Miyakogusa Predicted Gene

Lj1g3v3891960.2
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3891960.2 Non Characterized Hit- tr|K3ZJM6|K3ZJM6_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si026779,58.82,0.00000000004,seg,NULL,CUFF.31357.2
         (368 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g026520.1 | transmembrane protein, putative | HC | chr7:88...   612   e-175

>Medtr7g026520.1 | transmembrane protein, putative | HC |
           chr7:8800563-8794554 | 20130731
          Length = 554

 Score =  612 bits (1578), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 288/370 (77%), Positives = 322/370 (87%), Gaps = 2/370 (0%)

Query: 1   MKEIKHLWRQNGCESKYGRQLVMRTDDFEKPAQTNVLCSNWKEWEQPIIWFQGTTDHVAA 60
           +KEIKHLWR NGCES YGR+LVMRTDDFEKPAQ+NVLCSNWKEWEQPIIWFQGT D VA+
Sbjct: 185 LKEIKHLWRLNGCESIYGRKLVMRTDDFEKPAQSNVLCSNWKEWEQPIIWFQGTNDAVAS 244

Query: 61  QFFLKNIHSQMRIAAFDLFGDPKVLGSRPNVFGELMRVLISPTKDVEAAVNWVIGGEENP 120
           QFFLKNIH QM++AAFDLFGDP+VLGS+PNVFGELMRVLISP+KDVEAAVNWVIGG++NP
Sbjct: 245 QFFLKNIHPQMKVAAFDLFGDPQVLGSQPNVFGELMRVLISPSKDVEAAVNWVIGGDKNP 304

Query: 121 DITLHMRMLMNRSIRAVQAALLCIKKAIQSQHLMSRPKVVVVSDTPSLVKSIIPNISEFA 180
           DI+LHMRM  NRSIRA+QAAL CI+KAI+SQHLMSRPKVVVVSDTPSL K+I PNISEFA
Sbjct: 305 DISLHMRMQTNRSIRALQAALRCIRKAIESQHLMSRPKVVVVSDTPSLAKNISPNISEFA 364

Query: 181 EVLHFDYEKFKGSIFDGLPKSDFRVKDWGPAPRWVAFVDFFLASRARYAVISGAHRRVGT 240
           EV+HFDYEKFKG ++DGLPK DFRV+DWGPAPRWVAFVDFFLASRARYAV+SGAHRRVGT
Sbjct: 365 EVVHFDYEKFKGKMYDGLPKFDFRVRDWGPAPRWVAFVDFFLASRARYAVVSGAHRRVGT 424

Query: 241 TYXXXXXXXXXXRNLGD--NXXXXXXXXXXXXXXXNLLTDGLKNQVGWGHVWNRYAGPLS 298
           TY           NLGD  N               NLL+DGLKNQ+GWGHVWNRYAGPLS
Sbjct: 425 TYAQLIAALAAANNLGDDTNTTSGPSFSFLSSFQGNLLSDGLKNQIGWGHVWNRYAGPLS 484

Query: 299 CPNQSNQCAFTPLLPPGWWDGIWQSPIPRDVNRLASYGVQLSSIGTIDFDSLQNYCNSRR 358
           C NQ++QCAFTPLLPPGWWDG+WQSPIPRD+ RL+ YGVQLS  G +D DSLQNYCNSR+
Sbjct: 485 CRNQNSQCAFTPLLPPGWWDGLWQSPIPRDIKRLSFYGVQLSGFGNVDTDSLQNYCNSRK 544

Query: 359 SVLKTIPFNL 368
           +V+KT+ +NL
Sbjct: 545 TVVKTVTYNL 554