Miyakogusa Predicted Gene

Lj1g3v3964490.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3964490.1 Non Characterized Hit- tr|C1E834|C1E834_MICSR
Putative uncharacterized protein OS=Micromonas sp.
(st,41.9,5e-18,seg,NULL; Sas10_Utp3_C,Sas10 C-terminal domain;
Sas10_Utp3,Sas10/Utp3/C1D; SUBFAMILY NOT NAMED,NULL;,CUFF.31604.1
         (661 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g087270.1 | Sas10/U3 ribonucleoprotein (UTP) family protei...   592   e-169
Medtr4g087270.2 | Sas10/U3 ribonucleoprotein (UTP) family protei...   586   e-167
Medtr3g099850.1 | Sas10/Utp3/C1D family protein | HC | chr3:4581...    77   4e-14

>Medtr4g087270.1 | Sas10/U3 ribonucleoprotein (UTP) family protein,
           putative | HC | chr4:34218303-34225908 | 20130731
          Length = 653

 Score =  592 bits (1527), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 355/648 (54%), Positives = 414/648 (63%), Gaps = 46/648 (7%)

Query: 33  MDDEIDAFHKHRDIVPLDVNDDFGESDEDDELPIFX----XXXXXXXXXXXXXXXXXXXX 88
           MDDEID FHK RDIVPLD+N D  ESDEDDE+PIF                         
Sbjct: 33  MDDEIDIFHKQRDIVPLDINADSAESDEDDEMPIFNDKDIDNDETDEDGDEEEDDDDEDD 92

Query: 89  XXXXXXXXXVAKIIRQRNFLRAKFXXXXXXXXXXXXXXXXXXKHILGGRRSAHGADIHNI 148
                    + ++IRQ+ +L++                    K  + GR+  HGAD  N 
Sbjct: 93  EYDGKEKGFIGQLIRQQKYLKS--LHGGDEDGMQDEEDDEGIKKTIVGRKHRHGADNRNF 150

Query: 149 ELLSSDDEAPKEEEEIAMQIQREKARSLTMEDYDLDISEDKVKDKSTLKDASDKGNREMK 208
           EL SSDDEA KEEEEIA + QREKA+ LT ED+DL   ED+  +K T KDASD       
Sbjct: 151 ELQSSDDEALKEEEEIAREEQREKAKLLTEEDFDL--VEDEDNEKLTFKDASD------- 201

Query: 209 SPDRDITFKAEDLNALSKEEQMNLVYRCAPELIDWLSELNEAHKQLECKINPFLSKVQKG 268
               ++T   EDL+ALSKEEQMN++YR APEL+DWLSELNEAHKQLE KINPFLSKV+KG
Sbjct: 202 ----NVTSNVEDLSALSKEEQMNVLYRSAPELVDWLSELNEAHKQLEFKINPFLSKVKKG 257

Query: 269 EIVMEGGVRYFELKQLLLLSYCQAITFYLLLKSEGHPVHDHPVVARLAEIRELLDQIKQL 328
           EIVMEGGVRYFELKQL+LLSYCQAITFYLLLKSEG  V  HPV+ RL EI+EL++Q KQL
Sbjct: 258 EIVMEGGVRYFELKQLILLSYCQAITFYLLLKSEGQSVDHHPVIGRLEEIKELMNQTKQL 317

Query: 329 DAKLPVGLEDILKESNGLETVVNSDNENAPITIDSITRNQELPLVSAESLEEAMPIKVDE 388
           D++LPV LEDILK S+   TVV SDNENAP+  DSI  ++E PLVSAES EEA+ +    
Sbjct: 318 DSELPVELEDILKASSVFATVVKSDNENAPMPTDSIAISEEQPLVSAESPEEAVVV---- 373

Query: 389 IKKLDSSKDGVPKARKVKHQKDHIGMRSLEMLTVRASLAEKWXXXXXXXXXXXXXXXGLK 448
                 +KDG  K RKVK QKDHIG++S EML VRASL EK                  K
Sbjct: 374 -----ITKDGAKKGRKVKDQKDHIGVQSSEMLKVRASLEEKLKQKGLYSQIAPKPSNSQK 428

