Miyakogusa Predicted Gene

Lj1g3v3948040.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3948040.1 Non Characterized Hit- tr|H0VB73|H0VB73_CAVPO
Uncharacterized protein OS=Cavia porcellus
GN=LOC10072,34.68,1e-18,seg,NULL; tRNA-intron endonuclease catalytic
domain-like,tRNA intron endonuclease, catalytic domain-,CUFF.31554.1
         (241 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g092500.1 | tRNA-splicing endonuclease subunit Sen2 | HC |...   359   1e-99
Medtr0262s0030.3 | tRNA-splicing endonuclease subunit Sen2 | HC ...   249   2e-66
Medtr0262s0030.2 | tRNA-splicing endonuclease subunit Sen2 | HC ...   249   2e-66
Medtr0262s0030.1 | tRNA-splicing endonuclease subunit Sen2 | HC ...   249   2e-66
Medtr0262s0030.4 | tRNA-splicing endonuclease subunit Sen2 | HC ...   249   2e-66
Medtr5g031400.1 | tRNA intron endonuclease | HC | chr5:13457460-...   132   3e-31
Medtr4g119190.1 | tRNA intron endonuclease, amine-terminal domai...    57   2e-08

>Medtr7g092500.1 | tRNA-splicing endonuclease subunit Sen2 | HC |
           chr7:36664633-36662946 | 20130731
          Length = 246

 Score =  359 bits (921), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 171/243 (70%), Positives = 189/243 (77%), Gaps = 3/243 (1%)

Query: 1   MAPRWXXXXXXXXXXXXXXXXXXPMSKTISHLQSSLVQSDACGFLSDNSVHLAVGAEQID 60
           MAPRW                  PMSK IS LQSSLVQS+ CGFLSDN VHL V AEQ+D
Sbjct: 1   MAPRWKGKDAKSKKEAEAEALKEPMSKIISQLQSSLVQSNTCGFLSDNCVHLTVQAEQLD 60

Query: 61  LFDKACFGQPVRTVEKDQHLFQLSFEEAFFLCCSLKCLKI---IRGDLGPQNDEELWHYM 117
           L DKACFG+PVR VEKD + FQL+ EEAF+LC SLKCLKI   +  D GP NDEELWHY 
Sbjct: 61  LLDKACFGRPVRIVEKDMYWFQLTVEEAFYLCYSLKCLKIKINVGADTGPLNDEELWHYF 120

Query: 118 KSKKEAFPCFYKAYSHLRMKNWVVKSGAQYGVDFVVYRHHPARIHSEYGILVLSDEDKKD 177
           +SKKE FP FYKAYSHLRMKNWVV+SGAQYGVD +VYRHHPAR+HSEYG+LVLS +   D
Sbjct: 121 RSKKETFPYFYKAYSHLRMKNWVVRSGAQYGVDLIVYRHHPARVHSEYGVLVLSHDKDGD 180

Query: 178 LNGRLGVWSDAHCITRLLGSVAKILLVMYVNKNGSSDESPSCLANYSVEERTIARWSPEL 237
           LNGRL VWSD HC TRLLG VAK LLV+YVNKNG++DES  CL NY+VEERTI+RWSPE 
Sbjct: 181 LNGRLRVWSDVHCTTRLLGGVAKTLLVLYVNKNGNNDESLLCLTNYTVEERTISRWSPEQ 240

Query: 238 CRE 240
           CRE
Sbjct: 241 CRE 243


>Medtr0262s0030.3 | tRNA-splicing endonuclease subunit Sen2 | HC |
           scaffold0262:8282-6329 | 20130731
          Length = 185

 Score =  249 bits (636), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 124/185 (67%), Positives = 139/185 (75%), Gaps = 1/185 (0%)

Query: 1   MAPRWXXXXXXXXXXXXXXXXXXPMSKTISHLQSSLVQSDACGFLSDNSVHLAVGAEQID 60
           MAPRW                  PMSK IS LQSSLVQS+ CGFLSDN VHLAV AEQ+D
Sbjct: 1   MAPRWKGKDAKSKKEAEAEALKEPMSKIISQLQSSLVQSNTCGFLSDNCVHLAVQAEQLD 60

