Miyakogusa Predicted Gene
- Lj1g3v3945980.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v3945980.1 Non Characterized Hit- tr|A9NWW1|A9NWW1_PICSI
Putative uncharacterized protein OS=Picea sitchensis
P,45.22,4e-19,seg,NULL; PPR: pentatricopeptide repeat
domain,Pentatricopeptide repeat; PPR,Pentatricopeptide repea,66053_g.1
(124 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr7g085100.1 | PPR containing plant-like protein | HC | chr7:... 192 7e-50
Medtr3g088505.3 | PPR containing plant-like protein | HC | chr3:... 71 3e-13
Medtr3g088505.1 | PPR containing plant-like protein | HC | chr3:... 71 3e-13
Medtr3g088505.2 | PPR containing plant-like protein | HC | chr3:... 71 3e-13
Medtr3g088505.4 | PPR containing plant-like protein | HC | chr3:... 71 3e-13
Medtr8g071300.1 | PPR containing plant-like protein | HC | chr8:... 70 5e-13
Medtr2g060630.1 | PPR containing plant-like protein | HC | chr2:... 62 9e-11
Medtr5g006640.1 | PPR containing plant-like protein | HC | chr5:... 61 2e-10
Medtr1g108270.1 | PPR containing plant-like protein | HC | chr1:... 59 8e-10
Medtr1g056160.1 | PPR containing plant protein | HC | chr1:24577... 58 2e-09
Medtr1g056160.3 | PPR containing plant protein | HC | chr1:24576... 58 2e-09
Medtr1g056160.8 | PPR containing plant protein | HC | chr1:24576... 58 2e-09
Medtr1g056160.5 | PPR containing plant protein | HC | chr1:24576... 58 2e-09
Medtr1g056160.4 | PPR containing plant protein | HC | chr1:24576... 58 2e-09
Medtr1g056160.6 | PPR containing plant protein | HC | chr1:24576... 58 2e-09
Medtr1g056160.7 | PPR containing plant protein | HC | chr1:24576... 58 2e-09
Medtr1g056160.2 | PPR containing plant protein | HC | chr1:24576... 58 2e-09
Medtr2g016740.1 | PPR containing plant-like protein | HC | chr2:... 57 3e-09
Medtr3g114700.1 | PPR containing plant-like protein | HC | chr3:... 57 4e-09
Medtr2g104640.1 | PPR containing plant-like protein | HC | chr2:... 57 4e-09
Medtr7g029515.1 | PPR containing plant protein | HC | chr7:10579... 55 1e-08
Medtr3g045420.1 | PPR containing plant-like protein | HC | chr3:... 54 3e-08
Medtr1g086500.1 | PPR containing plant-like protein | HC | chr1:... 52 1e-07
Medtr6g045263.1 | PPR containing plant-like protein | HC | chr6:... 50 4e-07
Medtr6g045263.2 | PPR containing plant-like protein | HC | chr6:... 50 4e-07
Medtr3g078580.1 | PPR containing plant-like protein | HC | chr3:... 50 5e-07
Medtr1g100593.1 | PPR containing plant-like protein | HC | chr1:... 50 7e-07
