRQRMRLKVKIDTFLNQNP 95
Query: 106 HVFEVFAHPFR-RNPCCRFTRKMKELILL---ERVVVKELEMEAVKRVKKLLMMSVNGTL 161
+F+V+ + + +F R L+ E+ + KE E V ++ KLLMMS + +
Sbjct: 96 FLFDVYYDRIKPKTKPVKFLRVSDHLLQFLEEEKRIYKENEPLIVSKLCKLLMMSKDKVV 155
Query: 162 RVHALRLMRRELGLPQDFRDSILGKYSGDFRLVDL-----EVVALVGWDDELGTAQVEKW 216
L ++RE G P DF ++ +Y FRL L + LV W+ E + VEK
Sbjct: 156 SADKLLHVKREFGFPNDFLVDLVPRYPEYFRLTGLPGEGKSFLELVNWNPEFAKSVVEKR 215
Query: 217 REKEYTEKWLSEFETKFAFPINFPTGFKIERGFREKLKNWQRLPYTKPYERKEGIRVRTC 276
E+E + + + +F + P GF +++ RE +++W L Y PYE +
Sbjct: 216 AEEESSA---TGIRVRPSFNVKLPPGFVLKKEMREWIRDWMELDYVSPYEDVSHFEQSS- 271
Query: 277 GGVQRYEKRAVAVLHELLSLTVEKMVEVDQLAHFRRDFAIEVNVRELLLTHPGIFYISTK 336
+ EKR+V V HELLSL++ K + V L F ++ H GIFY+S K
Sbjct: 272 ---REMEKRSVGVFHELLSLSLYKRIPVPILGKFCDEYRFSNAFSSAFTRHSGIFYLSLK 328
Query: 337 GKAQTVFLREAYSKGGLVEPNPVYTARRNMLDLILLGRR 375
G +T LREAY L+ +P+ + +L+ G R
Sbjct: 329 GGIETAMLREAYEGDKLIHIDPLLQIKDRFAELLNEGWR 367
>Medtr1g032040.1 | plant organelle RNA recognition domain protein |
HC | chr1:11336962-11338761 | 20130731
Length = 391
Score = 132 bits (332), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 97/339 (28%), Positives = 159/339 (46%), Gaps = 17/339 (5%)
Query: 46 RDPHLDNFMTHLKKLYLVLGFHNLMSNRKRGPFVSLQLMSRWRNILGLNVTVGSFLHKYP 105
+DP LD + K+ + N G + L+ + + R + L V + +FL++ P
Sbjct: 37 KDPSLDQAIEQDKRFKQCFRVVKEVLNEP-GQVIPLRYLEKRRQRMRLKVKIDTFLNQNP 95
Query: 106 HVFEVFAHPFR-RNPCCRFTRKMKELILL---ERVVVKELEMEAVKRVKKLLMMSVNGTL 161
+F+V+ + + +F R L+ E+ + KE E V ++ KLLMMS + +
Sbjct: 96 FLFDVYYDRIKPKTKPVKFLRVSDHLLQFLEEEKRIYKENEPLIVSKLCKLLMMSKDKVV 155
Query: 162 RVHALRLMRRELGLPQDFRDSILGKYSGDFRLVDL-----EVVALVGWDDELGTAQVEKW 216
L ++RE G P DF ++ +Y FRL L + LV W+ E + VEK
Sbjct: 156 SADKLLHVKREFGFPNDFLVDLVPRYPEYFRLTGLPGEGKSFLELVNWNPEFAKSVVEKR 215
Query: 217 REKEYTEKWLSEFETKFAFPINFPTGFKIERGFREKLKNWQRLPYTKPYERKEGIRVRTC 276
E+E + + + +F + P GF +++ RE +++W L Y PYE +
Sbjct: 216 AEEESSA---TGIRVRPSFNVKLPPGFVLKKEMREWIRDWMELDYVSPYEDVSHFEQSS- 271
Query: 277 GGVQRYEKRAVAVLHELLSLTVEKMVEVDQLAHFRRDFAIEVNVRELLLTHPGIFYISTK 336
+ EKR+V V HELLSL++ K + V L F ++ H GIFY+S K
Sbjct: 272 ---REMEKRSVGVFHELLSLSLYKRIPVPILGKFCDEYRFSNAFSSAFTRHSGIFYLSLK 328
Query: 337 GKAQTVFLREAYSKGGLVEPNPVYTARRNMLDLILLGRR 375
G +T LREAY L+ +P+ + +L+ G R
Sbjct: 329 GGIETAMLREAYEGDKLIHIDPLLQIKDRFAELLNEGWR 367
>Medtr1g019170.4 | plant organelle RNA recognition domain protein |
HC | chr1:5720388-5724512 | 20130731
Length = 416
Score = 132 bits (332), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 92/307 (29%), Positives = 148/307 (48%), Gaps = 28/307 (9%)
Query: 79 VSLQLMSRWRNILGLNVTVGSFLHKYPHVFEVFAHPFRRNPCCRFTRKMKELILLERVVV 138
+ +Q + + L L +++ KYP F+ F ++ T++M EL+ E+ +
Sbjct: 59 IPIQTLQKKFKTLDLQGKALNWISKYPSCFQ-----FHQDHVL-LTKRMMELVHEEQSLK 112