Query: 61  LFDKACFGQPVRTVEKDQHLFQLSFEEAFFLCCSLKCLKIIRG-DLGPQNDEELWHYMKS 119
           L DKACFG+PVR V+KD + FQL+ EEAF+L  SLKCLKI  G D GP NDEELW   KS
Sbjct: 61  LLDKACFGRPVRIVDKDMYWFQLTVEEAFYLSYSLKCLKINDGADTGPLNDEELWCCFKS 120

Query: 120 KKEAFPCFYKAYSHLRMKNWVVKSGAQYGVDFVVYRHHPARIHSEYGILVLSDEDKKDLN 179
           KKE FP FYKAYSHLRMKNWVV+S +QYGVDF+VYRHHPA +HSEYG+LVLS ++  +LN
Sbjct: 121 KKETFPYFYKAYSHLRMKNWVVRSRSQYGVDFIVYRHHPAWVHSEYGVLVLSHDNDGELN 180

Query: 180 GRLGV 184
           GRL V
Sbjct: 181 GRLRV 185


>Medtr0262s0030.2 | tRNA-splicing endonuclease subunit Sen2 | HC |
           scaffold0262:8282-5694 | 20130731
          Length = 185

 Score =  249 bits (636), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 124/185 (67%), Positives = 139/185 (75%), Gaps = 1/185 (0%)

Query: 1   MAPRWXXXXXXXXXXXXXXXXXXPMSKTISHLQSSLVQSDACGFLSDNSVHLAVGAEQID 60
           MAPRW                  PMSK IS LQSSLVQS+ CGFLSDN VHLAV AEQ+D
Sbjct: 1   MAPRWKGKDAKSKKEAEAEALKEPMSKIISQLQSSLVQSNTCGFLSDNCVHLAVQAEQLD 60

Query: 61  LFDKACFGQPVRTVEKDQHLFQLSFEEAFFLCCSLKCLKIIRG-DLGPQNDEELWHYMKS 119
           L DKACFG+PVR V+KD + FQL+ EEAF+L  SLKCLKI  G D GP NDEELW   KS
Sbjct: 61  LLDKACFGRPVRIVDKDMYWFQLTVEEAFYLSYSLKCLKINDGADTGPLNDEELWCCFKS 120

Query: 120 KKEAFPCFYKAYSHLRMKNWVVKSGAQYGVDFVVYRHHPARIHSEYGILVLSDEDKKDLN 179
           KKE FP FYKAYSHLRMKNWVV+S +QYGVDF+VYRHHPA +HSEYG+LVLS ++  +LN
Sbjct: 121 KKETFPYFYKAYSHLRMKNWVVRSRSQYGVDFIVYRHHPAWVHSEYGVLVLSHDNDGELN 180

Query: 180 GRLGV 184
           GRL V
Sbjct: 181 GRLRV 185


>Medtr0262s0030.1 | tRNA-splicing endonuclease subunit Sen2 | HC |
           scaffold0262:8282-6329 | 20130731
          Length = 185

 Score =  249 bits (636), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 124/185 (67%), Positives = 139/185 (75%), Gaps = 1/185 (0%)

Query: 1   MAPRWXXXXXXXXXXXXXXXXXXPMSKTISHLQSSLVQSDACGFLSDNSVHLAVGAEQID 60
           MAPRW                  PMSK IS LQSSLVQS+ CGFLSDN VHLAV AEQ+D
Sbjct: 1   MAPRWKGKDAKSKKEAEAEALKEPMSKIISQLQSSLVQSNTCGFLSDNCVHLAVQAEQLD 60

Query: 61  LFDKACFGQPVRTVEKDQHLFQLSFEEAFFLCCSLKCLKIIRG-DLGPQNDEELWHYMKS 119
           L DKACFG+PVR V+KD + FQL+ EEAF+L  SLKCLKI  G D GP NDEELW   KS
Sbjct: 61  LLDKACFGRPVRIVDKDMYWFQLTVEEAFYLSYSLKCLKINDGADTGPLNDEELWCCFKS 120