Medtr1g100593.2 | PPR containing plant-like protein | HC | chr1:... 50 7e-07
Medtr8g102710.1 | PPR containing plant-like protein | HC | chr8:... 48 2e-06
Medtr7g075210.1 | PPR superfamily protein | LC | chr7:28087993-2... 48 3e-06
Medtr1g011520.1 | PPR containing plant-like protein | HC | chr1:... 47 3e-06
Medtr4g104800.1 | PPR containing plant protein | LC | chr4:43426... 47 4e-06
>Medtr7g085100.1 | PPR containing plant-like protein | HC |
chr7:32903829-32906178 | 20130731
Length = 585
Score = 192 bits (488), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 90/124 (72%), Positives = 97/124 (78%)
Query: 1 MHEPGSRPSEIKHKLEXXXXXXXXXXXXXXXXXIRNDWEAAFTFFLWAGKQPGYAHSVRE 60
+H+PGS P EIK KLE +RNDWEAAFTFFLWAGKQPGY HSVRE
Sbjct: 108 IHKPGSGPYEIKQKLEDCNVKASSELVVEVLSRVRNDWEAAFTFFLWAGKQPGYDHSVRE 167
Query: 61 YHSMISILGKMRKFDTAWNLIEVMRGGGTGPSLVTPQTLLIMIRKYCAVRDVGRAINTFY 120
YHSMIS+LGKMR+FDTAW L+E MR G TG S+VTPQTLLIMIRKYCAV DVGRAINTFY
Sbjct: 168 YHSMISVLGKMRRFDTAWALVEEMRRGKTGESIVTPQTLLIMIRKYCAVHDVGRAINTFY 227
Query: 121 AFKR 124
AFKR
Sbjct: 228 AFKR 231
>Medtr3g088505.3 | PPR containing plant-like protein | HC |
chr3:40228600-40232128 | 20130731
Length = 480
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 47/85 (55%), Gaps = 4/85 (4%)
Query: 40 AAFTFFLWAGKQPGYAHSVREYHSMISILGKMRKFDTAWNLIEVMRGGGTGPSLVTPQTL 99
+AF FF WA KQ Y+HS+R YH MI L K+R++ W L+ MR G +V +T
Sbjct: 79 SAFRFFEWAEKQRNYSHSIRAYHLMIESLAKIRQYQIMWELVNSMRKKG----MVNVETF 134
Query: 100 LIMIRKYCAVRDVGRAINTFYAFKR 124
I++RKY V A+ TF +
Sbjct: 135 CIIMRKYARAHKVDEAVYTFNVMDK 159
>Medtr3g088505.1 | PPR containing plant-like protein | HC |
chr3:40228600-40232138 | 20130731
Length = 480
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 47/85 (55%), Gaps = 4/85 (4%)
Query: 40 AAFTFFLWAGKQPGYAHSVREYHSMISILGKMRKFDTAWNLIEVMRGGGTGPSLVTPQTL 99
+AF FF WA KQ Y+HS+R YH MI L K+R++ W L+ MR G +V +T
Sbjct: 79 SAFRFFEWAEKQRNYSHSIRAYHLMIESLAKIRQYQIMWELVNSMRKKG----MVNVETF 134
Query: 100 LIMIRKYCAVRDVGRAINTFYAFKR 124
I++RKY V A+ TF +
Sbjct: 135 CIIMRKYARAHKVDEAVYTFNVMDK 159
>Medtr3g088505.2 | PPR containing plant-like protein | HC |
chr3:40228600-40232140 | 20130731
Length = 480
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 47/85 (55%), Gaps = 4/85 (4%)
Query: 40 AAFTFFLWAGKQPGYAHSVREYHSMISILGKMRKFDTAWNLIEVMRGGGTGPSLVTPQTL 99
+AF FF WA KQ Y+HS+R YH MI L K+R++ W L+ MR G +V +T
Sbjct: 79 SAFRFFEWAEKQRNYSHSIRAYHLMIESLAKIRQYQIMWELVNSMRKKG----MVNVETF 134
Query: 100 LIMIRKYCAVRDVGRAINTFYAFKR 124
I++RKY V A+ TF +
Sbjct: 135 CIIMRKYARAHKVDEAVYTFNVMDK 159