Query: 139 KELEMEAVKRVKKLLMMSVNGTLRVHALRLMRRELGLPQDFRDSILGKYSGDFRLVDLE- 197
LE V R+ KLLM+S+N L V + ++ LG P D+ I+ KY FR+ +
Sbjct: 113 DSLESVFVPRLAKLLMLSLNNCLNVMKINEIKNSLGFPDDYLIGIVAKYPDLFRIRNESG 172
Query: 198 -----VVALVGWDDELGTAQVEKWREKEYTEKWLSEFETKFAFPINFPTGFKIERGFREK 252
VV L+ W+ + ++VE K E F P+ + EK
Sbjct: 173 RRSSMVVELMKWNPDFAVSEVEALAMKNGVE---------VNFSCCLPSSWVKSL---EK 220
Query: 253 LKNWQRLPYTKPYERKEGIRVRTCGGVQRYEKRAVAVLHELLSLTVEKMVEVDQLAHFRR 312
++ +PY PY G+ G + EKR V ++HELLSLT+ K + + +L HF+R
Sbjct: 221 FHEFELVPYVSPYSDPRGL----VEGSKEMEKRNVGLVHELLSLTLWKKISIMKLGHFKR 276
Query: 313 DFAIEVNVRELLLTHPGIFYISTKGKAQTVFLREAYSKGGLVEPNPVYTARRNMLDLILL 372
+F + V LLL HPGIFY+S K + TV LRE Y LV+ +P+ + +++
Sbjct: 277 EFFLPDKVNVLLLKHPGIFYVSNKYRIYTVLLREGYVGSQLVDKDPLVVVKEKFGEIMQE 336
Query: 373 GRRKTKQ 379
G + Q
Sbjct: 337 GLHEYNQ 343
>Medtr1g019170.3 | plant organelle RNA recognition domain protein |
HC | chr1:5720163-5724512 | 20130731
Length = 416
Score = 132 bits (332), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 92/307 (29%), Positives = 148/307 (48%), Gaps = 28/307 (9%)
Query: 79 VSLQLMSRWRNILGLNVTVGSFLHKYPHVFEVFAHPFRRNPCCRFTRKMKELILLERVVV 138
+ +Q + + L L +++ KYP F+ F ++ T++M EL+ E+ +
Sbjct: 59 IPIQTLQKKFKTLDLQGKALNWISKYPSCFQ-----FHQDHVL-LTKRMMELVHEEQSLK 112
Query: 139 KELEMEAVKRVKKLLMMSVNGTLRVHALRLMRRELGLPQDFRDSILGKYSGDFRLVDLE- 197
LE V R+ KLLM+S+N L V + ++ LG P D+ I+ KY FR+ +
Sbjct: 113 DSLESVFVPRLAKLLMLSLNNCLNVMKINEIKNSLGFPDDYLIGIVAKYPDLFRIRNESG 172
Query: 198 -----VVALVGWDDELGTAQVEKWREKEYTEKWLSEFETKFAFPINFPTGFKIERGFREK 252
VV L+ W+ + ++VE K E F P+ + EK
Sbjct: 173 RRSSMVVELMKWNPDFAVSEVEALAMKNGVE---------VNFSCCLPSSWVKSL---EK 220
Query: 253 LKNWQRLPYTKPYERKEGIRVRTCGGVQRYEKRAVAVLHELLSLTVEKMVEVDQLAHFRR 312
++ +PY PY G+ G + EKR V ++HELLSLT+ K + + +L HF+R
Sbjct: 221 FHEFELVPYVSPYSDPRGL----VEGSKEMEKRNVGLVHELLSLTLWKKISIMKLGHFKR 276
Query: 313 DFAIEVNVRELLLTHPGIFYISTKGKAQTVFLREAYSKGGLVEPNPVYTARRNMLDLILL 372
+F + V LLL HPGIFY+S K + TV LRE Y LV+ +P+ + +++
Sbjct: 277 EFFLPDKVNVLLLKHPGIFYVSNKYRIYTVLLREGYVGSQLVDKDPLVVVKEKFGEIMQE 336
Query: 373 GRRKTKQ 379
G + Q
Sbjct: 337 GLHEYNQ 343
>Medtr1g019170.1 | plant organelle RNA recognition domain protein |
HC | chr1:5720173-5724512 | 20130731
Length = 416
Score = 132 bits (332), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 92/307 (29%), Positives = 148/307 (48%), Gaps = 28/307 (9%)
Query: 79 VSLQLMSRWRNILGLNVTVGSFLHKYPHVFEVFAHPFRRNPCCRFTRKMKELILLERVVV 138
+ +Q + + L L +++ KYP F+ F ++ T++M EL+ E+ +
Sbjct: 59 IPIQTLQKKFKTLDLQGKALNWISKYPSCFQ-----FHQDHVL-LTKRMMELVHEEQSLK 112
Query: 139 KELEMEAVKRVKKLLMMSVNGTLRVHALRLMRRELGLPQDFRDSILGKYSGDFRLVDLE- 197
LE V R+ KLLM+S+N L V + ++ LG P D+ I+ KY FR+ +
Sbjct: 113 DSLESVFVPRLAKLLMLSLNNCLNVMKINEIKNSLGFPDDYLIGIVAKYPDLFRIRNESG 172
