Miyakogusa Predicted Gene

Lj1g3v3975590.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3975590.1 Non Characterized Hit- tr|I3SA27|I3SA27_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,96.69,0,RRM,RNA
recognition motif domain; no description,Nucleotide-binding,
alpha-beta plait; RNA-binding d,CUFF.31685.1
         (272 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g086080.1 | RNA-binding (RRM/RBD/RNP motif) family protein...   439   e-123
Medtr8g066460.2 | RNA recognition motif, a.k.a. RRM, RBD protein...   208   3e-54
Medtr8g066460.1 | RNA recognition motif, a.k.a. RRM, RBD protein...   208   5e-54
Medtr8g105910.1 | RNA recognition motif, a.k.a. RRM, RBD protein...   197   1e-50
Medtr1g032860.1 | RNA recognition motif, a.k.a. RRM, RBD protein...   190   1e-48
Medtr5g029640.1 | RNA recognition motif, a.k.a. RRM, RBD protein...   190   2e-48
Medtr5g039130.1 | RNA recognition motif, a.k.a. RRM, RBD protein...   146   2e-35
Medtr7g010100.1 | RNA recognition motif, a.k.a. RRM, RBD protein...   120   2e-27
Medtr5g038107.1 | RNA recognition motif, a.k.a. RRM, RBD protein...    56   4e-08

>Medtr7g086080.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
           HC | chr7:33392159-33388471 | 20130731
          Length = 265

 Score =  439 bits (1129), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 216/269 (80%), Positives = 240/269 (89%), Gaps = 6/269 (2%)

Query: 1   MQTRTVQVKQVSDLVGEREIHEFFSFSGEIEHVEILSEYGKSKTAFVTFKDAKALEIALL 60
           MQTRTVQVKQ+SDL  EREIHEFFSFSGEIEH++I+ EYGK KTAFVTFKD +ALEIALL
Sbjct: 1   MQTRTVQVKQLSDLATEREIHEFFSFSGEIEHIQIVREYGKPKTAFVTFKDPRALEIALL 60

Query: 61  LSGATIVDQIVSITPVENYVPNREMLEVTVVENAINVAPEHVSLNIEEEKPSSPSSVNGR 120
           LSGATIVDQIVSI+PVENYV NRE  EV VVE AIN+APE  + N EEEKP       GR
Sbjct: 61  LSGATIVDQIVSISPVENYVANRETQEVGVVEYAINIAPEDAASNTEEEKPG------GR 114

Query: 121 VYLSRAQVAVSSMLAKGSAIKQDAVNKAKAFDEKHQLTSNASAKVISFDKRVGLTEKLTV 180
           +YLS+AQ  V++MLAKGSAI+QDAVNKAKAFDEKHQLT+NASAKV +FDKRVGLTEKLTV
Sbjct: 115 IYLSKAQDVVTTMLAKGSAIRQDAVNKAKAFDEKHQLTANASAKVSNFDKRVGLTEKLTV 174

Query: 181 GLSAMNEKVKSVDQRLHVSDKTMAAIFAAERKLNDTGSAVKTSRYVTAGTSWLNGAFSKV 240
           GLS +NEKVKSVDQRLHVSDKTMAAIFAAERKLNDTGSAVKTSRYVTAGT+WL GAFSKV
Sbjct: 175 GLSVVNEKVKSVDQRLHVSDKTMAAIFAAERKLNDTGSAVKTSRYVTAGTTWLTGAFSKV 234

Query: 241 AKVGHVASTRTREKFNMAVSNLTAKDSPV 269
           A+ G+VA T+TREKFNMAVSNLT+K++ +
Sbjct: 235 ARAGNVAGTKTREKFNMAVSNLTSKETSL 263


>Medtr8g066460.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr8:27635035-27639318 | 20130731
          Length = 295

 Score =  208 bits (530), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 117/254 (46%), Positives = 165/254 (64%), Gaps = 20/254 (7%)