>Medtr3g088505.4 | PPR containing plant-like protein | HC |
chr3:40228600-40233968 | 20130731
Length = 480
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 47/85 (55%), Gaps = 4/85 (4%)
Query: 40 AAFTFFLWAGKQPGYAHSVREYHSMISILGKMRKFDTAWNLIEVMRGGGTGPSLVTPQTL 99
+AF FF WA KQ Y+HS+R YH MI L K+R++ W L+ MR G +V +T
Sbjct: 79 SAFRFFEWAEKQRNYSHSIRAYHLMIESLAKIRQYQIMWELVNSMRKKG----MVNVETF 134
Query: 100 LIMIRKYCAVRDVGRAINTFYAFKR 124
I++RKY V A+ TF +
Sbjct: 135 CIIMRKYARAHKVDEAVYTFNVMDK 159
>Medtr8g071300.1 | PPR containing plant-like protein | HC |
chr8:30270840-30266726 | 20130731
Length = 647
Score = 69.7 bits (169), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 41 AFTFFLWAGKQPGYAHSVREYHSMISILGKMRKFDTAWNLIEVMRGGGTGPSLVTPQTLL 100
A+ FF WA KQ Y HS Y +MI +L KMR+F W LI+ MR + L++PQ +
Sbjct: 131 AYRFFSWASKQTSYRHSQEVYKAMIKVLSKMRQFGAVWGLIDEMRVENS--ELISPQVFV 188
Query: 101 IMIRKYCAVRDVGRAINTF 119
I++R++ + R V +AI
Sbjct: 189 ILMRRFASARMVSKAIEVL 207
>Medtr2g060630.1 | PPR containing plant-like protein | HC |
chr2:25711944-25710341 | 20130731
Length = 497
Score = 62.4 bits (150), Expect = 9e-11, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Query: 35 RNDWEAAFTFFLWAGKQPGYAHSVREYHSMISILGKMRKFDTAWNLIEVMRGGGTGPSLV 94
R+DW+ AF FF W K Y S Y+ +I+ILGKM+ F+ +++ M +
Sbjct: 108 RSDWKPAFIFFKWVSKTNNYTPSCEVYNEIINILGKMKCFEELHQVLDEM---SQRKEFI 164
Query: 95 TPQTLLIMIRKYCAVRDVGRAINTFY 120
+T I+IR++ A + AIN FY
Sbjct: 165 NEETFCILIRRFVAAHKLEEAINIFY 190
>Medtr5g006640.1 | PPR containing plant-like protein | HC |
chr5:1017001-1018791 | 20130731
Length = 553
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 34/50 (68%)
Query: 36 NDWEAAFTFFLWAGKQPGYAHSVREYHSMISILGKMRKFDTAWNLIEVMR 85
NDW AA+ FF+WA KQ Y HS Y+ M+ ILGK ++FD W L++ M+
Sbjct: 146 NDWVAAYGFFIWAKKQTPYVHSPEVYNLMVDILGKAKEFDLMWKLVKEMK 195
>Medtr1g108270.1 | PPR containing plant-like protein | HC |
chr1:48926827-48924799 | 20130731
Length = 509
Score = 59.3 bits (142), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 4/79 (5%)
Query: 41 AFTFFLWAGKQPGYAHSVREYHSMISILGKMRKFDTAWNLIEVMRGGGTGPSLVTPQTLL 100
A +FF WA KQ G+ H+ +H++I LGK+R+F WNL++ M+ L+ T
Sbjct: 105 ALSFFRWAEKQQGFNHNTEIFHALIEALGKIRQFKMIWNLVDEMKQR----KLLNGDTFS 160
Query: 101 IMIRKYCAVRDVGRAINTF 119
++ R+Y + + A+ TF
Sbjct: 161 LIARRYVRAKVIKEALKTF 179
>Medtr1g056160.1 | PPR containing plant protein | HC |
chr1:24577487-24578941 | 20130731
Length = 484
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 35 RNDWEAAFTFFLWAGKQPGYAHSVREYHSMISILGKMRKFDTAWNLIEVMRGGGTGPSLV 94