Query: 198 -----VVALVGWDDELGTAQVEKWREKEYTEKWLSEFETKFAFPINFPTGFKIERGFREK 252
VV L+ W+ + ++VE K E F P+ + EK
Sbjct: 173 RRSSMVVELMKWNPDFAVSEVEALAMKNGVE---------VNFSCCLPSSWVKSL---EK 220
Query: 253 LKNWQRLPYTKPYERKEGIRVRTCGGVQRYEKRAVAVLHELLSLTVEKMVEVDQLAHFRR 312
++ +PY PY G+ G + EKR V ++HELLSLT+ K + + +L HF+R
Sbjct: 221 FHEFELVPYVSPYSDPRGL----VEGSKEMEKRNVGLVHELLSLTLWKKISIMKLGHFKR 276
Query: 313 DFAIEVNVRELLLTHPGIFYISTKGKAQTVFLREAYSKGGLVEPNPVYTARRNMLDLILL 372
+F + V LLL HPGIFY+S K + TV LRE Y LV+ +P+ + +++
Sbjct: 277 EFFLPDKVNVLLLKHPGIFYVSNKYRIYTVLLREGYVGSQLVDKDPLVVVKEKFGEIMQE 336
Query: 373 GRRKTKQ 379
G + Q
Sbjct: 337 GLHEYNQ 343
>Medtr1g019170.2 | plant organelle RNA recognition domain protein |
HC | chr1:5720163-5724512 | 20130731
Length = 416
Score = 132 bits (332), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 92/307 (29%), Positives = 148/307 (48%), Gaps = 28/307 (9%)
Query: 79 VSLQLMSRWRNILGLNVTVGSFLHKYPHVFEVFAHPFRRNPCCRFTRKMKELILLERVVV 138
+ +Q + + L L +++ KYP F+ F ++ T++M EL+ E+ +
Sbjct: 59 IPIQTLQKKFKTLDLQGKALNWISKYPSCFQ-----FHQDHVL-LTKRMMELVHEEQSLK 112
Query: 139 KELEMEAVKRVKKLLMMSVNGTLRVHALRLMRRELGLPQDFRDSILGKYSGDFRLVDLE- 197
LE V R+ KLLM+S+N L V + ++ LG P D+ I+ KY FR+ +
Sbjct: 113 DSLESVFVPRLAKLLMLSLNNCLNVMKINEIKNSLGFPDDYLIGIVAKYPDLFRIRNESG 172
Query: 198 -----VVALVGWDDELGTAQVEKWREKEYTEKWLSEFETKFAFPINFPTGFKIERGFREK 252
VV L+ W+ + ++VE K E F P+ + EK
Sbjct: 173 RRSSMVVELMKWNPDFAVSEVEALAMKNGVE---------VNFSCCLPSSWVKSL---EK 220
Query: 253 LKNWQRLPYTKPYERKEGIRVRTCGGVQRYEKRAVAVLHELLSLTVEKMVEVDQLAHFRR 312
++ +PY PY G+ G + EKR V ++HELLSLT+ K + + +L HF+R
Sbjct: 221 FHEFELVPYVSPYSDPRGL----VEGSKEMEKRNVGLVHELLSLTLWKKISIMKLGHFKR 276
Query: 313 DFAIEVNVRELLLTHPGIFYISTKGKAQTVFLREAYSKGGLVEPNPVYTARRNMLDLILL 372
+F + V LLL HPGIFY+S K + TV LRE Y LV+ +P+ + +++
Sbjct: 277 EFFLPDKVNVLLLKHPGIFYVSNKYRIYTVLLREGYVGSQLVDKDPLVVVKEKFGEIMQE 336
Query: 373 GRRKTKQ 379
G + Q
Sbjct: 337 GLHEYNQ 343
>Medtr6g043850.1 | plant organelle RNA recognition domain protein |
LC | chr6:15115306-15109090 | 20130731
Length = 664
Score = 132 bits (332), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 145/281 (51%), Gaps = 23/281 (8%)
Query: 100 FLHKYPHVFEVFAHPFRRNPCC-----RFTRKMKELILLERVVVKE--LEMEAVKRVKKL 152
F+ KYP VFE F + N C + T K +L E+ +V + + RV KL
Sbjct: 84 FIRKYPSVFEEFYN----NGCTFEPHVKLTAKAIDLNADEKFLVASDVFKKDVAVRVLKL 139
Query: 153 LMMSVNGTLRVHALRLMRRELGLPQDFRDSILGKYSGDFRLVDLE---VVALVGWDDELG 209
LM++ + + + ++ +LGLP D+ S++ ++ FR+V ++ V+ LV W +
Sbjct: 140 LMIAKGNKIPLSVVDGLKWDLGLPDDYVKSVIPEFPDHFRVVGVDNNAVLELVCWSKKHS 199
Query: 210 TAQVEKWREKEYTEKWLSEFETKFAFPINFPTGFKIERGFREKLKNWQRLPYTKPYERKE 269
+ + EK+Y +K + + + FP+ F TGF++++ + + +K W L Y PYE
Sbjct: 200 VS----FLEKKYGDKAKGQGK-ELGFPVQFSTGFEMDKKYEKWVKEWNGLRYVSPYENG- 253
Query: 270 GIRVRTCGGVQRYEKRAVAVLHELLSLTVEKMVEVDQLAHFRRDFAIEVNVRELLLTHPG 329
