Miyakogusa Predicted Gene

Lj1g3v3992540.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3992540.1 tr|Q2A0L6|Q2A0L6_MAIZE WOX9B protein (Fragment)
OS=Zea mays GN=wox9B PE=2 SV=1,71.67,1e-18,seg,NULL;
Homeobox,Homeodomain; HOMEOBOX_2,Homeodomain; SUBFAMILY NOT
NAMED,NULL; FAMILY NOT NAMED,N,CUFF.31747.1
         (282 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g086940.1 | wuschel-related homeobox protein | HC | chr7:3...   263   1e-70
Medtr6g027390.1 | wuschel-related homeobox protein | HC | chr6:9...   130   1e-30
Medtr2g015000.1 | wuschel homeobox protein | HC | chr2:4393059-4...    96   3e-20
Medtr7g025010.1 | wuschel-related homeobox protein, putative | L...    94   1e-19
Medtr4g088070.1 | wuschel homeobox protein | LC | chr4:34685878-...    87   1e-17
Medtr4g088080.1 | wuschel homeobox protein | LC | chr4:34693672-...    86   5e-17
Medtr4g084550.1 | wuschel-related homeobox protein | HC | chr4:3...    62   7e-10
Medtr8g107210.1 | stenofolia-like protein | HC | chr8:45305362-4...    62   9e-10
Medtr5g021930.1 | wuschel-related homeobox protein | HC | chr5:8...    57   3e-08
Medtr1g115315.1 | wuschel-related homeobox protein | HC | chr1:5...    56   4e-08
Medtr7g060630.1 | wuschel-related homeobox protein | HC | chr7:2...    56   4e-08
Medtr1g115315.2 | wuschel-related homeobox protein | HC | chr1:5...    55   5e-08
Medtr5g081990.1 | wuschel-related homeobox protein | HC | chr5:3...    55   7e-08
Medtr4g063735.1 | wuschel-related homeobox protein | HC | chr4:2...    54   2e-07
Medtr1g019130.2 | wuschel-related homeobox protein | HC | chr1:5...    54   2e-07
Medtr3g115620.1 | wuschel-related homeobox protein | HC | chr3:5...    53   3e-07
Medtr1g019130.1 | wuschel-related homeobox protein | HC | chr1:5...    53   3e-07
Medtr7g023810.1 | homeodomain protein HB2 | HC | chr7:7798636-77...    50   3e-06

>Medtr7g086940.1 | wuschel-related homeobox protein | HC |
           chr7:33813041-33816667 | 20130731
          Length = 272

 Score =  263 bits (672), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 154/283 (54%), Positives = 180/283 (63%), Gaps = 14/283 (4%)

Query: 1   MEDHQGQKDPNTKNNNAPSPHHGCSSEKSEPVRSRWTPKPEQILILESIFNSGMVNPPKD 60
           MED   Q DP    NN P+ H    SEK+EPVRSRWTPKPEQILILESIFNSGMVNPPK+
Sbjct: 1   MEDKM-QHDPP---NNTPTQH---GSEKTEPVRSRWTPKPEQILILESIFNSGMVNPPKE 53

Query: 61  ETVRIRKLLEKFGTVGDANVFYWFQNXXXXXXXXXXXMQ-ASLVEXXXXXXXXXXXXXXX 119
           ET++IRKLLEKFG VGDANVFYWFQN           MQ A+L +               
Sbjct: 54  ETIKIRKLLEKFGNVGDANVFYWFQNRRSRSRRRQRQMQQATLDQQRNQMAMMQPQQVVN 113

Query: 120 EGAPAAASAIPCDQAQGHPNLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDGYFSLSP 179
           +GA    SAIPCD  Q +P +                              +DG FS+S 
Sbjct: 114 DGA----SAIPCDMVQTNPTMVFGGSSSCLNDSSGSSSSSCGGVLSGQQG-MDGLFSVSS 168