++DW++A F WAG + HS + Y M+ ILG+M+ D ++E MR SL+
Sbjct: 80 KDDWKSALAIFRWAGSHSNFKHSQQSYDMMVDILGRMKAMDKMREILEEMR----QESLI 135
Query: 95 TPQTLLIMIRKYCAVRDVGRAINTF 119
T T+ ++R++ R A+ F
Sbjct: 136 TLNTIAKVMRRFVGARQWKDAVRIF 160
>Medtr1g056160.3 | PPR containing plant protein | HC |
chr1:24576326-24582031 | 20130731
Length = 501
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 35 RNDWEAAFTFFLWAGKQPGYAHSVREYHSMISILGKMRKFDTAWNLIEVMRGGGTGPSLV 94
++DW++A F WAG + HS + Y M+ ILG+M+ D ++E MR SL+
Sbjct: 97 KDDWKSALAIFRWAGSHSNFKHSQQSYDMMVDILGRMKAMDKMREILEEMR----QESLI 152
Query: 95 TPQTLLIMIRKYCAVRDVGRAINTF 119
T T+ ++R++ R A+ F
Sbjct: 153 TLNTIAKVMRRFVGARQWKDAVRIF 177
>Medtr1g056160.8 | PPR containing plant protein | HC |
chr1:24576341-24582031 | 20130731
Length = 501
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 35 RNDWEAAFTFFLWAGKQPGYAHSVREYHSMISILGKMRKFDTAWNLIEVMRGGGTGPSLV 94
++DW++A F WAG + HS + Y M+ ILG+M+ D ++E MR SL+
Sbjct: 97 KDDWKSALAIFRWAGSHSNFKHSQQSYDMMVDILGRMKAMDKMREILEEMR----QESLI 152
Query: 95 TPQTLLIMIRKYCAVRDVGRAINTF 119
T T+ ++R++ R A+ F
Sbjct: 153 TLNTIAKVMRRFVGARQWKDAVRIF 177
>Medtr1g056160.5 | PPR containing plant protein | HC |
chr1:24576341-24581268 | 20130731
Length = 501
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 35 RNDWEAAFTFFLWAGKQPGYAHSVREYHSMISILGKMRKFDTAWNLIEVMRGGGTGPSLV 94
++DW++A F WAG + HS + Y M+ ILG+M+ D ++E MR SL+
Sbjct: 97 KDDWKSALAIFRWAGSHSNFKHSQQSYDMMVDILGRMKAMDKMREILEEMR----QESLI 152
Query: 95 TPQTLLIMIRKYCAVRDVGRAINTF 119
T T+ ++R++ R A+ F
Sbjct: 153 TLNTIAKVMRRFVGARQWKDAVRIF 177
>Medtr1g056160.4 | PPR containing plant protein | HC |
chr1:24576341-24581268 | 20130731
Length = 501
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 35 RNDWEAAFTFFLWAGKQPGYAHSVREYHSMISILGKMRKFDTAWNLIEVMRGGGTGPSLV 94
++DW++A F WAG + HS + Y M+ ILG+M+ D ++E MR SL+
Sbjct: 97 KDDWKSALAIFRWAGSHSNFKHSQQSYDMMVDILGRMKAMDKMREILEEMR----QESLI 152
Query: 95 TPQTLLIMIRKYCAVRDVGRAINTF 119
T T+ ++R++ R A+ F
Sbjct: 153 TLNTIAKVMRRFVGARQWKDAVRIF 177
>Medtr1g056160.6 | PPR containing plant protein | HC |
chr1:24576326-24581268 | 20130731
Length = 501
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 35 RNDWEAAFTFFLWAGKQPGYAHSVREYHSMISILGKMRKFDTAWNLIEVMRGGGTGPSLV 94
++DW++A F WAG + HS + Y M+ ILG+M+ D ++E MR SL+
Sbjct: 97 KDDWKSALAIFRWAGSHSNFKHSQQSYDMMVDILGRMKAMDKMREILEEMR----QESLI 152
Query: 95 TPQTLLIMIRKYCAVRDVGRAINTF 119
T T+ ++R++ R A+ F
Sbjct: 153 TLNTIAKVMRRFVGARQWKDAVRIF 177
>Medtr1g056160.7 | PPR containing plant protein | HC |