Query: 1   MQTRTVQVKQVSDLVGEREIHEFFSFSGEIEHVEILSEYGKSKTAFVTFKDAKALEIALL 60
           +Q +T++V  VS    E+++ EFFSFSG+IE+VE+ S   +S+ AFVTFKD +  E A+L
Sbjct: 17  LQVKTIKVDNVSLGASEQDLKEFFSFSGDIEYVEMQSYDERSQIAFVTFKDPQGAETAVL 76

Query: 61  LSGATIVDQIVSITPVENYVPNREMLEVTVVENAINVAPEHVSLNIEEEKPSSPSSVNGR 120
           LSGATIVD  V IT   +Y                 + P  ++ +  E K  +P   +  
Sbjct: 77  LSGATIVDLSVKITLDPDY----------------KLPPAALASSASEGK--TPGGADSA 118

Query: 121 VYLSRAQVAVSSMLAKGSAIKQDAVNKAKAFDEKHQLTSNASAKVISFDKRVGLTEKLTV 180
             L +A+  V+SMLAKG  + +DAVNKAK FDEKHQL+S ASAKV SFD+++GL+EKLT 
Sbjct: 119 --LRKAEDVVTSMLAKGFILGKDAVNKAKGFDEKHQLSSTASAKVTSFDQKLGLSEKLTA 176

Query: 181 GLSAMNEKVKSVDQRLHVSDKTMAAIFAAERKLNDTGSAVKTSRYVTAGTSWLNGAFSKV 240
           G S ++ +VK VDQ+  VS+KT +A  AAE+K++  GSA+  +RY+  GT+W+ GAF+KV
Sbjct: 177 GASVVSGRVKEVDQKFQVSEKTKSAFAAAEQKVSTAGSAIMKNRYILTGTTWVTGAFNKV 236

Query: 241 AKVGHVASTRTREK 254
           AK       +T+EK
Sbjct: 237 AKAAGDVGQKTKEK 250


>Medtr8g066460.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr8:27633972-27639318 | 20130731
          Length = 279

 Score =  208 bits (529), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 117/254 (46%), Positives = 164/254 (64%), Gaps = 20/254 (7%)

Query: 1   MQTRTVQVKQVSDLVGEREIHEFFSFSGEIEHVEILSEYGKSKTAFVTFKDAKALEIALL 60
           M  +T++V  VS    E+++ EFFSFSG+IE+VE+ S   +S+ AFVTFKD +  E A+L
Sbjct: 1   MSVKTIKVDNVSLGASEQDLKEFFSFSGDIEYVEMQSYDERSQIAFVTFKDPQGAETAVL 60

Query: 61  LSGATIVDQIVSITPVENYVPNREMLEVTVVENAINVAPEHVSLNIEEEKPSSPSSVNGR 120
           LSGATIVD  V IT   +Y                 + P  ++ +  E K  +P   +  
Sbjct: 61  LSGATIVDLSVKITLDPDY----------------KLPPAALASSASEGK--TPGGADSA 102

Query: 121 VYLSRAQVAVSSMLAKGSAIKQDAVNKAKAFDEKHQLTSNASAKVISFDKRVGLTEKLTV 180
             L +A+  V+SMLAKG  + +DAVNKAK FDEKHQL+S ASAKV SFD+++GL+EKLT 
Sbjct: 103 --LRKAEDVVTSMLAKGFILGKDAVNKAKGFDEKHQLSSTASAKVTSFDQKLGLSEKLTA 160

Query: 181 GLSAMNEKVKSVDQRLHVSDKTMAAIFAAERKLNDTGSAVKTSRYVTAGTSWLNGAFSKV 240
           G S ++ +VK VDQ+  VS+KT +A  AAE+K++  GSA+  +RY+  GT+W+ GAF+KV
Sbjct: 161 GASVVSGRVKEVDQKFQVSEKTKSAFAAAEQKVSTAGSAIMKNRYILTGTTWVTGAFNKV 220

Query: 241 AKVGHVASTRTREK 254
           AK       +T+EK
Sbjct: 221 AKAAGDVGQKTKEK 234


>Medtr8g105910.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr8:44708434-44705936 | 20130731
          Length = 311

 Score =  197 bits (500), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 105/255 (41%), Positives = 161/255 (63%), Gaps = 24/255 (9%)