Query: 180 QMGYPGIDQSFAASSLVYPPVAPNLNYQSGYEG-SNVSGYITVFINGIATELQGGLIDMK 238
           QMG+ G+DQ+ AA SL+ P ++PN NY SG+ G S V+G  TVFINGIATE+Q G +D+K
Sbjct: 169 QMGFLGVDQTLAAPSLLCPSLSPNFNYHSGFGGASTVTGLATVFINGIATEIQAGPLDIK 228

Query: 239 TMFGEDVMLVHSSGVPVPTNEFGFLMQSLQHGESYILVPKAPQ 281
           T+FGEDVMLVHSSGVPVPTNE G L+QSL HGESY LV K+ Q
Sbjct: 229 TVFGEDVMLVHSSGVPVPTNEHGILIQSLHHGESYFLVSKSAQ 271


>Medtr6g027390.1 | wuschel-related homeobox protein | HC |
           chr6:9379269-9376397 | 20130731
          Length = 300

 Score =  130 bits (328), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 61/75 (81%), Positives = 62/75 (82%)

Query: 27  EKSEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGTVGDANVFYWFQN 86
           EKSE VRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFG VGDANVFYWFQN
Sbjct: 24  EKSETVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGAVGDANVFYWFQN 83

Query: 87  XXXXXXXXXXXMQAS 101
                      MQA+
Sbjct: 84  RRSRSRRRQRQMQAA 98



 Score =  116 bits (290), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 69/109 (63%), Positives = 80/109 (73%), Gaps = 5/109 (4%)

Query: 178 SPQMGYPGIDQSFAASSLVYPPV-APNLNYQSGYEG---SNVSGYITVFINGIATEL-QG 232
           S Q+  P ++ + AASS++ P   A N NY  G  G   SNVSG ITVFING+ TE+ +G
Sbjct: 191 STQINLPQMENTSAASSIMQPSDHASNFNYYPGGIGYGGSNVSGVITVFINGVPTEMPRG 250

Query: 233 GLIDMKTMFGEDVMLVHSSGVPVPTNEFGFLMQSLQHGESYILVPKAPQ 281
             IDMKTMFGEDV+LVHSSGV VPTNEFGFLMQ+LQHGESY LV K  Q
Sbjct: 251 TAIDMKTMFGEDVILVHSSGVSVPTNEFGFLMQNLQHGESYYLVSKQAQ 299


>Medtr2g015000.1 | wuschel homeobox protein | HC |
           chr2:4393059-4395325 | 20130731
          Length = 457

 Score = 96.3 bits (238), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 42/64 (65%), Positives = 50/64 (78%), Gaps = 1/64 (1%)

Query: 23  GCSSEKSEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGTVGDANVFY 82
           GC     EP + RW PKPEQI ILE+IFNSGMVNPP++E  +IR  L+++G VGDANVFY
Sbjct: 44  GCEERSPEP-KPRWNPKPEQIRILEAIFNSGMVNPPREEIRKIRAQLQEYGQVGDANVFY 102

Query: 83  WFQN 86
           WFQN
Sbjct: 103 WFQN 106



 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 42/68 (61%)

Query: 215 VSGYITVFINGIATELQGGLIDMKTMFGEDVMLVHSSGVPVPTNEFGFLMQSLQHGESYI 274
           V+    VFIN +A E+  G  +++  FG+D +LVH +G PV TN++G  + SLQHG  Y 
Sbjct: 345 VAAKSVVFINDVAFEVASGPFNVRAAFGDDAVLVHQTGQPVLTNQYGVTLHSLQHGALYY 404

Query: 275 LVPKAPQE 282
           LV    +E
Sbjct: 405 LVSTCRKE 412


>Medtr7g025010.1 | wuschel-related homeobox protein, putative | LC
          | chr7:8283410-8286927 | 20130731
          Length = 590

 Score = 94.4 bits (233), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 40/64 (62%), Positives = 51/64 (79%)

Query: 23 GCSSEKSEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGTVGDANVFY 82
          G   E++   + RW PKP+QI ILE+IFNSGMVNPP++E  +IR+ L++FG VGDANVFY
Sbjct: 35 GDGEERTPEPKPRWNPKPQQIRILEAIFNSGMVNPPREEITKIREQLQEFGQVGDANVFY 94