chr1:24576340-24582031 | 20130731
Length = 501
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 35 RNDWEAAFTFFLWAGKQPGYAHSVREYHSMISILGKMRKFDTAWNLIEVMRGGGTGPSLV 94
++DW++A F WAG + HS + Y M+ ILG+M+ D ++E MR SL+
Sbjct: 97 KDDWKSALAIFRWAGSHSNFKHSQQSYDMMVDILGRMKAMDKMREILEEMR----QESLI 152
Query: 95 TPQTLLIMIRKYCAVRDVGRAINTF 119
T T+ ++R++ R A+ F
Sbjct: 153 TLNTIAKVMRRFVGARQWKDAVRIF 177
>Medtr1g056160.2 | PPR containing plant protein | HC |
chr1:24576341-24582024 | 20130731
Length = 501
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 35 RNDWEAAFTFFLWAGKQPGYAHSVREYHSMISILGKMRKFDTAWNLIEVMRGGGTGPSLV 94
++DW++A F WAG + HS + Y M+ ILG+M+ D ++E MR SL+
Sbjct: 97 KDDWKSALAIFRWAGSHSNFKHSQQSYDMMVDILGRMKAMDKMREILEEMR----QESLI 152
Query: 95 TPQTLLIMIRKYCAVRDVGRAINTF 119
T T+ ++R++ R A+ F
Sbjct: 153 TLNTIAKVMRRFVGARQWKDAVRIF 177
>Medtr2g016740.1 | PPR containing plant-like protein | HC |
chr2:5175787-5177502 | 20130731
Length = 489
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 41 AFTFFLWAGKQPGYAHSVREYHSMISILGKMRKFDTAWNLIEVMRGGGTGPSLVTPQTLL 100
AF FF W GK+ + H R Y++M+ ILGK R+F+T L+E M G +T T
Sbjct: 65 AFRFFCWVGKRRDFEHDSRTYNTMMDILGKTRQFETMVALLEEMGEKG----FLTMDTFS 120
Query: 101 IMIRKYCAVRDVGRAINTFYAFKR 124
I I+ + + ++ +A+ F K+
Sbjct: 121 IAIKAFASAKERKKAVGVFDLMKK 144
>Medtr3g114700.1 | PPR containing plant-like protein | HC |
chr3:53562677-53565345 | 20130731
Length = 530
Score = 57.0 bits (136), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 6/84 (7%)
Query: 41 AFTFFLWAGKQPGYAHSVREYHSMISILGKMRKFDTAWNLIEVMRGGGTGPSLVTPQTLL 100
+ FF WA G+ S Y+ MI + GK+R FD AW+LI++M+ G +T T
Sbjct: 126 SLAFFNWATTLEGFPSSPEPYNEMIDLAGKLRHFDLAWHLIDLMKSRGVR---ITVSTFS 182
Query: 101 IMIRKYCAVRDVGRAINTFYAFKR 124
+++R+Y VR G A +AF R
Sbjct: 183 VLVRRY--VR-AGLAAEAVHAFNR 203
>Medtr2g104640.1 | PPR containing plant-like protein | HC |
chr2:45047143-45044400 | 20130731
Length = 487
Score = 57.0 bits (136), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 36 NDWEAAFTFFLWAGKQPGYAHSVREYHSMISILGKMRKFDTAWNLIEVMRGGGTGPSLVT 95
ND++ A FF W + + HS Y+ ++ ILGK +F WNLI MR SL
Sbjct: 88 NDYKRALEFFNWVETKFKFQHSTETYNLVLDILGKFFEFQQCWNLIHRMRQN--PHSLPN 145
Query: 96 PQTLLIMIRKYCAVRDVGRAINTF 119
T +M ++Y + V A+NTF
Sbjct: 146 HTTFRVMFKRYVSAHCVQDAVNTF 169
>Medtr7g029515.1 | PPR containing plant protein | HC |
chr7:10579080-10580534 | 20130731
Length = 484
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 35 RNDWEAAFTFFLWAGKQPGYAHSVREYHSMISILGKMRKFDTAWNLIEVMRGGGTGPSLV 94
++DW++A F WA + HS + Y M+ ILG+M+ D ++E MR SL+