Query: 4   RTVQVKQVSDLVGEREIHEFFSFSGEIEHVEILSEYGKSKTAFVTFKDAKALEIALLLSG 63
           +TV+V  VS    E++I EFFSFSG+I++VE+  E   +KTA+VTFK+++  + A+LL+G
Sbjct: 32  KTVKVSNVSMTATEKDIKEFFSFSGDIQYVEMQKETESTKTAYVTFKNSQGADTAVLLTG 91

Query: 64  ATIVDQIVSITPVENYVPNREMLEVTVVENAINVAPEHVSLNIEEEKPSSPSSVNGRVYL 123
           + I +  V+ITP ENY                 + PE         +P SP+       +
Sbjct: 92  SNIANSPVTITPFENY----------------QLPPE--------AQPFSPNQKQTPAAV 127

Query: 124 SRAQVAVSSMLAKGSAIKQDAVNKAKAFDEKHQLTSNASAKVISFDKRVGLTEKLTVGLS 183
            +A+ AVS+MLAKG  + + A+N+AK+FDE+H L SNASA V S D+++GLT+KL++G +
Sbjct: 128 KKAEDAVSTMLAKGFVLGKGAINRAKSFDERHHLISNASATVASIDRKIGLTDKLSIGTA 187

Query: 184 AMNEKVKSVDQRLHVSDKTMAAIFAAERKLNDTGSAVKTSRYVTAGTSWLNGAFSKVAKV 243
            +NEKV+ +D++  VS+KT +    AE+K +D GSA+ ++ YV+ G SW++ A + VAK 
Sbjct: 188 IVNEKVREMDEKFQVSEKTKSVYAVAEQKASDAGSAIMSNPYVSTGASWVSSAITVVAKA 247

Query: 244 GHVASTRTREKFNMA 258
               +T T EK  MA
Sbjct: 248 AEDVTTMTMEKVEMA 262


>Medtr1g032860.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr1:11766966-11762832 | 20130731
          Length = 311

 Score =  190 bits (483), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 103/255 (40%), Positives = 160/255 (62%), Gaps = 25/255 (9%)

Query: 4   RTVQVKQVSDLVGEREIHEFFSFSGEIEHVEILSEYGKSKTAFVTFKDAKALEIALLLSG 63
           RTV+V  +S +  +++I EFFSFSG+I+++E+  E  +++ A+VTFKD++  E A+LL+G
Sbjct: 32  RTVKVSNISLITSKQDIEEFFSFSGDIQYIEMQRESDRTQVAYVTFKDSQGAETAVLLTG 91

Query: 64  ATIVDQIVSITPVENYVPNREMLEVTVVENAINVAPEHVSLNIEEEKPSSPSSVNGRVYL 123
           + I D  V+I+PVE Y                 + PE +        PSSP++ +    +
Sbjct: 92  SKIGDLYVTISPVEQY----------------QLPPEAL--------PSSPTNQSADA-V 126

Query: 124 SRAQVAVSSMLAKGSAIKQDAVNKAKAFDEKHQLTSNASAKVISFDKRVGLTEKLTVGLS 183
            + +  +S+MLAKG  + +DA+NK K+ DE+ QLTSNAS+ V S D ++GL++KL++G +
Sbjct: 127 KKTEDVISTMLAKGFILGKDAINKTKSIDERLQLTSNASSAVASIDNKIGLSDKLSIGTT 186

Query: 184 AMNEKVKSVDQRLHVSDKTMAAIFAAERKLNDTGSAVKTSRYVTAGTSWLNGAFSKVAKV 243
            +NEKVK +D+R  +S+ T +AI  AE+K +  GSA+ ++ YV  G  WL+ AFS VAK 
Sbjct: 187 IVNEKVKEMDERYQLSEMTKSAIAVAEQKASSAGSAIMSNSYVLTGALWLSSAFSVVAKA 246

Query: 244 GHVASTRTREKFNMA 258
               ST T EK   A
Sbjct: 247 AEDVSTMTMEKVEQA 261


>Medtr5g029640.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
           LC | chr5:12456373-12449233 | 20130731
          Length = 465

