Miyakogusa Predicted Gene

Lj1g3v3905680.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3905680.1 Non Characterized Hit- tr|B9RTS1|B9RTS1_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,42.68,0.000000002,seg,NULL,
NODE_77065_length_713_cov_75.598877.path2.1
         (148 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g103830.3 | RING/FYVE/PHD zinc finger protein, putative | ...    74   7e-14
Medtr1g103830.1 | RING/FYVE/PHD zinc finger protein, putative | ...    74   7e-14
Medtr1g103830.2 | RING/FYVE/PHD zinc finger protein, putative | ...    74   7e-14

>Medtr1g103830.3 | RING/FYVE/PHD zinc finger protein, putative | HC
           | chr1:46996609-46987224 | 20130731
          Length = 1673

 Score = 73.6 bits (179), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 69/158 (43%), Positives = 88/158 (55%), Gaps = 21/158 (13%)

Query: 1   MEPGMRSGN-SGAVVKNRNSSGCLIVRKKXXXXXXXXXXXXXXXXSSNSRKLYESMKRPN 59
           MEPG R G+ SG VVKNR+SSGCLIVRKK                 S+SRK ++S K   
Sbjct: 1   MEPGTRIGSPSGVVVKNRSSSGCLIVRKK-----GDGLGGGVGGGGSSSRKQFDSKKVRK 55

Query: 60  INNVPFTDSESSDELSLPMPKRHVRRLGPETIRVGNS---------GMIGRSEVISKRGR 110
              V    S+S     L MP    RRLGPETIRV NS         G +G  E+  KR R
Sbjct: 56  KVKVEVDSSDSESSGELVMPSG--RRLGPETIRVCNSLSALERGGGGNVGGGEISRKRER 113

Query: 111 MEQQVRGNGEGMIAEDGLDWRERKRGRLDMNVSDYGEH 148
           ME Q+R NG+GM+  +GL+ RE+K   + ++V D+ E+
Sbjct: 114 ME-QIRRNGDGMVEGNGLERREKK---VKLDVFDFDEY 147


>Medtr1g103830.1 | RING/FYVE/PHD zinc finger protein, putative | HC
           | chr1:46996609-46987224 | 20130731
          Length = 1673

 Score = 73.6 bits (179), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 69/158 (43%), Positives = 88/158 (55%), Gaps = 21/158 (13%)

Query: 1   MEPGMRSGN-SGAVVKNRNSSGCLIVRKKXXXXXXXXXXXXXXXXSSNSRKLYESMKRPN 59
           MEPG R G+ SG VVKNR+SSGCLIVRKK                 S+SRK ++S K   
Sbjct: 1   MEPGTRIGSPSGVVVKNRSSSGCLIVRKK-----GDGLGGGVGGGGSSSRKQFDSKKVRK 55

Query: 60  INNVPFTDSESSDELSLPMPKRHVRRLGPETIRVGNS---------GMIGRSEVISKRGR 110
              V    S+S     L MP    RRLGPETIRV NS         G +G  E+  KR R
Sbjct: 56  KVKVEVDSSDSESSGELVMPSG--RRLGPETIRVCNSLSALERGGGGNVGGGEISRKRER 113

Query: 111 MEQQVRGNGEGMIAEDGLDWRERKRGRLDMNVSDYGEH 148
           ME Q+R NG+GM+  +GL+ RE+K   + ++V D+ E+
Sbjct: 114 ME-QIRRNGDGMVEGNGLERREKK---VKLDVFDFDEY 147


>Medtr1g103830.2 | RING/FYVE/PHD zinc finger protein, putative | HC
           | chr1:46996609-46987224 | 20130731
          Length = 1673

 Score = 73.6 bits (179), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 69/158 (43%), Positives = 88/158 (55%), Gaps = 21/158 (13%)

Query: 1   MEPGMRSGN-SGAVVKNRNSSGCLIVRKKXXXXXXXXXXXXXXXXSSNSRKLYESMKRPN 59
           MEPG R G+ SG VVKNR+SSGCLIVRKK                 S+SRK ++S K   
Sbjct: 1   MEPGTRIGSPSGVVVKNRSSSGCLIVRKK-----GDGLGGGVGGGGSSSRKQFDSKKVRK 55

Query: 60  INNVPFTDSESSDELSLPMPKRHVRRLGPETIRVGNS---------GMIGRSEVISKRGR 110
              V    S+S     L MP    RRLGPETIRV NS         G +G  E+  KR R
Sbjct: 56  KVKVEVDSSDSESSGELVMPSG--RRLGPETIRVCNSLSALERGGGGNVGGGEISRKRER 113

Query: 111 MEQQVRGNGEGMIAEDGLDWRERKRGRLDMNVSDYGEH 148
           ME Q+R NG+GM+  +GL+ RE+K   + ++V D+ E+
Sbjct: 114 ME-QIRRNGDGMVEGNGLERREKK---VKLDVFDFDEY 147