Miyakogusa Predicted Gene

Lj1g3v4027080.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4027080.1 Non Characterized Hit- tr|I1INQ4|I1INQ4_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,33.22,2e-18,coiled-coil,NULL; seg,NULL,CUFF.31785.1
         (288 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g087450.1 | RNA polymerase II-binding domain protein | HC ...   219   3e-57
Medtr7g087450.2 | RNA polymerase II-binding domain protein | HC ...   219   3e-57
Medtr6g027180.1 | RNA polymerase II-binding domain protein | HC ...   174   7e-44
Medtr6g027180.2 | RNA polymerase II-binding domain protein | HC ...   174   7e-44
Medtr3g087840.1 | ENTH/VHS family protein | HC | chr3:39807660-3...    53   4e-07

>Medtr7g087450.1 | RNA polymerase II-binding domain protein | HC |
           chr7:34034205-34026117 | 20130731
          Length = 489

 Score =  219 bits (557), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 143/288 (49%), Positives = 158/288 (54%), Gaps = 28/288 (9%)

Query: 1   MEQLENAGAARASLLSQLKDALQEQESRQEHVHAQLQVVRDQIEKAAGIKKRLNQAAEAT 60
           MEQLE+A AARASLLSQLKDALQE ES+QEHV AQL +VR QIEK AGI+K LNQ  EAT
Sbjct: 218 MEQLEHAEAARASLLSQLKDALQEHESKQEHVRAQLLIVRGQIEKTAGIRKWLNQTTEAT 277

Query: 61  FPSVXXXXXXXXXXXXXXXXXFAPSRXXXXXXXXXXXXXXXXXXXXXXXXXQMLTSVLSS 120
            PSV                 F+P +                         QML SVLSS
Sbjct: 278 HPSVQLNGTTSQPTCAQPSMSFSPFQ-TSEEDNKKAAAAVAAKLAGSSSSAQMLASVLSS 336

Query: 121 LVAEEAASMKGSLNSTGFTSGLPAFNQDKRQKLEKPAPVSDVNNSSDMANSSFYANLQQ- 179
           L AEEAA       S GF+SGLP FN +KRQK+EK +PVSDV NSSDMA+SSF+  +QQ 
Sbjct: 337 LAAEEAA-------SKGFSSGLPIFNPEKRQKIEKSSPVSDV-NSSDMASSSFFTTIQQP 388

Query: 180 --------PSTNMQNMSQANHLQAAFTSAPPPMPHSSANQPYGQSTGMMAGGIPYGYGSN 231
                   PS NMQ MSQAN LQAAF SAP P P       Y QSTG M GGIPYGY SN
Sbjct: 389 SLTNPQVAPSNNMQIMSQANQLQAAFASAPLP-PQ------YVQSTGFMDGGIPYGYVSN 441

Query: 232 SXXXXXXXXXH---VXXXXXXXXXXXXXXXXXXXXXFYRPSGMGFYGQ 276
           +             V                     FYRP G+GFYGQ
Sbjct: 442 NLPPPPPPPFPPHAVTGLSMPSTQPAQQQQQSSPGGFYRPPGIGFYGQ 489


>Medtr7g087450.2 | RNA polymerase II-binding domain protein | HC |
           chr7:34032142-34026117 | 20130731
          Length = 377

 Score =  219 bits (557), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 143/288 (49%), Positives = 158/288 (54%), Gaps = 28/288 (9%)

Query: 1   MEQLENAGAARASLLSQLKDALQEQESRQEHVHAQLQVVRDQIEKAAGIKKRLNQAAEAT 60
           MEQLE+A AARASLLSQLKDALQE ES+QEHV AQL +VR QIEK AGI+K LNQ  EAT
Sbjct: 106 MEQLEHAEAARASLLSQLKDALQEHESKQEHVRAQLLIVRGQIEKTAGIRKWLNQTTEAT 165

Query: 61  FPSVXXXXXXXXXXXXXXXXXFAPSRXXXXXXXXXXXXXXXXXXXXXXXXXQMLTSVLSS 120
            PSV                 F+P +                         QML SVLSS
Sbjct: 166 HPSVQLNGTTSQPTCAQPSMSFSPFQ-TSEEDNKKAAAAVAAKLAGSSSSAQMLASVLSS 224

Query: 121 LVAEEAASMKGSLNSTGFTSGLPAFNQDKRQKLEKPAPVSDVNNSSDMANSSFYANLQQ- 179
           L AEEAA       S GF+SGLP FN +KRQK+EK +PVSDV NSSDMA+SSF+  +QQ 
Sbjct: 225 LAAEEAA-------SKGFSSGLPIFNPEKRQKIEKSSPVSDV-NSSDMASSSFFTTIQQP 276

Query: 180 --------PSTNMQNMSQANHLQAAFTSAPPPMPHSSANQPYGQSTGMMAGGIPYGYGSN 231
                   PS NMQ MSQAN LQAAF SAP P P       Y QSTG M GGIPYGY SN
Sbjct: 277 SLTNPQVAPSNNMQIMSQANQLQAAFASAPLP-PQ------YVQSTGFMDGGIPYGYVSN 329