 Score =  190 bits (482), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 112/258 (43%), Positives = 161/258 (62%), Gaps = 20/258 (7%)

Query: 1   MQTRTVQVKQVSDLVGEREIHEFFSFSGEIEHVEILSEYGKSKTAFVTFKDAKALEIALL 60
           M  +TV+V  VS    ER+I EFFSFSG+I +VE+ S   +S+TA+VTFKD++  E A+L
Sbjct: 1   MSIKTVKVGNVSLGATERDIQEFFSFSGDIAYVELRSHDERSQTAYVTFKDSQGAETAVL 60

Query: 61  LSGATIVDQIVSITPVENYVPNREMLEVTVVENAINVAPEHVSLNIEEEKPSSPSSVNGR 120
           LSGATIVD  V+IT   +Y                 + PE +   + E K  +P   +  
Sbjct: 61  LSGATIVDLSVNITLDPDY----------------QLPPEALVSPVSESK--TPGGADSA 102

Query: 121 VYLSRAQVAVSSMLAKGSAIKQDAVNKAKAFDEKHQLTSNASAKVISFDKRVGLTEKLTV 180
             L +A+  V+SM AKG  + +DAVNKAK FDEK QL+S ASA V S D+++GL++K+  
Sbjct: 103 --LRKAEDVVTSMAAKGFILGKDAVNKAKTFDEKLQLSSKASATVASVDQKLGLSDKIGA 160

Query: 181 GLSAMNEKVKSVDQRLHVSDKTMAAIFAAERKLNDTGSAVKTSRYVTAGTSWLNGAFSKV 240
           G S +++KV+ VDQ+  VS+KT +A  AAE+ ++  GSA+  +RYV  G SW+ GAF++V
Sbjct: 161 GASVVSDKVREVDQKFLVSEKTKSAFAAAEQTVSTAGSAIMKNRYVLTGASWVTGAFNRV 220

Query: 241 AKVGHVASTRTREKFNMA 258
           +K       +T+EK   A
Sbjct: 221 SKAAVEVGQKTKEKVENA 238



 Score =  123 bits (308), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 64/129 (49%), Positives = 89/129 (68%)

Query: 130 VSSMLAKGSAIKQDAVNKAKAFDEKHQLTSNASAKVISFDKRVGLTEKLTVGLSAMNEKV 189
           VSSM AKG  + +DAVNKAK FDEK QL+S AS  V S D+++GL+EK+  G S + +KV
Sbjct: 282 VSSMAAKGFTLGKDAVNKAKTFDEKLQLSSKASVTVASIDQKLGLSEKIGAGASVVGDKV 341

Query: 190 KSVDQRLHVSDKTMAAIFAAERKLNDTGSAVKTSRYVTAGTSWLNGAFSKVAKVGHVAST 249
           + VDQ+  VS+KT +A  AAE+ ++  GSA+  +RYV  G SW+ GAF++V+K     S 
Sbjct: 342 REVDQKFLVSEKTKSAFAAAEQTVSTAGSAIMKNRYVLTGASWVTGAFNRVSKAAVEVSQ 401

Query: 250 RTREKFNMA 258
           +T+EK   A
Sbjct: 402 KTKEKVENA 410


>Medtr5g039130.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr5:17217313-17213389 | 20130731
          Length = 249

 Score =  146 bits (369), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 92/244 (37%), Positives = 142/244 (58%), Gaps = 23/244 (9%)

Query: 6   VQVKQVSDLVGEREIHEFFSFSGEIEHVEILSEYGKSKTAFVTFKDAKALEIALLLSGAT 65
           V+V  +S    +++++EFF+FSG I+HVEI+     + TA+VTFKDA + + A LLSGAT
Sbjct: 10  VEVTGLSPQATDKDVYEFFAFSGAIQHVEIIRSGDYACTAYVTFKDAYSQDTACLLSGAT 69

