Miyakogusa Predicted Gene

Lj1g3v4058510.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4058510.1 tr|D1LUD0|D1LUD0_MEDTR PKS (Fragment) OS=Medicago
truncatula PE=2 SV=1,50.42,0.000000000000003,seg,NULL,CUFF.31806.1
         (407 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g088200.1 | phytochrome kinase substrate protein, putative...   232   6e-61

>Medtr7g088200.1 | phytochrome kinase substrate protein, putative |
           HC | chr7:34330690-34329194 | 20130731
          Length = 498

 Score =  232 bits (591), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 154/321 (47%), Positives = 173/321 (53%), Gaps = 61/321 (19%)

Query: 1   MDREKANKAFHGNLTPKPPTHLRD-----PSSVTPEKPITCQPXXXXXXXXXXXXXXISG 55
           M+R    K F  NL PK PT LRD      S +TP+KP                    + 
Sbjct: 1   MERTTTIKTFDCNLPPKSPTILRDIDASFSSYLTPQKP--------------------NN 40

Query: 56  RCRSTTIDDSNSELSIFDAHKYFNELANNDT-QKVTICXXXXXXXX---RVSPM------ 105
                 +DD  SELSIFDAHKYFNE  NND  QKVTI            RVSP+      
Sbjct: 41  HNHHHKLDDPTSELSIFDAHKYFNEGTNNDNIQKVTISSNNNNNNNNNSRVSPVVINVNN 100

Query: 106 ENERVIIPETARYSSASSSVDGYGGIRNYRARSFHAATPTASSEASWNSQQGLLSHPQGA 165
           E E ++IP+T RYSSASS +DGY  IRNYRARSFHAATPTASSEASWNSQQGLLSHP GA
Sbjct: 101 ETESIVIPDTTRYSSASS-MDGYANIRNYRARSFHAATPTASSEASWNSQQGLLSHPAGA 159

Query: 166 ISVSVRNPTXXXXXXXXXXXHRRTSLSKSNWLLRRKCPCSGKKSVQVEEKKKTLEPKINT 225
           ISV+++                ++SLSK NW LRRKCPC+GKKSVQV EKK T  PK N 
Sbjct: 160 ISVNIK---NPSNPNPNNSNKHKSSLSKPNWFLRRKCPCTGKKSVQVNEKKLTELPKNNI 216

Query: 226 IXXXXXXXXXXXXXXXXXXNQHHVHDQFTVTPNDWVTTDHAPNIVAAKSQRFQVQPHPIV 285
                                                 D   N V  KSQRFQ    P+V
Sbjct: 217 KIPSPISPPPPMNNNWINN-----------------NIDQTQNHVVTKSQRFQ----PVV 255

Query: 286 -TTVRVPFTDGFTFPVLNPNA 305
            TTVRVP+TDGFTFPVLNPN+
Sbjct: 256 TTTVRVPYTDGFTFPVLNPNS 276