Query: 449 RSRPDNSQHGTSVFDDDAV---GPARLSQGLRKS--------NLKKPKVISGDDDLPEKD 497
           RSRP N Q  T    DDAV   GPA LS GL  S        NLKK KV SGDDDLP++D
Sbjct: 429 RSRPANGQLATYDDFDDAVVVNGPAGLSNGLVSSKVSPFVNANLKKLKVASGDDDLPKRD 488

Query: 498 DIGERRRKHELRVLASAXXXXXXXXXXXXXXXXXXXXXAKQAHVEA-EDSDNEFYEQVKQ 556
            IGERR +HE RV+A A                       +  +E+  DS+NEFY+QV++
Sbjct: 489 AIGERRERHEKRVMAGAGVTIEDDNDDDDQMDDLVSHEVGEEDIESGGDSENEFYKQVEK 548

Query: 557 XXXXXXXXXXETY---SRKSAASSLSETFSETIEGKRHITSQMEKNRGLTRIRNKDKKNP 613
                      TY   SRKSA  SL E   ET +GKR+ITSQM KNRGLTR RNKDKKNP
Sbjct: 549 LQAAKRAAKAVTYSTSSRKSAVPSLPE---ETADGKRYITSQMSKNRGLTRSRNKDKKNP 605

Query: 614 RKNYKMKHQKAVKNRKGQVQAIRKPTAPYGGEATGINASISRSVRFKS 661
           RKNYK+KHQKAVKNRKGQVQ+IR+P APY GE+TGINA+ISRS+RF+S
Sbjct: 606 RKNYKLKHQKAVKNRKGQVQSIRRPNAPYSGESTGINATISRSIRFRS 653


>Medtr4g087270.2 | Sas10/U3 ribonucleoprotein (UTP) family protein,
           putative | HC | chr4:34218303-34225897 | 20130731
          Length = 652

 Score =  586 bits (1510), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 354/648 (54%), Positives = 413/648 (63%), Gaps = 47/648 (7%)

Query: 33  MDDEIDAFHKHRDIVPLDVNDDFGESDEDDELPIFX----XXXXXXXXXXXXXXXXXXXX 88
           MDDEID FHK RDIVPLD+N D  ESDEDDE+PIF                         
Sbjct: 33  MDDEIDIFHKQRDIVPLDINADSAESDEDDEMPIFNDKDIDNDETDEDGDEEEDDDDEDD 92

Query: 89  XXXXXXXXXVAKIIRQRNFLRAKFXXXXXXXXXXXXXXXXXXKHILGGRRSAHGADIHNI 148
                    + ++IRQ+ +L++                    K  + GR+  HGAD  N 
Sbjct: 93  EYDGKEKGFIGQLIRQQKYLKS--LHGGDEDGMQDEEDDEGIKKTIVGRKHRHGADNRNF 150

Query: 149 ELLSSDDEAPKEEEEIAMQIQREKARSLTMEDYDLDISEDKVKDKSTLKDASDKGNREMK 208
           EL SSDDEA KEEEEIA + QREKA+ LT ED+DL   ED+  +K T KDASD       
Sbjct: 151 ELQSSDDEALKEEEEIAREEQREKAKLLTEEDFDL--VEDEDNEKLTFKDASD------- 201

Query: 209 SPDRDITFKAEDLNALSKEEQMNLVYRCAPELIDWLSELNEAHKQLECKINPFLSKVQKG 268
               ++T   EDL+ALSKEEQMN++YR APEL+DWLSELNEAHKQLE KINPFLSKV+KG
Sbjct: 202 ----NVTSNVEDLSALSKEEQMNVLYRSAPELVDWLSELNEAHKQLEFKINPFLSKVKKG 257

