Miyakogusa Predicted Gene

Lj1g3v3948260.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3948260.1 tr|Q4RFZ2|Q4RFZ2_TETNG Chromosome undetermined
SCAF15108, whole genome shotgun sequence
OS=Tetraodon,35.86,2e-18,RRM_1,RNA recognition motif domain;
RNA-binding domain, RBD,NULL; SUBFAMILY NOT NAMED,NULL;
UNCHARAC,CUFF.31696.1
         (445 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g085290.1 | RNA recognition motif, a.k.a. RRM, RBD protein...   614   e-176
Medtr7g085290.2 | RNA recognition motif, a.k.a. RRM, RBD protein...   568   e-162

>Medtr7g085290.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr7:33006796-33014305 | 20130731
          Length = 459

 Score =  614 bits (1584), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 328/455 (72%), Positives = 345/455 (75%), Gaps = 19/455 (4%)

Query: 5   QFGFQSTGTTMAESNPS-----ATLIIKHLPEAIPHDTLSRLLSHYNASSVRPCSAARLR 59
           QFGFQ  GTT  E NP      ATL+IKHLP+AIPHDTLSRLLSHY ASSVRPCSA RLR
Sbjct: 8   QFGFQ--GTT--EPNPCTVESPATLLIKHLPDAIPHDTLSRLLSHYGASSVRPCSAGRLR 63

Query: 60  NCAFVDFKNDMLASQAQRQLNGLRFLGKVLSAERAN-PIDNGEKSSGAQQGXXXXXXXXX 118
           NCAFVDFKNDMLASQAQRQLNGL+FLGKVLSAERA  P +N  KSSGAQ G         
Sbjct: 64  NCAFVDFKNDMLASQAQRQLNGLKFLGKVLSAERAGKPNENVGKSSGAQLGKDSKTSAVR 123

Query: 119 XXXXXX---EDTKSAGLPTPQPIADRLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVP 175
                     + KS G P P+PIA R+GVDYPFPPHLEYAYPPPDGNILTNIVNALIAVP
Sbjct: 124 SEDVIKPIDGEAKSGGFPIPEPIAHRIGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVP 183

Query: 176 RFYTQVLHLMNKMNIPAPFRMALXXXXXXXXXXXXXXXXXXXXXXXTAKPQXXXXXXXXX 235
           RFYTQVLHLMNKMNIPAPFRMAL                       TA P+         
Sbjct: 184 RFYTQVLHLMNKMNIPAPFRMALPTPPLPPEVPAPLPPVPPPHSV-TAMPRSANMSSDES 242

Query: 236 XXXXXXXXXGAR-----RKRARRETIVGPAIDKDVAHESVGVKPATLVPKEIPMIKKNPV 290
                    GAR     RKRARR  IVGPAIDKDVAHESVGVKPATL+PKEIPMIKKN V
Sbjct: 243 EMESSDEEGGARTGNHGRKRARRGAIVGPAIDKDVAHESVGVKPATLIPKEIPMIKKNLV 302

Query: 291 LKIKIAPKATLNEHKDDDTKQDLQEPENDIPDTNKFLTPDELERGKLPPEEILSLPMFKN 350
           LKI IAPKATLNEHKD+ T  +LQE E D  D NKFLTPDELERGKLPPEEILSLP FKN
Sbjct: 303 LKINIAPKATLNEHKDNATGIELQETEKDTLDPNKFLTPDELERGKLPPEEILSLPKFKN 362

Query: 351 YTPGNPAPVLYIKNLAKDVIADDFYFIFGSLFGNIEDAKSGLQVKLMQEGRMRGQAFLTF 410
           YTPGNPA VLYIKNLAKDV+ADDFY +FGS FG+ + AKSGLQVKLMQEGRM+GQAFLTF
Sbjct: 363 YTPGNPASVLYIKNLAKDVVADDFYLLFGSFFGSTDAAKSGLQVKLMQEGRMKGQAFLTF 422

Query: 411 PSTELAHHALNLVNGHVFKGKPMIIQFGRNPAAAK 445
           PSTELAH ALNLVNG+ FKGKPMIIQFGRNPAAAK
Sbjct: 423 PSTELAHQALNLVNGYKFKGKPMIIQFGRNPAAAK 457


>Medtr7g085290.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr7:33006796-33013419 | 20130731
          Length = 439

 Score =  568 bits (1463), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 305/430 (70%), Positives = 321/430 (74%), Gaps = 19/430 (4%)

Query: 5   QFGFQSTGTTMAESNPS-----ATLIIKHLPEAIPHDTLSRLLSHYNASSVRPCSAARLR 59
           QFGFQ  GTT  E NP      ATL+IKHLP+AIPHDTLSRLLSHY ASSVRPCSA RLR
Sbjct: 8   QFGFQ--GTT--EPNPCTVESPATLLIKHLPDAIPHDTLSRLLSHYGASSVRPCSAGRLR 63

Query: 60  NCAFVDFKNDMLASQAQRQLNGLRFLGKVLSAERAN-PIDNGEKSSGAQQGXXXXXXXXX 118
           NCAFVDFKNDMLASQAQRQLNGL+FLGKVLSAERA  P +N  KSSGAQ G         
Sbjct: 64  NCAFVDFKNDMLASQAQRQLNGLKFLGKVLSAERAGKPNENVGKSSGAQLGKDSKTSAVR 123

Query: 119 XXXXXX---EDTKSAGLPTPQPIADRLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVP 175
                     + KS G P P+PIA R+GVDYPFPPHLEYAYPPPDGNILTNIVNALIAVP
Sbjct: 124 SEDVIKPIDGEAKSGGFPIPEPIAHRIGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVP 183

Query: 176 RFYTQVLHLMNKMNIPAPFRMALXXXXXXXXXXXXXXXXXXXXXXXTAKPQXXXXXXXXX 235
           RFYTQVLHLMNKMNIPAPFRMAL                       TA P+         
Sbjct: 184 RFYTQVLHLMNKMNIPAPFRMALPTPPLPPEVPAPLPPVPPPHSV-TAMPRSANMSSDES 242

Query: 236 XXXXXXXXXGAR-----RKRARRETIVGPAIDKDVAHESVGVKPATLVPKEIPMIKKNPV 290
                    GAR     RKRARR  IVGPAIDKDVAHESVGVKPATL+PKEIPMIKKN V
Sbjct: 243 EMESSDEEGGARTGNHGRKRARRGAIVGPAIDKDVAHESVGVKPATLIPKEIPMIKKNLV 302

Query: 291 LKIKIAPKATLNEHKDDDTKQDLQEPENDIPDTNKFLTPDELERGKLPPEEILSLPMFKN 350
           LKI IAPKATLNEHKD+ T  +LQE E D  D NKFLTPDELERGKLPPEEILSLP FKN
Sbjct: 303 LKINIAPKATLNEHKDNATGIELQETEKDTLDPNKFLTPDELERGKLPPEEILSLPKFKN 362

Query: 351 YTPGNPAPVLYIKNLAKDVIADDFYFIFGSLFGNIEDAKSGLQVKLMQEGRMRGQAFLTF 410
           YTPGNPA VLYIKNLAKDV+ADDFY +FGS FG+ + AKSGLQVKLMQEGRM+GQAFLTF
Sbjct: 363 YTPGNPASVLYIKNLAKDVVADDFYLLFGSFFGSTDAAKSGLQVKLMQEGRMKGQAFLTF 422

Query: 411 PSTELAHHAL 420
           PSTELAH AL
Sbjct: 423 PSTELAHQAL 432