Query: 120 KKEAFPCFYKAYSHLRMKNWVVKSGAQYGVDFVVYRHHPARIHSEYGILVLSDEDKKDLN 179
           KKE FP FYKAYSHLRMKNWVV+S +QYGVDF+VYRHHPA +HSEYG+LVLS ++  +LN
Sbjct: 121 KKETFPYFYKAYSHLRMKNWVVRSRSQYGVDFIVYRHHPAWVHSEYGVLVLSHDNDGELN 180

Query: 180 GRLGV 184
           GRL V
Sbjct: 181 GRLRV 185


>Medtr0262s0030.4 | tRNA-splicing endonuclease subunit Sen2 | HC |
           scaffold0262:8282-5995 | 20130731
          Length = 185

 Score =  249 bits (636), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 124/185 (67%), Positives = 139/185 (75%), Gaps = 1/185 (0%)

Query: 1   MAPRWXXXXXXXXXXXXXXXXXXPMSKTISHLQSSLVQSDACGFLSDNSVHLAVGAEQID 60
           MAPRW                  PMSK IS LQSSLVQS+ CGFLSDN VHLAV AEQ+D
Sbjct: 1   MAPRWKGKDAKSKKEAEAEALKEPMSKIISQLQSSLVQSNTCGFLSDNCVHLAVQAEQLD 60

Query: 61  LFDKACFGQPVRTVEKDQHLFQLSFEEAFFLCCSLKCLKIIRG-DLGPQNDEELWHYMKS 119
           L DKACFG+PVR V+KD + FQL+ EEAF+L  SLKCLKI  G D GP NDEELW   KS
Sbjct: 61  LLDKACFGRPVRIVDKDMYWFQLTVEEAFYLSYSLKCLKINDGADTGPLNDEELWCCFKS 120

Query: 120 KKEAFPCFYKAYSHLRMKNWVVKSGAQYGVDFVVYRHHPARIHSEYGILVLSDEDKKDLN 179
           KKE FP FYKAYSHLRMKNWVV+S +QYGVDF+VYRHHPA +HSEYG+LVLS ++  +LN
Sbjct: 121 KKETFPYFYKAYSHLRMKNWVVRSRSQYGVDFIVYRHHPAWVHSEYGVLVLSHDNDGELN 180

Query: 180 GRLGV 184
           GRL V
Sbjct: 181 GRLRV 185


>Medtr5g031400.1 | tRNA intron endonuclease | HC |
           chr5:13457460-13458403 | 20130731
          Length = 157

 Score =  132 bits (331), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 75/147 (51%), Positives = 84/147 (57%), Gaps = 38/147 (25%)

Query: 96  KCLKIIRGD--LGPQNDEELWHYMKSKKEAFPCFYKAYSHLRMKNWVVKSGAQYGVDFVV 153
           K L  I GD   GP NDEELW Y KSKK+AFPCFYK                 YGVD +V
Sbjct: 44  KALPKINGDADTGPLNDEELWCYFKSKKDAFPCFYK-----------------YGVDLIV 86

Query: 154 YRHHPARIHSEYGILVLSDEDKKDLNGRLGVWSDAHCITRLLGSVAKILLVMYVNKNGSS 213
           +R+HPAR+HSEY + VLS E    LN RL VWSD                   +NKN  S
Sbjct: 87  HRNHPARVHSEYCVFVLSHEIDDYLNERLRVWSD-------------------INKNVHS 127

Query: 214 DESPSCLANYSVEERTIARWSPELCRE 240
           DES  C  NY+VEERTI+RWSPE CRE
Sbjct: 128 DESLLCFTNYTVEERTISRWSPEQCRE 154


>Medtr4g119190.1 | tRNA intron endonuclease, amine-terminal domain
           protein | HC | chr4:49350386-49350186 | 20130731
          Length = 66

 Score = 56.6 bits (135), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/50 (58%), Positives = 36/50 (72%), Gaps = 3/50 (6%)

Query: 78  QHLFQLSFEEAFFLCCSLKCLKIIRGDL--GPQNDEELWHYMKSKKEAFP 125
           ++L  L+ EE F+LC SLKCLKI  GD+  GP N+EELW   KSKK+A P
Sbjct: 18  RYLCVLTLEEVFYLCYSLKCLKI-NGDVDTGPLNEEELWRNFKSKKDALP 66