Query: 83 WFQN 86
          WFQN
Sbjct: 95 WFQN 98


>Medtr4g088070.1 | wuschel homeobox protein | LC |
          chr4:34685878-34688712 | 20130731
          Length = 413

 Score = 87.4 bits (215), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 37/54 (68%), Positives = 45/54 (83%)

Query: 33 RSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGTVGDANVFYWFQN 86
          R RW PKPEQI ILE+I+NSGM NPP DE  +IR+ L++FG +GDA+VFYWFQN
Sbjct: 27 RPRWIPKPEQIRILEAIYNSGMKNPPVDEIKKIREQLQEFGQIGDASVFYWFQN 80


>Medtr4g088080.1 | wuschel homeobox protein | LC |
          chr4:34693672-34695281 | 20130731
          Length = 319

 Score = 85.5 bits (210), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 43/81 (53%), Positives = 56/81 (69%), Gaps = 4/81 (4%)

Query: 7  QKDPNTKNNNAPSPHHGCSSEKSEP-VRSRWTPKPEQILILESIFNSGMVNPPKDETVRI 65
          +K  N+ N+N     +G   E+  P  R RW PKPEQI ILE+I+NSG  NP +DE  +I
Sbjct: 14 KKSTNSSNSNH---QNGGDDEEITPGPRPRWIPKPEQIHILEAIYNSGTTNPRRDEIKKI 70

Query: 66 RKLLEKFGTVGDANVFYWFQN 86
          R+ LE+FG VGD++VFYWFQN
Sbjct: 71 REQLEEFGQVGDSSVFYWFQN 91


>Medtr4g084550.1 | wuschel-related homeobox protein | HC |
           chr4:32905916-32907479 | 20130731
          Length = 184

 Score = 61.6 bits (148), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 34/53 (64%)

Query: 34  SRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGTVGDANVFYWFQN 86
           SRW+P P Q+L+LE ++  GM  P  ++  +I   L +FG +   NVFYWFQN
Sbjct: 63  SRWSPTPVQLLVLEELYRQGMKTPSAEQIQQIASQLRQFGKIEGKNVFYWFQN 115


>Medtr8g107210.1 | stenofolia-like protein | HC |
           chr8:45305362-45303362 | 20130731
          Length = 358

 Score = 61.6 bits (148), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 43/84 (51%), Gaps = 10/84 (11%)

Query: 3   DHQGQKDPNTKNNNAPSPHHGCSSEKSEPVRSRWTPKPEQILILESIFNSGMVNPPKDET 62
           DH  + + N  NNN PS         +  V SRW P PEQ+  LE ++  G   P  ++ 
Sbjct: 74  DHSKRSELN--NNNNPSA--------AVVVSSRWNPTPEQLRALEELYRRGTRTPSAEQI 123

Query: 63  VRIRKLLEKFGTVGDANVFYWFQN 86
            +I   L KFG +   NVFYWFQN
Sbjct: 124 QQITAQLRKFGKIEGKNVFYWFQN 147


>Medtr5g021930.1 | wuschel-related homeobox protein | HC |
          chr5:8555099-8553751 | 20130731
          Length = 302

 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 1/59 (1%)

Query: 29 SEPVRSRWTPKPEQILILESIF-NSGMVNPPKDETVRIRKLLEKFGTVGDANVFYWFQN 86
          S    +RWTP  +QI IL+ ++ N+G+ +P  ++  RI   L ++G +   NVFYWFQN
Sbjct: 24 SRQSSTRWTPTTDQIRILKDLYYNNGIRSPSAEQIQRISARLRQYGKIEGKNVFYWFQN 82


>Medtr1g115315.1 | wuschel-related homeobox protein | HC |
           chr1:52025791-52029215 | 20130731
          Length = 264

 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 32/54 (59%)

Query: 33  RSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGTVGDANVFYWFQN 86
           R RWTP P Q+ ILE IF+ G   P K++   I   L + G + + NV+ WFQN
Sbjct: 83  RQRWTPTPVQLQILERIFDQGNGTPSKEKIKEIATELSQHGQISETNVYNWFQN 136