V G + +K V VLHE+L+L V K E D + + + ++L HPG
Sbjct: 254 ---VNLSGSSEESDKWVVGVLHEILNLLVSKKTEKDNVLMIGEWLGLASRFKRVILQHPG 310
Query: 330 IFYISTKGKAQTVFLREAYSKGGLVEPNPVYTARRNMLDLI 370
IFY+S+K + TV LR+ Y +G LVE NP RR + L+
Sbjct: 311 IFYVSSKNRMYTVVLRDGYKRGLLVEDNPAMEFRRRYIHLM 351
>Medtr0153s0070.1 | plant organelle RNA recognition domain protein |
HC | scaffold0153:36398-37624 | 20130731
Length = 373
Score = 129 bits (325), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 104/332 (31%), Positives = 158/332 (47%), Gaps = 67/332 (20%)
Query: 79 VSLQLMSRWRNILGLNVT--VGSFLHKYPHVFEVFAHPFRRNPC--CRFTRKMKELILLE 134
+ ++ +S +R + L + FL K P +FE++ RN C T+K + L+
Sbjct: 47 IPVRSLSHYRKQISLPKPHRISDFLRKTPKLFELYKD---RNGVLWCGLTQKAEVLMEEH 103
Query: 135 RVVVKELEMEAVKRVKKLLMMSVNGTLRVHALRLMRRELGLPQDFRDSILGKYSGDFRLV 194
+ V++E E +A + V +LLMMSV+ +++ + RR+ GLP DFR + KY FR+V
Sbjct: 104 KRVIEENEDKAAEYVTRLLMMSVDKRVQLDKIAHFRRDFGLPMDFRTHWVHKYPQLFRVV 163
Query: 195 -----DLEVVALVGWDDELGTAQVEKWR--------EKEYTEKWLSEFETKFAFPINFPT 241
D+E + LV W+ E ++EK E E+T LS FP+ FP
Sbjct: 164 KPSLDDVEFLELVSWNSEWAITEIEKKNKMIMEGVTETEHTPGLLS-----LPFPLKFPA 218
Query: 242 GFK-IERGFREKLKNWQRLPYTKPYERKEGIRVRTCGGVQRYEKRAVAVLHELLSLTVEK 300
FK + + EK+K +Q Y PY +G++ G ++KRAVAV+HELLS TVEK
Sbjct: 219 NFKRVHSYYGEKIKMFQERTYLSPYADAKGLK----PGSLEFDKRAVAVMHELLSFTVEK 274
Query: 301 MVEVDQLAHFRRDFAIEVNVRELLLTHPGIFYISTKGKAQTVFLREAYSKGGLVEPNPVY 360
+GK +VFL EAY L+E +P++
Sbjct: 275 -----------------------------------RGKRFSVFLTEAYEGSELIEKSPLF 299
Query: 361 TARRNMLDLILLGRRKTKQFLDCDSKSKEESN 392
R +L L+ G R K+ + DS S EE
Sbjct: 300 LWREKLLSLV--GYRGRKKKFEADSDSDEEGG 329
>Medtr1g072550.1 | plant organelle RNA recognition domain protein |
HC | chr1:32201119-32198282 | 20130731
Length = 393
Score = 129 bits (325), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 90/309 (29%), Positives = 149/309 (48%), Gaps = 16/309 (5%)
Query: 76 GPFVSLQLMSRWRNILGLNVTVGSFLHKYPHVFEVFAHPFR-RNPCCRFTRKMKELILL- 133
G + L+ + + R + L V + +FL++ P +F+V+ + + +F R L+
Sbjct: 66 GQVIPLRYLEKRRQRMRLKVKIDTFLNQNPFLFDVYYDRIKPKTEPVKFLRVSDHLLQFL 125
Query: 134 --ERVVVKELEMEAVKRVKKLLMMSVNGTLRVHALRLMRRELGLPQDFRDSILGKYSGDF 191
E+ + KE E V ++ KLLMMS + + L ++RE G P DF ++ +Y F
Sbjct: 126 QEEKRIYKENEPLIVSKLCKLLMMSKDKIVSADKLLHVKREFGFPNDFLVDLVPRYPEYF 185
Query: 192 RLVDL-----EVVALVGWDDELGTAQVEKWREKEYTEKWLSEFETKFAFPINFPTGFKIE 246
RL L + LV W+ E + +E+ E+E + + +F + P GF ++
Sbjct: 186 RLTGLPGEGKSFLELVNWNPEFAKSVIERRAEEESRA---TGIRVRPSFNVKLPPGFVLK 242
Query: 247 RGFREKLKNWQRLPYTKPYERKEGIRVRTCGGVQRYEKRAVAVLHELLSLTVEKMVEVDQ 306
+ RE +++W L Y PYE + + EKR+V V HELLSL++ K V V
Sbjct: 243 KEMREWIRDWMELDYVSPYEDVSHLE----QASREMEKRSVGVFHELLSLSLYKRVPVPI 298
Query: 307 LAHFRRDFAIEVNVRELLLTHPGIFYISTKGKAQTVFLREAYSKGGLVEPNPVYTARRNM 366
