Miyakogusa Predicted Gene

Lj1g3v3981500.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3981500.1 Non Characterized Hit- tr|I1KCU0|I1KCU0_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,33.33,0.002,
,CUFF.31739.1
         (96 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g027470.1 | transmembrane protein, putative | HC | chr6:94...    73   7e-14
Medtr6g027480.1 | transmembrane protein, putative | HC | chr6:94...    49   9e-07

>Medtr6g027470.1 | transmembrane protein, putative | HC |
          chr6:9444643-9442695 | 20130731
          Length = 89

 Score = 72.8 bits (177), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 40/92 (43%), Positives = 57/92 (61%), Gaps = 5/92 (5%)

Query: 4  KPFLKLLVILLGLSCFGYAVAVPATRSSMIWKVDPSILQDHLAKDDHVMGLRNNQGVLEI 63
          K  +K++ I+L LS + Y  AVP+TRS M   +D     D  AK+D +M L NN  + ++
Sbjct: 2  KATIKIVFIILVLS-YVYVAAVPSTRSRMTKTMDI----DLEAKEDLIMSLMNNDQLFDL 56

Query: 64 KEEAVESRMLVDVADYPGTRPNPSHNPKPPAK 95
          K E  + RM+ D++DYPGT PN  H+PK P K
Sbjct: 57 KVEFEKRRMMTDLSDYPGTGPNHHHDPKSPGK 88


>Medtr6g027480.1 | transmembrane protein, putative | HC |
          chr6:9461945-9463358 | 20130731
          Length = 88

 Score = 49.3 bits (116), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 7/92 (7%)

Query: 3  KKPFLKLLVILLGLSCFGYAVAVPATRSSMIWKVDPSILQDHLAKDDHVMGLRNNQGVLE 62
          +K F  L VILL  S F    A+PATR+  +   D S+    L KD         + ++ 
Sbjct: 2  EKNFFILFVILLSFSYFLQVFAIPATRTKNLNSEDESVFAS-LYKD------HGEKMMVH 54

Query: 63 IKEEAVESRMLVDVADYPGTRPNPSHNPKPPA 94
          + E  +  R+ +++ DY G   N  HNPK P 
Sbjct: 55 MDERLIGRRVNLELHDYEGPGANKEHNPKSPG 86