Miyakogusa Predicted Gene

Lj1g3v3903020.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3903020.1 Non Characterized Hit- tr|C0P5C2|C0P5C2_MAIZE
Uncharacterized protein OS=Zea mays PE=2 SV=1,46.43,2e-18,no
description,Nucleic acid-binding, OB-fold; seg,NULL; SUBFAMILY NOT
NAMED,NULL; FAMILY NOT NAMED,N,gene.g35607.t1.1
         (205 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g019090.1 | RNA-binding KH domain protein | HC | chr2:6163...   115   3e-26
Medtr2g019090.2 | RNA-binding KH domain protein | HC | chr2:6163...   115   3e-26
Medtr4g071090.1 | minichromosome maintenance (MCM2/3/5) family p...   113   2e-25

>Medtr2g019090.1 | RNA-binding KH domain protein | HC |
           chr2:6163835-6158039 | 20130731
          Length = 631

 Score =  115 bits (288), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 58/73 (79%), Positives = 65/73 (89%)

Query: 97  TVKSMRQASGARIEVDDSKANHDECLIIITTTESPSDLKSMSVEAVLLIKGKISDEDDTE 156
           T+K MRQASGARIEVDDSKA HDECLI IT TES SDLKS++VEAVLL++ KI+DEDD  
Sbjct: 333 TIKRMRQASGARIEVDDSKARHDECLITITATESTSDLKSVAVEAVLLLQEKINDEDDAP 392

Query: 157 VSIQLLVPSKVIG 169
           VSI+LLVPSKVIG
Sbjct: 393 VSIRLLVPSKVIG 405


>Medtr2g019090.2 | RNA-binding KH domain protein | HC |
           chr2:6163891-6155394 | 20130731
          Length = 628

 Score =  115 bits (287), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 58/73 (79%), Positives = 65/73 (89%)

Query: 97  TVKSMRQASGARIEVDDSKANHDECLIIITTTESPSDLKSMSVEAVLLIKGKISDEDDTE 156
           T+K MRQASGARIEVDDSKA HDECLI IT TES SDLKS++VEAVLL++ KI+DEDD  
Sbjct: 334 TIKRMRQASGARIEVDDSKARHDECLITITATESTSDLKSVAVEAVLLLQEKINDEDDAP 393

Query: 157 VSIQLLVPSKVIG 169
           VSI+LLVPSKVIG
Sbjct: 394 VSIRLLVPSKVIG 406


>Medtr4g071090.1 | minichromosome maintenance (MCM2/3/5) family
           protein | HC | chr4:26787983-26782650 | 20130731
          Length = 840

 Score =  113 bits (282), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 60/114 (52%), Positives = 71/114 (62%), Gaps = 25/114 (21%)

Query: 6   AEFSDKHIVRLPETPDEIPGGGMLHIVSLLMQDKLTEAGKPGGRVEI------------- 52
            +FSDK IVRL ETPDEIP GG  H VSLL+ DKL + GKPG RVE+             
Sbjct: 307 CKFSDKQIVRLQETPDEIPEGGTPHTVSLLLHDKLVDTGKPGDRVEVTGIYRAMSVRVGP 366

Query: 53  -----------YIDCLHIKKSVKSRMLIEDTIEVENTEGKKA-EVTFDEEKVMQ 94
                      YIDCLHIKK+ KSRML+ED +EV+N +G+   EV FDEEKV +
Sbjct: 367 TQRTVKSLFKTYIDCLHIKKTSKSRMLVEDAMEVDNGQGRNPEEVLFDEEKVAK 420