L F ++ H GIFY+S KG +T LREAY L++ +P+ +
Sbjct: 299 LGKFCDEYRFSNAFSSAFTRHSGIFYMSLKGGIETAMLREAYDGDKLIDIDPLLQIKDRF 358
Query: 367 LDLILLGRR 375
+L+ G R
Sbjct: 359 AELLKEGWR 367
>Medtr1g072550.2 | plant organelle RNA recognition domain protein |
HC | chr1:32201119-32199304 | 20130731
Length = 393
Score = 129 bits (325), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 90/309 (29%), Positives = 149/309 (48%), Gaps = 16/309 (5%)
Query: 76 GPFVSLQLMSRWRNILGLNVTVGSFLHKYPHVFEVFAHPFR-RNPCCRFTRKMKELILL- 133
G + L+ + + R + L V + +FL++ P +F+V+ + + +F R L+
Sbjct: 66 GQVIPLRYLEKRRQRMRLKVKIDTFLNQNPFLFDVYYDRIKPKTEPVKFLRVSDHLLQFL 125
Query: 134 --ERVVVKELEMEAVKRVKKLLMMSVNGTLRVHALRLMRRELGLPQDFRDSILGKYSGDF 191
E+ + KE E V ++ KLLMMS + + L ++RE G P DF ++ +Y F
Sbjct: 126 QEEKRIYKENEPLIVSKLCKLLMMSKDKIVSADKLLHVKREFGFPNDFLVDLVPRYPEYF 185
Query: 192 RLVDL-----EVVALVGWDDELGTAQVEKWREKEYTEKWLSEFETKFAFPINFPTGFKIE 246
RL L + LV W+ E + +E+ E+E + + +F + P GF ++
Sbjct: 186 RLTGLPGEGKSFLELVNWNPEFAKSVIERRAEEESRA---TGIRVRPSFNVKLPPGFVLK 242
Query: 247 RGFREKLKNWQRLPYTKPYERKEGIRVRTCGGVQRYEKRAVAVLHELLSLTVEKMVEVDQ 306
+ RE +++W L Y PYE + + EKR+V V HELLSL++ K V V
Sbjct: 243 KEMREWIRDWMELDYVSPYEDVSHLE----QASREMEKRSVGVFHELLSLSLYKRVPVPI 298
Query: 307 LAHFRRDFAIEVNVRELLLTHPGIFYISTKGKAQTVFLREAYSKGGLVEPNPVYTARRNM 366
L F ++ H GIFY+S KG +T LREAY L++ +P+ +
Sbjct: 299 LGKFCDEYRFSNAFSSAFTRHSGIFYMSLKGGIETAMLREAYDGDKLIDIDPLLQIKDRF 358
Query: 367 LDLILLGRR 375
+L+ G R
Sbjct: 359 AELLKEGWR 367
>Medtr3g030020.1 | plant organelle RNA recognition domain protein |
HC | chr3:9470357-9471627 | 20130731
Length = 373
Score = 129 bits (325), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 88/287 (30%), Positives = 141/287 (49%), Gaps = 28/287 (9%)
Query: 99 SFLHKYPHVFEVFAHPFRRNPCCRFTRKMKELILLERVVVKELEMEAVKRVKKLLMMSVN 158
+++ KYP F+ F ++ T++M EL+ E+ + LE V R+ KLLM S+N
Sbjct: 36 NWISKYPSCFQ-----FHQDHVL-LTKRMMELVHEEQSLKDSLESVFVPRLAKLLMFSLN 89
Query: 159 GTLRVHALRLMRRELGLPQDFRDSILGKYSGDFRL------VDLEVVALVGWDDELGTAQ 212
L V + ++ LG P D+ I+ KY FR+ + VV L+ W+ + ++
Sbjct: 90 NCLNVMKINEIKNSLGFPDDYLIGIVMKYPDLFRIRNESGRISSMVVELMKWNPDFSVSE 149
Query: 213 VEKWREKEYTEKWLSEFETKFAFPINFPTGFKIERGFREKLKNWQRLPYTKPYERKEGIR 272
V K E S + P ++ EK + ++ +PY PY G+
Sbjct: 150 VAALAMKNGVEVNFS-----YCLPSSWVKSL-------EKFREFELVPYVSPYSDPRGL- 196
Query: 273 VRTCGGVQRYEKRAVAVLHELLSLTVEKMVEVDQLAHFRRDFAIEVNVRELLLTHPGIFY 332
G + EKR V ++HELLSLT+ K + + +L HF+R+F + V LLL HPGIFY
Sbjct: 197 ---VEGSKEMEKRNVGLVHELLSLTLWKKISIMKLGHFKREFFLPDKVNVLLLKHPGIFY 253
Query: 333 ISTKGKAQTVFLREAYSKGGLVEPNPVYTARRNMLDLILLGRRKTKQ 379
+S K + TV LRE Y LV+ +P+ + +++ G + Q
Sbjct: 254 VSNKYRIYTVLLREGYVGSQLVDKDPLVVVKEKFGEIMQEGLHEYNQ 300
>Medtr1g098960.1 | plant organelle RNA recognition domain protein |
HC | chr1:44599463-44600719 | 20130731