Query: 232 SXXXXXXXXXH---VXXXXXXXXXXXXXXXXXXXXXFYRPSGMGFYGQ 276
           +             V                     FYRP G+GFYGQ
Sbjct: 330 NLPPPPPPPFPPHAVTGLSMPSTQPAQQQQQSSPGGFYRPPGIGFYGQ 377


>Medtr6g027180.1 | RNA polymerase II-binding domain protein | HC |
           chr6:9201234-9212785 | 20130731
          Length = 542

 Score =  174 bits (442), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 123/247 (49%), Positives = 143/247 (57%), Gaps = 19/247 (7%)

Query: 3   QLENAGAARASLLSQLKDALQEQESRQEHVHAQLQVVRDQIEKAAGIKKRLNQAAEA--- 59
           QLEN  A RA+LLSQLK+ALQEQESRQE VH++LQ  RD IE+ A I+KR +QA E    
Sbjct: 230 QLENTEAIRATLLSQLKEALQEQESRQELVHSRLQAARDHIEQVASIRKRFSQAPETTRV 289

Query: 60  ---TFPSVXXXXXXXXXXXXXXXXXFAPSRXXXXXXXXXXXXXXXXXXXXXXXXXQMLTS 116
              T PSV                 FAP +                          MLTS
Sbjct: 290 PEQTTPSVQLNSTPPPPSFTQPTMSFAPLQTTEDDKKAAAAAVAARLTASTSSAL-MLTS 348

Query: 117 VLSSLVAEEAASMKGSLNSTGFTSGLPAFNQDKRQKLEKPAPVSDVNNSSDMANSSFYAN 176
           +LSSLVAEEAAS  GSLNS  F S  P F+ +KR KLE+  PVSDV NSSD  +SSF+A 
Sbjct: 349 ILSSLVAEEAASKNGSLNSAEFNSAPPGFHPEKRPKLEQQMPVSDV-NSSDTGSSSFFAT 407

Query: 177 LQQPST--------NMQNMSQANHLQAAFTSAPPPMPHSSAN---QPYGQSTGMMAGGIP 225
            QQ S+        +MQ++SQ N LQ AF SAPPP PHS  N     Y QS GMM GG+P
Sbjct: 408 FQQSSSANMPLTPPSMQSISQTNQLQGAFASAPPPPPHSHMNPQANQYVQSAGMMVGGVP 467

Query: 226 YGYGSNS 232
           YGYGSN+
Sbjct: 468 YGYGSNN 474


>Medtr6g027180.2 | RNA polymerase II-binding domain protein | HC |
           chr6:9202019-9212786 | 20130731
          Length = 542

 Score =  174 bits (442), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 123/247 (49%), Positives = 143/247 (57%), Gaps = 19/247 (7%)

Query: 3   QLENAGAARASLLSQLKDALQEQESRQEHVHAQLQVVRDQIEKAAGIKKRLNQAAEA--- 59
           QLEN  A RA+LLSQLK+ALQEQESRQE VH++LQ  RD IE+ A I+KR +QA E    
Sbjct: 230 QLENTEAIRATLLSQLKEALQEQESRQELVHSRLQAARDHIEQVASIRKRFSQAPETTRV 289

Query: 60  ---TFPSVXXXXXXXXXXXXXXXXXFAPSRXXXXXXXXXXXXXXXXXXXXXXXXXQMLTS 116
              T PSV                 FAP +                          MLTS
Sbjct: 290 PEQTTPSVQLNSTPPPPSFTQPTMSFAPLQTTEDDKKAAAAAVAARLTASTSSAL-MLTS 348

Query: 117 VLSSLVAEEAASMKGSLNSTGFTSGLPAFNQDKRQKLEKPAPVSDVNNSSDMANSSFYAN 176
           +LSSLVAEEAAS  GSLNS  F S  P F+ +KR KLE+  PVSDV NSSD  +SSF+A 
Sbjct: 349 ILSSLVAEEAASKNGSLNSAEFNSAPPGFHPEKRPKLEQQMPVSDV-NSSDTGSSSFFAT 407

Query: 177 LQQPST--------NMQNMSQANHLQAAFTSAPPPMPHSSAN---QPYGQSTGMMAGGIP 225
            QQ S+        +MQ++SQ N LQ AF SAPPP PHS  N     Y QS GMM GG+P
Sbjct: 408 FQQSSSANMPLTPPSMQSISQTNQLQGAFASAPPPPPHSHMNPQANQYVQSAGMMVGGVP 467

Query: 226 YGYGSNS 232
           YGYGSN+
Sbjct: 468 YGYGSNN 474


>Medtr3g087840.1 | ENTH/VHS family protein | HC |
           chr3:39807660-39811898 | 20130731
          Length = 533

 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 40/54 (74%)

Query: 1   MEQLENAGAARASLLSQLKDALQEQESRQEHVHAQLQVVRDQIEKAAGIKKRLN 54
           +E+L+     R +L+SQLK+AL EQES  E+V  Q+QV + QIE+A+ ++KRL+
Sbjct: 246 IEKLKLVEENRVALVSQLKEALHEQESDLENVRTQMQVAQAQIEEASNMQKRLD 299