Miyakogusa Predicted Gene

Lj1g3v3904340.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3904340.1 NODE_65629_length_412_cov_7.859223.path1.1
         (82 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g084020.1 | RING finger protein | HC | chr7:32376240-32370...    77   3e-15

>Medtr7g084020.1 | RING finger protein | HC | chr7:32376240-32370124
           | 20130731
          Length = 744

 Score = 77.4 bits (189), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 40/66 (60%), Positives = 43/66 (65%), Gaps = 3/66 (4%)

Query: 18  SIPRSNVWSAHGNG-GRRRESRDQRWKNAPAADGQHLILHPLNMKCLLHHYGSYDTLPHR 76
           S    N    H NG G  +E  +  +    A DGQHLILHPLN KCLLHHYGSYD LPHR
Sbjct: 470 SYEEKNCIQGHSNGIGDAKE--NDSYNFYQAVDGQHLILHPLNTKCLLHHYGSYDKLPHR 527

Query: 77  ISGRIL 82
           ISGRIL
Sbjct: 528 ISGRIL 533