Length = 418
Score = 126 bits (316), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 88/279 (31%), Positives = 137/279 (49%), Gaps = 28/279 (10%)
Query: 91 LGLNVTVGSFLHKYPHVFEVFAHPFRRNPCCRFTRKMKELILLERVVVKELEMEAVKRVK 150
L L +++ KYP F+ F ++ T++M +L+ E+ + LE V R+
Sbjct: 73 LDLQGKALNWISKYPSCFQ-----FHQDHVL-LTKRMMKLVHEEQSLKDSLESVFVLRLA 126
Query: 151 KLLMMSVNGTLRVHALRLMRRELGLPQDFRDSILGKYSGDFRLVDLE------VVALVGW 204
KLLM+S+N L V + ++ GLP D+ I+ KYS FR+ + VV L+ W
Sbjct: 127 KLLMLSLNNCLNVMKINEIKNSFGLPDDYLIGIVAKYSDLFRIRNESGRRSSMVVELMKW 186
Query: 205 DDELGTAQVEKWREKEYTEKWLSEFETKFAFPINFPTGFKIERGFREKLKNWQRLPYTKP 264
+ + ++VE K E F P+ + EK + ++ +PY P
Sbjct: 187 NPDFAVSEVEALAMKNGVE---------VNFSCCLPSSWVKSL---EKFREFELVPYVSP 234
Query: 265 YERKEGIRVRTCGGVQRYEKRAVAVLHELLSLTVEKMVEVDQLAHFRRDFAIEVNVRELL 324
Y R G + EKR + ++HELLSLT+ K + + +L HF+R+F + V LL
Sbjct: 235 YSDPR----RLVEGSKEMEKRNLGLVHELLSLTLWKKISIMKLGHFKREFFLPDKVNVLL 290
Query: 325 LTHPGIFYISTKGKAQTVFLREAYSKGGLVEPNPVYTAR 363
L H GIFY+S K + TV LRE Y LV+ NP+ +
Sbjct: 291 LKHHGIFYVSNKYRIYTVLLREGYVGSQLVDKNPLVAVK 329
>Medtr3g083350.1 | plant organelle RNA recognition domain protein |
HC | chr3:37619083-37621215 | 20130731
Length = 568
Score = 122 bits (305), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 94/347 (27%), Positives = 164/347 (47%), Gaps = 36/347 (10%)
Query: 45 VRDPHLDNFMTHLKKLYLVLGFHNLMSNRKRGPFVSLQLMSRWRNILGLNV--TVGSFLH 102
VRD LD + ++ V L+ ++ + F+ ++++S+ R L L+ ++ S +H
Sbjct: 57 VRDRTLDRHVVMRNRIRFVQKLKTLLLSKPKH-FLPIKILSKCRAYLSLHKPRSLLSMIH 115
Query: 103 KYPHVFEVFAHPFRRNP----------CCRFTRKMKELILLERVVVKELEMEAVKRVKKL 152
+YP +FE+F P+ P C R T L E + + +++KL
Sbjct: 116 RYPSIFELFTIPWPPTPLNATKLYPQLCVRLTPAAAALAAEELNLKSSISTVLANKLQKL 175
Query: 153 LMMSVNGTLRVHALRLMRRELGLPQDFRDSILGKYSGDFRLVDLE---VVALVGWDDELG 209
LM+S + L + L + +LGLP +FR + + F++VD + LV WD L
Sbjct: 176 LMLSSHRRLLLAKLVHLAPDLGLPPNFRSRLCNDHPDKFKIVDTSYGRALELVSWDTNLA 235
Query: 210 TAQVEKWREKEYTEKWLSEFETKFAFPINFPTGFKIERGFREKLKNWQRLPYTKPYER-- 267
+ + ++ + + KF + G ++R R+ L ++ +P PY
Sbjct: 236 KPLPPR---ESHSLDLIVDRPLKFK-QLRLRKGLNLKRPHRDYLLKFEEMPEVCPYNNPA 291
Query: 268 ----KEGIRVRTCGGVQRYEKRAVAVLHELLSLTVEKMVEVDQLAHFRRDFAIEVNVREL 323
KE I EKR AV+ E+L +T+EK +D L HFR++F + +R +
Sbjct: 292 ESSTKESIEA---------EKRCCAVIREVLGMTIEKRTLIDHLTHFRKEFGLPNKLRGM 342
Query: 324 LLTHPGIFYISTKGKAQTVFLREAYS-KGGLVEPNPVYTARRNMLDL 369
++ HP +FY S KG+ +VFL E + KG L+E + V + +DL
Sbjct: 343 IVRHPELFYTSLKGQRDSVFLVERFDEKGNLLEKDEVLALQDKWMDL 389
>Medtr4g053720.1 | plant organelle RNA recognition domain protein |
HC | chr4:19386178-19384121 | 20130731
Length = 357
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 101/352 (28%), Positives = 166/352 (47%), Gaps = 23/352 (6%)
Query: 24 LFHQRRWKKPTISAQTRLEDRVRDPHLDNFMTHLKKLYLVLGFHN-LMSNRKRGPFVSLQ 82