Query: 269 EIVMEGGVRYFELKQLLLLSYCQAITFYLLLKSEGHPVHDHPVVARLAEIRELLDQIKQL 328
           EIVMEGGVRYFELKQL+LLSYCQAITFYLLLKSEG  V  HPV+ RL EI+EL++Q KQL
Sbjct: 258 EIVMEGGVRYFELKQLILLSYCQAITFYLLLKSEGQSVDHHPVIGRLEEIKELMNQTKQL 317

Query: 329 DAKLPVGLEDILKESNGLETVVNSDNENAPITIDSITRNQELPLVSAESLEEAMPIKVDE 388
           D++LPV LEDILK S+   TVV SDNENAP+  DSI  ++E PLVSAES EEA+ +    
Sbjct: 318 DSELPVELEDILKASSVFATVVKSDNENAPMPTDSIAISEEQPLVSAESPEEAVVV---- 373

Query: 389 IKKLDSSKDGVPKARKVKHQKDHIGMRSLEMLTVRASLAEKWXXXXXXXXXXXXXXXGLK 448
                 +KDG  K RKVK Q DHIG++S EML VRASL EK                  K
Sbjct: 374 -----ITKDGAKKGRKVKDQ-DHIGVQSSEMLKVRASLEEKLKQKGLYSQIAPKPSNSQK 427

Query: 449 RSRPDNSQHGTSVFDDDAV---GPARLSQGLRKS--------NLKKPKVISGDDDLPEKD 497
           RSRP N Q  T    DDAV   GPA LS GL  S        NLKK KV SGDDDLP++D
Sbjct: 428 RSRPANGQLATYDDFDDAVVVNGPAGLSNGLVSSKVSPFVNANLKKLKVASGDDDLPKRD 487

Query: 498 DIGERRRKHELRVLASAXXXXXXXXXXXXXXXXXXXXXAKQAHVEA-EDSDNEFYEQVKQ 556
            IGERR +HE RV+A A                       +  +E+  DS+NEFY+QV++
Sbjct: 488 AIGERRERHEKRVMAGAGVTIEDDNDDDDQMDDLVSHEVGEEDIESGGDSENEFYKQVEK 547

Query: 557 XXXXXXXXXXETY---SRKSAASSLSETFSETIEGKRHITSQMEKNRGLTRIRNKDKKNP 613
                      TY   SRKSA  SL E   ET +GKR+ITSQM KNRGLTR RNKDKKNP
Sbjct: 548 LQAAKRAAKAVTYSTSSRKSAVPSLPE---ETADGKRYITSQMSKNRGLTRSRNKDKKNP 604

Query: 614 RKNYKMKHQKAVKNRKGQVQAIRKPTAPYGGEATGINASISRSVRFKS 661
           RKNYK+KHQKAVKNRKGQVQ+IR+P APY GE+TGINA+ISRS+RF+S
Sbjct: 605 RKNYKLKHQKAVKNRKGQVQSIRRPNAPYSGESTGINATISRSIRFRS 652


>Medtr3g099850.1 | Sas10/Utp3/C1D family protein | HC |
           chr3:45816305-45813153 | 20130731
          Length = 320

 Score = 77.4 bits (189), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 68/122 (55%), Gaps = 4/122 (3%)

Query: 237 APELIDWLSELNEAHKQLECKINPFLSKVQKGEIVMEGGVRYFELKQLLLLSYCQAITFY 296
           A +L   L E+ E    ++ KI    +KV K +     G  Y E K LLLL+YCQ++ +Y
Sbjct: 18  ASQLAALLKEMKEGLDNVKSKIQTLTAKV-KNQDSTADGFSYLEAKNLLLLNYCQSLVYY 76

Query: 297 LLLKSEGHPVHDHPVVARLAEIRELLDQIKQLDAKLPVGLEDILKESNGLETVVNSDNEN 356
           LL K++G  + +HPVV  + EIR  L++I+ +D K    ++ ++K S   E+  ++  E 
Sbjct: 77  LLRKAKGCSIEEHPVVRSIVEIRLFLEKIRPIDKKQQYQIQKLIKAS---ESATSNTGEK 133

Query: 357 AP 358
            P
Sbjct: 134 EP 135