Miyakogusa Predicted Gene

Lj1g3v4012920.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4012920.1 tr|G7L2N3|G7L2N3_MEDTR F-box protein SKIP24
OS=Medicago truncatula GN=MTR_7g087170 PE=4
SV=1,49.31,2e-18,F-box-like,NULL; F-box domain,F-box domain,
cyclin-like; seg,NULL; no description,NULL,CUFF.31777.1
         (204 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g087140.1 | F-box SKIP24-like protein | HC | chr7:33934738...   245   3e-65
Medtr7g087170.1 | F-box protein SKIP2 | LC | chr7:33942919-33942...    91   7e-19
Medtr7g087330.1 | F-box protein SKIP24 | HC | chr7:33939109-3393...    68   7e-12

>Medtr7g087140.1 | F-box SKIP24-like protein | HC |
           chr7:33934738-33933323 | 20130731
          Length = 241

 Score =  245 bits (625), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 125/189 (66%), Positives = 144/189 (76%), Gaps = 3/189 (1%)

Query: 13  MSSLPEELWRRILEIGVESSGFTYKDLCCISISCRRFHRLSSDDSLWNXXXXXXXXXXXX 72
           MSSLP ELW +ILEIG++  G +YKDLCCISISCR  HRLS +DSLWN            
Sbjct: 1   MSSLPIELWTKILEIGIQDCGLSYKDLCCISISCRLLHRLSVEDSLWNRLLSSDFPSSST 60

Query: 73  XXXXXXXXXXXXXYKLRFERDKERRIAAHKRVVLRKESQVAEHSRKLRNIQTRVAEESIK 132
                        YKLRFERDKER+IAAH+RVVLRKESQ+ EHSR+L +IQT V++E +K
Sbjct: 61  SSSSSSSKSL---YKLRFERDKERKIAAHRRVVLRKESQILEHSRRLHDIQTCVSQEKLK 117

Query: 133 AGETAVELSSLRRIRQASVALNVWQPEVVRGRQKQMVEQCAVPAESRIHALEMELRLCKQ 192
           A +T+ ELS LRR+R+ASVALNVWQPEVVRGRQKQMVEQC VPAESRI  LEMELRLCKQ
Sbjct: 118 AIQTSTELSHLRRVREASVALNVWQPEVVRGRQKQMVEQCVVPAESRIRTLEMELRLCKQ 177

Query: 193 QIMGLEKYH 201
            I+GLEK +
Sbjct: 178 HILGLEKSY 186


>Medtr7g087170.1 | F-box protein SKIP2 | LC | chr7:33942919-33942396
           | 20130731
          Length = 135

 Score = 90.9 bits (224), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 62/144 (43%), Positives = 74/144 (51%), Gaps = 18/144 (12%)

Query: 13  MSSLPEELWRRILEIGVESSGFTYKDLCCISISCRRFHRLSSDDSLWNXXXXXXXXXXXX 72
           MSSLPEELW RILEIG+E S  +YKDLCCISISC   HRLSSDDSLWN            
Sbjct: 1   MSSLPEELWSRILEIGIEKSSLSYKDLCCISISCHLLHRLSSDDSLWN---GLISSDFPS 57

Query: 73  XXXXXXXXXXXXXYKLRFERDKER-----RIAAHKRVVLRKESQVAEHSRKLRNIQTRVA 127
                        YKLR ER+KER     RI  H          ++ H++   +   R +
Sbjct: 58  SSASSLASSSKSLYKLRLEREKERLSHMARITYH---------YISCHNQSFNDRLCRWS 108

Query: 128 -EESIKAGETAVELSSLRRIRQAS 150
             ESI   ET   LSS+   R+ +
Sbjct: 109 RRESITVHETEEVLSSVGGKRETT 132


>Medtr7g087330.1 | F-box protein SKIP24 | HC |
           chr7:33939109-33938544 | 20130731
          Length = 103

 Score = 67.8 bits (164), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 40/55 (72%), Gaps = 11/55 (20%)

Query: 148 QASVALNVWQPEVVRGRQKQMVEQCAVPAESRIHALEMELRLCKQQIMGLEKYHV 202
           +ASVALNVWQPEVVRGRQKQMVEQC            ME RLC Q+++GLEK ++
Sbjct: 6   EASVALNVWQPEVVRGRQKQMVEQCG-----------MEHRLCTQRVLGLEKSYM 49