LFH+ + ++A+ + VRD +LD + K L V+ N ++S+ + +SL
Sbjct: 7 LFHRFDHIRTFVNARVKW---VRDDYLDTAVLKEKNLKHVISLKNHIVSSPSKS--LSLY 61
Query: 83 LMSRWRNILGLNVTVGSFLHKYPHVFEVFAHPFRRNPCCRFTRKMKELILLERVV--VKE 140
S + L L + + KY HVF F P + T + L E V +
Sbjct: 62 NASMLKASLNLPMITIKLVEKYHHVFMQFQPSPGLPPRIKLTAQALALHKEEMEVHNSRT 121
Query: 141 LEMEAVKRVKKLLMMSVNGTLRVHALRLMRRELGLPQDFRDSILGKYSGDFRLVDLE--- 197
+ +A +R+ +LLM++ L ++ + ++ ++GLP D+ ++L Y F + +E
Sbjct: 122 NQEDAAQRLARLLMLAGMARLPIYVIEKLKWDMGLPHDYVTTLLAYYPDYFDVCVVEDPL 181
Query: 198 ------VVALVGWDDELGTAQVEKWREKEYTEKWLSEFETKFAFPINFPTGFKIERGFRE 251
+ LV W EL +++EK R + + FP+ P F +E+ +
Sbjct: 182 SGKEVLALELVSWRKELSVSELEK-RVMGFNYD-ADKRRHDIQFPMFLPKSFALEKRVKT 239
Query: 252 KLKNWQRLPYTKPYERKEGIRVRTCGGVQRYEKRAVAVLHELLSLTVEKMVEVDQLAHFR 311
++ WQ LPY PYE + + + EK VA+LHELLSL V K E + L +
Sbjct: 240 WVEGWQTLPYISPYENAFHLDSNS----DQAEKWTVAILHELLSLLVSKKTESENLICYG 295
Query: 312 RDFAIEVNVRELLLTHPGIFYISTKGKAQTVFLREAYSKGGLVEPNPVYTAR 363
+ ++ L+ HPGIFY+S K + QT LREAY LV+ +PV R
Sbjct: 296 ECLGLGSRFKKALVHHPGIFYLSNKIRTQTAVLREAYRNEFLVKNHPVMGTR 347
>Medtr7g018630.1 | plant organelle RNA recognition domain protein |
HC | chr7:6083157-6084419 | 20130731
Length = 420
Score = 112 bits (280), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 104/378 (27%), Positives = 171/378 (45%), Gaps = 38/378 (10%)
Query: 46 RDPHLDNF--MTHLKKLYLVLGFHNLMSNRKRGPFVSLQLMSRWRNILGLNVTVGSFLHK 103
+D + D+ + H +L V+ N ++ G + + +S+ L + + V FL +
Sbjct: 53 KDSYYDSIEHIHHSIQLKPVIALKNCIAQDPNG-CIPISSVSKRGLQLDVPMKVARFLRQ 111
Query: 104 YPHVFEVFAHPFRRNPCCRFTRKMKELILLERVVVKELEMEAVKRVKKLLMMSVNGTLRV 163
YP +FE F P +P R T + E+ E+ V +E E R+KK+++M+ L +
Sbjct: 112 YPSIFEEFTGPKYNHPWFRLTPEAAEIDRDEKRVYEESREELRSRLKKMILMTKENVLPL 171
Query: 164 HALRLMRRELGLPQDFRDSILGKYSGDFRLVDLEVVALVGWDDELGTAQVEKWREKEYT- 222
++ M+ LGLP DF FR V++E D L +E RE+ Y+
Sbjct: 172 KIIQGMQWYLGLPHDFLQHHEQNLDDSFRFVEME--------DGLKGLAIES-RERVYSV 222
Query: 223 --EKWLSE---FETKFAFPINFPTGFKIERGFREKLKNW----QRLPYTKPYERKEGIRV 273
E + + ++ I FP + K++NW Q+LPY PY+ +
Sbjct: 223 MEENAMKKGMYYDGSQTEAIEFPFFPSKALRMKTKIENWLHEFQKLPYISPYDDFSNLDP 282
Query: 274 RTCGGVQRYEKRAVAVLHELLSLTVEKMVEVDQLAHFRRDFAIEVNVRELLLTHPGIFYI 333
+ EKR + VLHELLSL ++ E +L ++ F V HP +FY+
Sbjct: 283 NSDIA----EKRLIGVLHELLSLFIDHSAERRKLLCLKKYFGFPQKVHRAFERHPHMFYM 338
Query: 334 STKGKAQTVFLREAYSKGGLVEPNPVYTARRNMLDL------ILLGRRKTKQFLDCDSKS 387
S + K TV L+EAY +E +P+ + R+ + L IL RR +F + + K
Sbjct: 339 SMRNKTCTVILKEAYCNELAIENHPLLSVRKRYIKLMKESEVILRNRRMNSRFSNSE-KL 397
Query: 388 KEESNAVVYELDDEGVQR 405
ESN + DEG +
Sbjct: 398 DLESNDL-----DEGEHK 410
>Medtr3g074730.1 | plant organelle RNA recognition domain protein |
HC | chr3:33769164-33767587 | 20130731
Length = 404
Score = 105 bits (263), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 78/257 (30%), Positives = 128/257 (49%), Gaps = 30/257 (11%)
