Miyakogusa Predicted Gene

Lj1g3v3944820.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3944820.1 Non Characterized Hit- tr|J3M5T7|J3M5T7_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB05G1,40.4,0.000000000002,zf-C3Hc3H,Potential DNA-binding domain;
seg,NULL,CUFF.31536.1
         (232 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g084890.1 | DNA-binding domain protein, putative | HC | ch...   278   4e-75
Medtr1g116580.1 | DNA-binding domain protein, putative | HC | ch...   120   8e-28

>Medtr7g084890.1 | DNA-binding domain protein, putative | HC |
           chr7:32797448-32800453 | 20130731
          Length = 233

 Score =  278 bits (710), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 145/220 (65%), Positives = 177/220 (80%), Gaps = 6/220 (2%)

Query: 12  MAIDGADQDAALANSTVLSRSEVIARRLRRVKQLARCYRGHYWALMEDLKSKYRDYYWTY 71
           M IDGAD+D ALA S+VL+R EV+ RRLRRV+QL+RCYRGHYWALME+LK+KYR+YYWTY
Sbjct: 15  MTIDGADEDLALAASSVLTRREVLVRRLRRVRQLSRCYRGHYWALMEELKAKYREYYWTY 74

Query: 72  GKSPFKDDDHGGANGTVVSEEKVNGTADHASA-AAGVDFVRCASGGCKTKAMAMSRFCHA 130
           G+SPFK+D+   +NG      + +G A  A A   G DFVRCA  GCKTKAMA++++CHA
Sbjct: 75  GRSPFKEDEERNSNGV-----RDSGNASAAGAFDNGDDFVRCAYTGCKTKAMALTKYCHA 129

Query: 131 HIVFDTKQKLYVGCTTVAKNLPTGPSFCNKPVLTSVVPRSCHQHYQLGEKCLTRAIRRAG 190
           HI+ D  QKLY GCT VAK+LPTGP FCNKPVL S+VP  C  HYQLGEKCL RA++RAG
Sbjct: 130 HILSDPNQKLYRGCTAVAKSLPTGPVFCNKPVLRSMVPLVCPAHYQLGEKCLLRAVKRAG 189

Query: 191 YNIPINRKPSLPLHVVIPEFVREIQNKRKVALKATVPKPE 230
           +N+P+N KPS  LH++IPEFVR+IQNKRK A KA +PKP+
Sbjct: 190 HNVPVNGKPSPQLHLLIPEFVRQIQNKRKAARKAALPKPK 229


>Medtr1g116580.1 | DNA-binding domain protein, putative | HC |
           chr1:52745275-52746559 | 20130731
          Length = 221

 Score =  120 bits (302), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 73/208 (35%), Positives = 109/208 (52%), Gaps = 24/208 (11%)

Query: 15  DGADQDAALANSTVLSRSEVIARRLRRVKQLARCYRGHYWALMEDLKSKYRDYYWTYGKS 74
           D ++  + L+ +T L+R EV+ RRL   ++L+  Y+  YW LM +L++ + +Y    G +
Sbjct: 14  DKSNPSSPLSTATCLTRPEVLTRRLNNFRRLSNIYKDEYWHLMAELRNAHSEYV-AIGLN 72

Query: 75  PFKDDDHGGANGTVVSEEKVNGTADHASAAAGVDFVRCASGGCKTKAMAMSRFCHAHIVF 134
           PF+D+              V         A       CA  GC+T+ M ++ FC AHI+ 
Sbjct: 73  PFQDE--------------VEEPQPQPEPAV------CAFEGCQTRPMPLTPFCFAHILS 112

Query: 135 DTKQKLYVGCTTV---AKNLPTGPSFCNKPVLTSVVPRSCHQHYQLGEKCLTRAIRRAGY 191
           D +Q LY  C  V   A+    G   C KP+L++ VP  C  H QLG+  LTRA++ AG 
Sbjct: 113 DPRQVLYKPCEFVIASAQAGHAGSVTCRKPILSTRVPAYCDVHMQLGQMHLTRALQGAGL 172

Query: 192 NIPINRKPSLPLHVVIPEFVREIQNKRK 219
           NI    +    LH +I EFVR+IQ KR+
Sbjct: 173 NIFSASQVQPQLHHLIAEFVRQIQAKRR 200