Sbjct: 80 KDDWKSALAIFRWASSHSNFKHSQQSYDMMVDILGRMKAMDKMREILEEMR----QESLI 135
Query: 95 TPQTLLIMIRKYCAVRDVGRAINTF 119
T T+ ++R++ R A+ F
Sbjct: 136 TLDTIAKVMRRFVGARQWKDAVRIF 160
>Medtr3g045420.1 | PPR containing plant-like protein | HC |
chr3:14773131-14777409 | 20130731
Length = 903
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 37 DWEAAFTFFLWAGKQPGYAHSVREYHSMISILGKMRKFDTAWNLIEVMRGGGTGPSLVTP 96
D A +FF W +QP + H Y +M+ ILG+ R+F NL+E M G P++VT
Sbjct: 386 DHSVALSFFYWLKRQPSFRHDGHTYTTMVGILGRAREFGAINNLLEQMVKDGCQPNVVTY 445
Query: 97 QTLLIMIRKYCAVRDVGRAINTF 119
L I Y + A+N F
Sbjct: 446 NRL---IHSYGRANYLKEALNVF 465
>Medtr1g086500.1 | PPR containing plant-like protein | HC |
chr1:38701697-38699329 | 20130731
Length = 518
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 47/85 (55%), Gaps = 4/85 (4%)
Query: 41 AFTFFLWAGKQPGYAHSVREYHSMISILGKMRKFDTAWN-LIEVMRGGGTGPSLVTPQTL 99
FF + G++ G+ H+ +M+ ILG+ R FD W LIE R +++TP+T+
Sbjct: 77 TLEFFRYTGRRKGFYHTAYSLDTMLYILGRSRMFDHVWELLIEARR---KDQNVITPRTV 133
Query: 100 LIMIRKYCAVRDVGRAINTFYAFKR 124
++++ + V V + + TF FK+
Sbjct: 134 MVVLGRVAKVCSVRQTVETFRKFKK 158
>Medtr6g045263.1 | PPR containing plant-like protein | HC |
chr6:16192167-16188301 | 20130731
Length = 508
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Query: 41 AFTFFLWAGKQPGYAHSVREYHSMISILGKMRKFDTAWNLIEVMRGGGTGPSLVTPQTLL 100
A+ FF+W G++ GY H+V YH ++ I + +F W L++ M G VT +T
Sbjct: 165 AYKFFVWCGQKEGYCHTVNSYHLIMQIFAECEEFKAMWRLVDEMIEKGFP---VTARTFN 221
Query: 101 IMIRKYCAVRDVGRAINTFYAF 122
I+I C + G A N F
Sbjct: 222 ILI---CTSGEAGFARNLVVKF 240
>Medtr6g045263.2 | PPR containing plant-like protein | HC |
chr6:16192577-16189964 | 20130731
Length = 532
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Query: 41 AFTFFLWAGKQPGYAHSVREYHSMISILGKMRKFDTAWNLIEVMRGGGTGPSLVTPQTLL 100
A+ FF+W G++ GY H+V YH ++ I + +F W L++ M G VT +T
Sbjct: 189 AYKFFVWCGQKEGYCHTVNSYHLIMQIFAECEEFKAMWRLVDEMIEKGFP---VTARTFN 245
Query: 101 IMIRKYCAVRDVGRAINTFYAF 122
I+I C + G A N F
Sbjct: 246 ILI---CTSGEAGFARNLVVKF 264
>Medtr3g078580.1 | PPR containing plant-like protein | HC |
chr3:35401646-35399196 | 20130731
Length = 490
Score = 50.1 bits (118), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Query: 36 NDWEAAFTFFLWAGKQPGYAHSVREYHSMISILGKMRKFDTAWNLIEVMRGGGTGPSLVT 95
N A FF + P Y HS+ + + I ++R+++TAW L+ MR GP T
Sbjct: 78 NHGPKALQFFKHLDRHPTYIHSISSFEHAVDIAARLREYNTAWALMGRMRALRLGP---T 134
Query: 96 PQTLLIMIRKYCAVRDVGRAINTFYAF 122
P+T I+ +Y +A+ F +
Sbjct: 135 PKTFAILAERYATGGKAHKAVKVFLSM 161