Query: 66  IVDQIVSITPVENY-------VPNREMLEVTVVENAINVAPEHVSLNIEEEKPSSPSSVN 118
           I+DQ V IT    Y        P+    E    EN+     +H + +  +   S+  +V 
Sbjct: 70  ILDQRVCITRWGQYEEHDFWSRPSYSHEE----ENSYTT--QHQTQHSSQFVSSAGEAV- 122

Query: 119 GRVYLSRAQVAVSSMLAKGSAIKQDAVNKAKAFDEKHQLTSNASAKVISFDKRVGLTEKL 178
                +  Q  V +MLAKG  + +DA++KAK FDE H++++ A+AKV    +++GLT+KL
Sbjct: 123 -----AMTQEVVKTMLAKGYVLSKDALSKAKDFDESHRVSATATAKVSELSQKIGLTDKL 177

Query: 179 TVGLSAMNEKVKSVDQRLHVSDKTMAAIFAAERKLNDTGSAVKTSRYVTAGTSWLNGAFS 238
           + G  A    VKSVDQ+ +VS  TMAA  A  R +    ++V  S Y + G  W++GA +
Sbjct: 178 SAGYDA----VKSVDQKYNVSGTTMAAASATGRTVAAAANSVVNSSYFSKGALWMSGALT 233

Query: 239 KVAK 242
           + A+
Sbjct: 234 RAAQ 237


>Medtr7g010100.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr7:2383435-2379049 | 20130731
          Length = 255

 Score =  120 bits (300), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 88/262 (33%), Positives = 132/262 (50%), Gaps = 38/262 (14%)

Query: 5   TVQVKQVSDLVGEREIHEFFSFSGEIEHVEILSEYGKSKTAFVTFKDAKALEIALLLSGA 64
           T ++  ++    E ++  FF + G IE V+++       TA+VTF+DA ALE ALLL+G+
Sbjct: 7   TAEITNLTPRATENDVQNFFGYCGVIERVDVIRSSDYESTAYVTFRDAYALETALLLNGS 66

Query: 65  TIVDQIVSITPVENYVPNREMLEVTVVENAINVAPEH-----VSLNIEEEK-PSSPSSVN 118
            I+D+ +SI+  E Y  +          N  N+ P H      S ++  +K  SSP    
Sbjct: 67  MILDRCISISRWETYTDDS--------NNWNNLTPNHEDSITYSQDMHMDKFVSSPGEA- 117

Query: 119 GRVYLSRAQVAVSSMLAKGSAIKQDAVNKAKAFDEKHQLTSNASAKVISFDKRVGLTEKL 178
               L+ AQ  V +M+AKG  + +DA   AKAFDE   ++S A+ KV     ++GLTE +
Sbjct: 118 ----LTMAQQVVKTMVAKGFVLSKDAFVMAKAFDESRSVSSTAANKVAELSNKIGLTETI 173

Query: 179 TVGLSAMNEKVKSVDQRLHVSDKTMA--------AIFAAE---RKLNDTGSAVKTSRYVT 227
             G+    E  KSVD++ HV+D T +        AI  A    R     GSA+  S Y  
Sbjct: 174 NSGI----ETFKSVDEKYHVTDITKSAATVTGTTAIVVATVTGRAAMAAGSAIANSSYFA 229

Query: 228 AGTSWLNGAFSKVAK----VGH 245
            G  W++   S+ AK    +GH
Sbjct: 230 KGALWVSDMLSRAAKSTADLGH 251


>Medtr5g038107.1 | RNA recognition motif, a.k.a. RRM, RBD protein
          | LC | chr5:16661140-16658533 | 20130731
          Length = 129

 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/62 (48%), Positives = 41/62 (66%)

Query: 1  MQTRTVQVKQVSDLVGEREIHEFFSFSGEIEHVEILSEYGKSKTAFVTFKDAKALEIALL 60
          M  +TV+V  VS    +R+I EFF+F G+I +VE+ S    S+TA+VTFKD    E A+L
Sbjct: 1  MSIKTVKVINVSLGAAKRDILEFFTFCGDIAYVELRSHDEGSQTAYVTFKDTHGAETAVL 60

Query: 61 LS 62
          LS
Sbjct: 61 LS 62