Miyakogusa Predicted Gene
- Lj1g3v4047390.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v4047390.1 Non Characterized Hit- tr|B9STU6|B9STU6_RICCO
Mom(Plant), putative OS=Ricinus communis
GN=RCOM_05439,65.91,0.000000002,seg,NULL,CUFF.31898.1
(462 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr4g058650.1 | hypothetical protein | HC | chr4:21566239-2157... 202 6e-52
Medtr4g058650.2 | hypothetical protein | HC | chr4:21567087-2157... 189 4e-48
Medtr2g095030.2 | helicase MOM1 | HC | chr2:40583580-40568105 | ... 84 3e-16
Medtr2g095030.1 | helicase MOM1 | HC | chr2:40583548-40568105 | ... 84 4e-16
Medtr2g094980.1 | chromatin remodeling complex subunit | LC | ch... 70 4e-12
>Medtr4g058650.1 | hypothetical protein | HC |
chr4:21566239-21578734 | 20130731
Length = 1462
Score = 202 bits (514), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 148/361 (40%), Positives = 178/361 (49%), Gaps = 74/361 (20%)
Query: 105 KLKTKDARAYRTVFRRRSSRDCNEESNRGGNLTQXXXXXXXXXXXXXXXCLKGDSLDSKE 164
KL +D+R YR + + +DCN+E+++ T K SLD KE
Sbjct: 37 KLPIRDSRIYRAILTQPKRKDCNKETDKKDKSTPEDSNTGEDKIDESS---KEVSLDCKE 93
Query: 165 VTKDGILPPEEAETEDQSAKSGSSGHVKELSENNVAEGSAVPSDVATHETSGHVQELSEN 224
V +D ILP EE + D +S SS G +E S
Sbjct: 94 VFEDCILPSEEGKAMDMRTESSSS---------------------------GSAKEPSAK 126
Query: 225 NVAQGSPVPSDAATHETSGPVQELSENNVTQGLLVPSDAATHETSGASERVQSDCHREEE 284
GS V V S++ THETS ERVQSDCH E+E
Sbjct: 127 EATLGSAV--------------------------VQSNSTTHETSDIPERVQSDCH-EKE 159
Query: 285 ASRTLASRSSMLNENLSQKCAN---GENLIPCKRKRITGDKDSDVSATSADDEDCNLIVD 341
S+TLA R S NE+L +KC G+NL P KRK DK SDVS DDE+CNLIV+
Sbjct: 160 TSQTLAIRDSDSNESLIRKCVGNEKGQNLTPSKRKSTVVDKHSDVSPRVVDDENCNLIVN 219
Query: 342 ARSSRPFSKIVKTSESCSKRIRRISLSDMQRDQKKSMNNVDQLCSKSNGERLSTSNKEGN 401
+ +V+TS SKRIR I NNVDQ SKSN E+ T +KEG
Sbjct: 220 PDPEKLCCNVVETS-GPSKRIRGI-------------NNVDQHASKSNDEKSCTRSKEGK 265
Query: 402 SGDSGERPLVNGVETEKIRKAQRSLHLKLKPKIASLCEILLLPDNVKSMVENCLEYTMNN 461
SGD E+P N VE EKIR QRSLH LKP+IA LCEIL LPDNVKSM LEYTMNN
Sbjct: 266 SGDPVEKPQGNTVENEKIRTLQRSLHRSLKPEIAKLCEILHLPDNVKSMAGKFLEYTMNN 325
Query: 462 H 462
+
Sbjct: 326 Y 326
>Medtr4g058650.2 | hypothetical protein | HC |
chr4:21567087-21578705 | 20130731
Length = 1355
Score = 189 bits (480), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 120/226 (53%), Positives = 140/226 (61%), Gaps = 19/226 (8%)
Query: 241 TSGPVQELSENNVTQG-LLVPSDAATHETSGASERVQSDCHREEEASRTLASRSSMLNEN 299
+SG +E S T G +V S++ THETS ERVQSDCH E+E S+TLA R S NE+
Sbjct: 9 SSGSAKEPSAKEATLGSAVVQSNSTTHETSDIPERVQSDCH-EKETSQTLAIRDSDSNES 67
Query: 300 LSQKCAN---GENLIPCKRKRITGDKDSDVSATSADDEDCNLIVDARSSRPFSKIVKTSE 356
L +KC G+NL P KRK DK SDVS DDE+CNLIV+ + +V+TS
Sbjct: 68 LIRKCVGNEKGQNLTPSKRKSTVVDKHSDVSPRVVDDENCNLIVNPDPEKLCCNVVETS- 126
Query: 357 SCSKRIRRISLSDMQRDQKKSMNNVDQLCSKSNGERLSTSNKEGNSGDSGERPLVNGVET 416
SKRIR I NNVDQ SKSN E+ T +KEG SGD E+P N VE
Sbjct: 127 GPSKRIRGI-------------NNVDQHASKSNDEKSCTRSKEGKSGDPVEKPQGNTVEN 173
Query: 417 EKIRKAQRSLHLKLKPKIASLCEILLLPDNVKSMVENCLEYTMNNH 462
EKIR QRSLH LKP+IA LCEIL LPDNVKSM LEYTMNN+
Sbjct: 174 EKIRTLQRSLHRSLKPEIAKLCEILHLPDNVKSMAGKFLEYTMNNY 219
>Medtr2g095030.2 | helicase MOM1 | HC | chr2:40583580-40568105 |