>Medtr1g100593.1 | PPR containing plant-like protein | HC |
chr1:45524249-45521592 | 20130731
Length = 501
Score = 49.7 bits (117), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 41 AFTFFLWAGKQPGYAHSVREYHSMISILGKMRKFDTAWNLIEVMRGGGTGPSLVTPQTLL 100
A+ FF+W G+Q Y H+ YH +++I + ++F W L++ M G G T +T
Sbjct: 144 AYKFFVWCGQQEDYRHTANAYHLIMNIYAECKEFKALWRLVDEMIGKGYKA---TARTFN 200
Query: 101 IMIR 104
I+IR
Sbjct: 201 ILIR 204
>Medtr1g100593.2 | PPR containing plant-like protein | HC |
chr1:45524249-45520736 | 20130731
Length = 501
Score = 49.7 bits (117), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 41 AFTFFLWAGKQPGYAHSVREYHSMISILGKMRKFDTAWNLIEVMRGGGTGPSLVTPQTLL 100
A+ FF+W G+Q Y H+ YH +++I + ++F W L++ M G G T +T
Sbjct: 144 AYKFFVWCGQQEDYRHTANAYHLIMNIYAECKEFKALWRLVDEMIGKGYKA---TARTFN 200
Query: 101 IMIR 104
I+IR
Sbjct: 201 ILIR 204
>Medtr8g102710.1 | PPR containing plant-like protein | HC |
chr8:43240632-43242952 | 20130731
Length = 520
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 40 AAFTFFLWAGKQPGYAHSVREYHSMISILGKMRKFDTAWNLIEVMRGGGTGPSLVTPQTL 99
+A FFLWA PG+ HSV+ +H ++ ILG+ ++F W+ + R + +T +
Sbjct: 89 SAHRFFLWAKSIPGFQHSVQSFHILVEILGRSKQFAILWDFLIETRESDSSCK-ITNEIF 147
Query: 100 LIMIRKYCAVRDVGRAINTF 119
I+ Y AI +F
Sbjct: 148 WIIFTAYSRADLPDGAIRSF 167
>Medtr7g075210.1 | PPR superfamily protein | LC |
chr7:28087993-28086890 | 20130731
Length = 280
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 31/50 (62%)
Query: 35 RNDWEAAFTFFLWAGKQPGYAHSVREYHSMISILGKMRKFDTAWNLIEVM 84
R+DW+ AF FF W K Y S Y+ +I+ILGKM++F+ +++ M
Sbjct: 127 RSDWKPAFIFFKWVTKTNNYTPSCEVYNEIINILGKMKRFEELHQVLDEM 176
>Medtr1g011520.1 | PPR containing plant-like protein | HC |
chr1:2060030-2064273 | 20130731
Length = 587
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 43 TFFLWAGKQPGYAHSVREYHSMISILGKMRKFDTAWNLI--EVMRGGGTGPSLVTPQTLL 100
+ +LWA QPG+ + S+I+ L KM++FD AW+L+ + R LV+ T
Sbjct: 123 SLYLWALNQPGFKPDSSLFDSVINALAKMKEFDDAWSLVLDRIRRDDDDDEKLVSVGTFA 182
Query: 101 IMIRKYCAVRDVGRAINTF 119
I+IR+Y AI TF
Sbjct: 183 IIIRRYARAGMHKAAIRTF 201
>Medtr4g104800.1 | PPR containing plant protein | LC |
chr4:43426065-43428441 | 20130731
Length = 637
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%)
Query: 9 SEIKHKLEXXXXXXXXXXXXXXXXXIRNDWEAAFTFFLWAGKQPGYAHSVREYHSMISIL 68
+EI+++LE +RN A+ FF W GKQ GY + Y+++ +L
Sbjct: 219 NEIENELEKVKIQLSDNFVIRVMKELRNSPLKAYKFFHWVGKQSGYLQNTVTYNAVARVL 278
Query: 69 GKMRKFDTAWNLIEVMRGGGTGPSLVT 95
+M + W+++E M+ G L T
Sbjct: 279 PRMESIEKFWSILEEMKSVGHELDLDT 305