>Medtr7g060630.1 | wuschel-related homeobox protein | HC |
          chr7:21930278-21929162 | 20130731
          Length = 206

 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 35/58 (60%)

Query: 29 SEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGTVGDANVFYWFQN 86
          S P  SRW+P  EQ++ILE ++ SG+  P   +  +I   L  +G +   NVFYWFQN
Sbjct: 2  SPPGSSRWSPTTEQLMILEELYRSGIRTPSAVQIQQITTHLSFYGRIEGKNVFYWFQN 59


>Medtr1g115315.2 | wuschel-related homeobox protein | HC |
           chr1:52025869-52029102 | 20130731
          Length = 262

 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 32/54 (59%)

Query: 33  RSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGTVGDANVFYWFQN 86
           R RWTP P Q+ ILE IF+ G   P K++   I   L + G + + NV+ WFQN
Sbjct: 83  RQRWTPTPVQLQILERIFDQGNGTPSKEKIKEIATELSQHGQISETNVYNWFQN 136


>Medtr5g081990.1 | wuschel-related homeobox protein | HC |
          chr5:35185060-35183966 | 20130731
          Length = 184

 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 1/69 (1%)

Query: 19 SPHHGCSSEKSEPVRS-RWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGTVGD 77
          S  HG S   S   +  RW P  EQ+ +L  +F +G+  P  D+  +I   L  +G +  
Sbjct: 16 SNFHGKSGSSSTGTKCGRWNPTTEQVKLLTELFRAGLRTPSTDQIQKISNQLSFYGKIES 75

Query: 78 ANVFYWFQN 86
           NVFYWFQN
Sbjct: 76 KNVFYWFQN 84


>Medtr4g063735.1 | wuschel-related homeobox protein | HC |
          chr4:23615955-23617663 | 20130731
          Length = 257

 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 30/52 (57%)

Query: 35 RWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGTVGDANVFYWFQN 86
          RW P  EQI +LE+++  G+  P  +E   I   L  +G +   NVFYWFQN
Sbjct: 25 RWNPTKEQISMLENLYKQGIKTPSAEEIQEITARLRVYGHIEGKNVFYWFQN 76


>Medtr1g019130.2 | wuschel-related homeobox protein | HC |
           chr1:5704096-5705687 | 20130731
          Length = 228

 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 31/53 (58%)

Query: 34  SRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGTVGDANVFYWFQN 86
           +RW P  EQI ILE ++  GM  P   +  +I   L K+G +   NVFYWFQN
Sbjct: 89  TRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITVQLSKYGKIEGKNVFYWFQN 141


>Medtr3g115620.1 | wuschel-related homeobox protein | HC |
           chr3:54113734-54116409 | 20130731
          Length = 215

 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 34/64 (53%), Gaps = 1/64 (1%)

Query: 23  GCSSEKSEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGTVGDANVFY 82
            CS  K    R RWTP P Q+ ILE IF+ G   P K +   I   L + G + + NV+ 
Sbjct: 71  ACSGHKITS-RQRWTPMPIQLQILERIFDEGNGTPTKQKIKDITIELGQHGQISETNVYN 129

Query: 83  WFQN 86
           WFQN
Sbjct: 130 WFQN 133


>Medtr1g019130.1 | wuschel-related homeobox protein | HC |
           chr1:5704096-5705687 | 20130731
          Length = 236

 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 31/53 (58%)

Query: 34  SRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGTVGDANVFYWFQN 86
           +RW P  EQI ILE ++  GM  P   +  +I   L K+G +   NVFYWFQN
Sbjct: 89  TRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITVQLSKYGKIEGKNVFYWFQN 141


>Medtr7g023810.1 | homeodomain protein HB2 | HC |
           chr7:7798636-7797897 | 20130731
          Length = 183

 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 32/58 (55%)

Query: 29  SEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGTVGDANVFYWFQN 86
           S  +R RWTP P Q+  LE IF +    P K++   I   L K G + + +V+ WFQN
Sbjct: 62  STRLRQRWTPTPVQLQSLERIFEAETGTPSKEKIKEITADLTKHGQISETSVYNWFQN 119