20130731
Length = 2096
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 78/231 (33%), Positives = 113/231 (48%), Gaps = 49/231 (21%)
Query: 156 KGDSLDSKEVTKDGILPPEEAETED------------QSAKSGSSG-HVKELSENNVAEG 202
KG D++EV+K+G LP E+ + ++ QS S G + ELS+ + ++
Sbjct: 303 KGSCSDNEEVSKNGTLPFEDGKAKETRVDSRTDEPRCQSKADNSIGAKIDELSKGSCSDN 362
Query: 203 SAVPSDVATHETSGHVQELSENNVAQGSPVPSDAATHET------SGPVQELSENNVTQG 256
+E+S+N G+ DA ET SGP+ +L+EN T G
Sbjct: 363 ----------------KEVSKN----GTLTSEDAKAKETRVNSRLSGPMTDLAENCATPG 402
Query: 257 LLVPSDAATHETSGASERVQSDCHREEEASRTLASRSSMLNE----NLSQKCANGENLIP 312
+PS+ T+ETS RVQ DC EE TL S S+ ++ N + GE L P
Sbjct: 403 SFIPSNTPTYETSVVPRRVQPDCCGEETLP-TLVSGDSVFDDDDLVNNNAGLGGGEKLAP 461
Query: 313 CKRKRITGDKDSDVSATSADDEDCNLIVDARSSRPFSKIVKTSESCSKRIR 363
KRK IT D DS+V ++ + + NLI DA S+ + +ESCSKRIR
Sbjct: 462 SKRKAITMDIDSNVPSSLSKGDSSNLIPDALPSK-----LGGNESCSKRIR 507
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/92 (51%), Positives = 58/92 (63%), Gaps = 4/92 (4%)
Query: 375 KKSMNNVDQLCSKSNGERLSTSNKEGNSGDSGERPLVNG-VETEK---IRKAQRSLHLKL 430
K S NNVDQ SKS GE+L K G D ++P N VE+ K + RSLHL L
Sbjct: 986 KVSNNNVDQPSSKSVGEKLPNGIKAGTFVDLVDKPQGNDDVESGKNGRVHDELRSLHLSL 1045
Query: 431 KPKIASLCEILLLPDNVKSMVENCLEYTMNNH 462
KP+I LCE+LLLPDNV+++V+N LEY N H
Sbjct: 1046 KPQITELCEVLLLPDNVRNVVDNFLEYVTNKH 1077
>Medtr2g095030.1 | helicase MOM1 | HC | chr2:40583548-40568105 |
20130731
Length = 2089
Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 78/231 (33%), Positives = 113/231 (48%), Gaps = 49/231 (21%)
Query: 156 KGDSLDSKEVTKDGILPPEEAETED------------QSAKSGSSG-HVKELSENNVAEG 202
KG D++EV+K+G LP E+ + ++ QS S G + ELS+ + ++
Sbjct: 303 KGSCSDNEEVSKNGTLPFEDGKAKETRVDSRTDEPRCQSKADNSIGAKIDELSKGSCSDN 362
Query: 203 SAVPSDVATHETSGHVQELSENNVAQGSPVPSDAATHET------SGPVQELSENNVTQG 256
+E+S+N G+ DA ET SGP+ +L+EN T G
Sbjct: 363 ----------------KEVSKN----GTLTSEDAKAKETRVNSRLSGPMTDLAENCATPG 402
Query: 257 LLVPSDAATHETSGASERVQSDCHREEEASRTLASRSSMLNE----NLSQKCANGENLIP 312
+PS+ T+ETS RVQ DC EE TL S S+ ++ N + GE L P
Sbjct: 403 SFIPSNTPTYETSVVPRRVQPDCCGEETLP-TLVSGDSVFDDDDLVNNNAGLGGGEKLAP 461
Query: 313 CKRKRITGDKDSDVSATSADDEDCNLIVDARSSRPFSKIVKTSESCSKRIR 363
KRK IT D DS+V ++ + + NLI DA S+ + +ESCSKRIR
Sbjct: 462 SKRKAITMDIDSNVPSSLSKGDSSNLIPDALPSK-----LGGNESCSKRIR 507
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/92 (48%), Positives = 57/92 (61%), Gaps = 11/92 (11%)
Query: 375 KKSMNNVDQLCSKSNGERLSTSNKEGNSGDSGERPLVNG-VETEK---IRKAQRSLHLKL 430
K S NNVDQ SKS GE+L +G ++P N VE+ K + RSLHL L
Sbjct: 986 KVSNNNVDQPSSKSVGEKLP-------NGIKADKPQGNDDVESGKNGRVHDELRSLHLSL 1038
Query: 431 KPKIASLCEILLLPDNVKSMVENCLEYTMNNH 462
KP+I LCE+LLLPDNV+++V+N LEY N H
Sbjct: 1039 KPQITELCEVLLLPDNVRNVVDNFLEYVTNKH 1070
>Medtr2g094980.1 | chromatin remodeling complex subunit | LC |
chr2:40555429-40554151 | 20130731
Length = 189
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/54 (59%), Positives = 40/54 (74%), Gaps = 3/54 (5%)
Query: 412 NGVETEK---IRKAQRSLHLKLKPKIASLCEILLLPDNVKSMVENCLEYTMNNH 462
N VE+EK + R LH+ LKP++ LCE+LLLPDNVK+MV+N LEY MNNH
Sbjct: 23 NDVESEKNGRVHNESRGLHVSLKPQMTKLCEVLLLPDNVKTMVDNFLEYVMNNH 76