Miyakogusa Predicted Gene

Lj1g3v3904400.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3904400.1 Non Characterized Hit- tr|J3LXE0|J3LXE0_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB04G1,28.12,2e-16,seg,NULL; coiled-coil,NULL,CUFF.31477.1
         (445 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g084070.1 | hypothetical protein | HC | chr7:32409614-3241...   422   e-118

>Medtr7g084070.1 | hypothetical protein | HC |
           chr7:32409614-32412425 | 20130731
          Length = 401

 Score =  422 bits (1086), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 236/356 (66%), Positives = 268/356 (75%), Gaps = 39/356 (10%)

Query: 95  PTKPSDYDDEQWEIRSGIGLDSTLDFEEEEDQYDKQAVGNENSGDRVYMKDITDDRVEIS 154
           P+KPSDY+DEQWEIRS IGLD TLDFE+EED YDKQA+G E  GDR+YM +I +D     
Sbjct: 80  PSKPSDYNDEQWEIRSSIGLDCTLDFEDEEDHYDKQALGKEGRGDRLYMSEINED----- 134

Query: 155 PCDRVYMRDMTDDGVEISSCGVLPTKFREFERDLRANHMAARIRLKQDEEATKEIGALHV 214
                        G+ ISS       F +F RD RANH AARI+LKQD EA  +I  LHV
Sbjct: 135 -------------GIGISS-----RAFGDFSRDPRANHTAARIKLKQDAEAANQIDTLHV 176

Query: 215 SEKSPPDISXXXXXXDAVNPKSILKSRENPSEPKPQKRVRFDSECDGKGDDE---ENEGT 271
           SEK  PDI+      DAVNPKSILKS++NPSE +P KRVRFDSECD +  ++   E EGT
Sbjct: 177 SEKPTPDIAGGGG--DAVNPKSILKSKDNPSESRPNKRVRFDSECDDRDGNDDEDEKEGT 234

Query: 272 RDVRRKTTSMEEEEVEALNQPSKAQEFASAVPDYIRNPSRYTHYTFDSASDMDDKANKEA 331
           RDVR KT+SMEE+   ALNQPSK+QEFASAVPDYIRNPS+YTHYTFDS++DMDDKANKEA
Sbjct: 235 RDVRMKTSSMEEDA--ALNQPSKSQEFASAVPDYIRNPSKYTHYTFDSSTDMDDKANKEA 292

Query: 332 YMGFLAQMKGT-GSQADDALDDLPSVTFISKKKSSDVTMVENEMVSRQKLDVGKESMNKK 390
           YM FLAQ+KG+  SQAD+ALDDLPSVTFI KKKS DVTM EN      KL+VGKE MNKK
Sbjct: 293 YMSFLAQIKGSNASQADEALDDLPSVTFIPKKKSGDVTMGEN------KLEVGKEGMNKK 346

Query: 391 AFPVSIAAAGDNENSDVCAMEEDEPEVMEDAKKSSQRLNNRKYRKKP-QELEEHVV 445
           AFPVSIAA  D ENSDVCAMEEDE EV+ED KKSSQ+ +NRKYRKK   +LEE  V
Sbjct: 347 AFPVSIAADDDTENSDVCAMEEDEHEVIEDTKKSSQK-SNRKYRKKTDDDLEEPTV 401