Miyakogusa Predicted Gene

Lj1g3v3974780.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3974780.2 tr|B9GYG3|B9GYG3_POPTR Predicted protein
(Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_646885
PE=4,84,2e-18,seg,NULL; no description,NULL,CUFF.31625.2
         (203 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g113530.1 | chaperone protein DnaJ | HC | chr7:46786981-46...   157   7e-39
Medtr7g113530.2 | chaperone protein DnaJ | HC | chr7:46786981-46...   157   7e-39
Medtr2g035660.1 | plastid transcriptionally active 14 protein | ...   142   3e-34

>Medtr7g113530.1 | chaperone protein DnaJ | HC |
           chr7:46786981-46784228 | 20130731
          Length = 251

 Score =  157 bits (396), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 79/116 (68%), Positives = 94/116 (81%), Gaps = 4/116 (3%)

Query: 1   MIRRVIEAYRMLSNFSPSQIIERECLDPFDTPECEAFDLFVNELFCVGKACSNSCVERAP 60
           MIRRVI+AY++LSN++PSQIIE ECLDPF  PECEAFDLFVNE  CVGKACSNSCVERAP
Sbjct: 92  MIRRVIQAYQILSNYTPSQIIETECLDPFGRPECEAFDLFVNEFLCVGKACSNSCVERAP 151

Query: 61  HSFTYVSSTGTARASSQGRITKFNRLLDSVLEIAFLC---YPPSQRILLEELLDSV 113
           H+FT+VSSTGTARASSQG    + ++  +V +    C     PSQRI+LEELL+S+
Sbjct: 152 HAFTFVSSTGTARASSQGHGEDY-QVQCAVGQCPRSCIHYVTPSQRIILEELLNSI 206


>Medtr7g113530.2 | chaperone protein DnaJ | HC |
           chr7:46786981-46784180 | 20130731
          Length = 251

 Score =  157 bits (396), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 79/116 (68%), Positives = 94/116 (81%), Gaps = 4/116 (3%)

Query: 1   MIRRVIEAYRMLSNFSPSQIIERECLDPFDTPECEAFDLFVNELFCVGKACSNSCVERAP 60
           MIRRVI+AY++LSN++PSQIIE ECLDPF  PECEAFDLFVNE  CVGKACSNSCVERAP
Sbjct: 92  MIRRVIQAYQILSNYTPSQIIETECLDPFGRPECEAFDLFVNEFLCVGKACSNSCVERAP 151

Query: 61  HSFTYVSSTGTARASSQGRITKFNRLLDSVLEIAFLC---YPPSQRILLEELLDSV 113
           H+FT+VSSTGTARASSQG    + ++  +V +    C     PSQRI+LEELL+S+
Sbjct: 152 HAFTFVSSTGTARASSQGHGEDY-QVQCAVGQCPRSCIHYVTPSQRIILEELLNSI 206


>Medtr2g035660.1 | plastid transcriptionally active 14 protein | HC
           | chr2:15050768-15056551 | 20130731
          Length = 480

 Score =  142 bits (357), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 63/75 (84%), Positives = 69/75 (92%)

Query: 127 DPNLASTMRSQQQRALEFWEKNWHSGAPLKIKRLARDPQRFIWAVGIAQSRCINMQMRVG 186
           DP+LASTMR QQQR LEFWEKNWHSG PLK+KRLARDPQRF+WAVGIAQSRCINMQMR+ 
Sbjct: 206 DPDLASTMRVQQQRVLEFWEKNWHSGVPLKVKRLARDPQRFMWAVGIAQSRCINMQMRMC 265

Query: 187 ALTQNANMLVPYAGL 201
           ALTQ ANML+PYA +
Sbjct: 266 ALTQQANMLIPYADM 280