Query: 123 FTRKMKELILLERVVVKELEMEAVKRVKKLLMMSVNGTLRVHALRLMRRELGLPQDFRDS 182
FT M+EL+ E+ +++ +E++ V++V+KLLMMS + + + +R G+P DFRD
Sbjct: 136 FTDLMEELLAEEKSIMESMELDRVEKVRKLLMMSRFHRISLAKIHHVRNLFGIPDDFRDR 195
Query: 183 ILGKYSGDFRLVD---------LEVVALVGWDDELGTAQVEKWREKEYTEKWLSEFETK- 232
+ KY FR+VD + V+ LV WD L + +EK E ++E + K
Sbjct: 196 V-EKYPNYFRIVDDKNKDDGKKVRVLELVNWDPLLAVSAIEK-------EFMVNEDDAKR 247
Query: 233 -FAFPINFPTGFKIERGFRE--KLKNWQRLPYTKPYERKEGIRVRTCGGVQRYEKRAVAV 289
F FP+ G +E G + K+ LP PY V T EK V +
Sbjct: 248 KFTFPVK--HGKDLELGIEDERKMNLLNALPLVSPYSDGAKFDVWTLEA----EKYRVGL 301
Query: 290 LHELLSLTVEKMVEVDQLAHFRRDFAIEVNVRELLLTHPGIFYISTKGKAQTVFLREAYS 349
+HE LSLT+EK + L F+ +F++ + +L+ P FY++ VFL+E Y
Sbjct: 302 IHEFLSLTLEKRASIHHLVEFKEEFSLTKHTYHMLVKQPRAFYLAGTEMNWVVFLKEGYD 361
Query: 350 KGGLV---EPNPVYTAR 363
+ G++ +P V+ +
Sbjct: 362 RNGVLIHKDPQVVFNEK 378
>Medtr3g448960.1 | plant organelle RNA recognition domain protein |
HC | chr3:16485012-16487013 | 20130731
Length = 463
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 121/271 (44%), Gaps = 53/271 (19%)
Query: 99 SFLHKYPHVFEVFAHPFRRNPCCRFTRKMKELILLERVVVKELEMEAVKRVKKLLMMSVN 158
+++ KYP F+ F ++ T++M +L+ E+ + LE V R+ KLLM+S+N
Sbjct: 81 NWISKYPSCFQ-----FHQDHVL-LTKRMMKLVHEEQSLKDSLESVFVLRLAKLLMLSLN 134
Query: 159 GTLRVHALRLMRRELGLPQDFRDSILGKYSGDFRLVDLE------VVALVGWDDELGTAQ 212
L V + ++ GLP D+ I+ KYS FR+ + VV L+ W+ + ++
Sbjct: 135 NCLNVMKINEIKNSFGLPDDYLIGIVAKYSDLFRIRNESGRRSSMVVELMKWNPDFAVSE 194
Query: 213 VEKWREKEYTEKWLSEFETKFAFPINFPTGFKIERGFREKLKNWQRLPYTKPYERKEGIR 272
VE K E F P+ + EK + ++ +PY PY
Sbjct: 195 VEALAMKNGVE---------VNFSCCLPSSWVKS---LEKFREFELVPYVSPYSDPR--- 239
Query: 273 VRTCGGVQRYEKRAVAVLHELLSLTVEKMVEVDQLAHFRRDFAIEVNVRELLLTHPGIFY 332
R G + EKR + ++HELLSLT+ K + + +L HF++ G+F+
Sbjct: 240 -RLVEGSKEMEKRNLGLVHELLSLTLWKKISIMKLGHFKK----------------GVFF 282
Query: 333 ISTKGKAQTVFLREAYSKGGLVEPNPVYTAR 363
+RE Y LV+ NP+ +
Sbjct: 283 ---------CLIREGYVGSQLVDKNPLVAVK 304
>Medtr8g102038.1 | plant organelle RNA recognition domain protein |
HC | chr8:42900320-42901238 | 20130731
Length = 238
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 82/166 (49%), Gaps = 15/166 (9%)
Query: 144 EAVKRVKKLLMMSVNGTLRVHALRLMRRELGLPQDFRDSILGKYSGDFR-------LVDL 196
+A +R+ +LLM++ ++ + ++ ++GLP D+ ++L Y F L
Sbjct: 79 DAAQRLSRLLMLAGMARFPIYVIEKLKWDMGLPHDYVTTLLAHYPDYFDVCVVEDPLSGK 138
Query: 197 EVVAL--VGWDDELGTAQVEKWREKEYTEKWLSEFETKFAFPINFPTGFKIERGFREKLK 254
EV+AL V W EL +++EK R + FP+ P F +E+ + ++
Sbjct: 139 EVLALEFVLWRKELSVSELEK-RVMGFNYG-ADNRRYDIQFPMFLPKSFALEKRVKTWVE 196
Query: 255 NWQRLPYTKPYERKEGIRVRTCGGVQRYEKRAVAVLHELLSLTVEK 300
WQ LPY PYE + + + EK +VA+LHELLSL V K
Sbjct: 197 GWQTLPYISPYENAFHLDSNS----DQAEKWSVAILHELLSLLVSK 238