Miyakogusa Predicted Gene

Lj1g3v3891930.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3891930.3 tr|G7KPD6|G7KPD6_MEDTR Rop guanine nucleotide
exchange factor OS=Medicago truncatula
GN=MTR_6g087700,70.21,0.0000005,PRONE,Plant specific Rop nucleotide
exchanger, PRONE,CUFF.31366.3
         (58 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g087700.1 | RHO guanyl-nucleotide exchange factor | HC | c...    59   1e-09
Medtr2g101830.1 | RHO guanyl-nucleotide exchange factor | HC | c...    53   6e-08
Medtr4g019770.1 | RHO guanyl-nucleotide exchange factor | HC | c...    52   2e-07
Medtr7g065220.1 | RHO guanyl-nucleotide exchange factor | HC | c...    51   2e-07
Medtr5g081410.1 | RHO guanyl-nucleotide exchange factor | HC | c...    50   4e-07
Medtr3g069590.2 | RHO guanyl-nucleotide exchange factor | HC | c...    50   6e-07
Medtr3g069590.1 | RHO guanyl-nucleotide exchange factor | HC | c...    50   6e-07
Medtr4g075640.1 | Rop guanine nucleotide exchange factor | HC | ...    49   8e-07

>Medtr6g087700.1 | RHO guanyl-nucleotide exchange factor | HC |
           chr6:32999908-32996320 | 20130731
          Length = 549

 Score = 58.5 bits (140), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/47 (70%), Positives = 34/47 (72%), Gaps = 4/47 (8%)

Query: 1   MTFRFAKLLLGEDISGAGNDASSTLALSYAITNLATQHFGIPSFEQS 47
           M  RFAKLLLGED+SGAGN  SS LALS AITNLA   FG    EQS
Sbjct: 100 MKERFAKLLLGEDMSGAGNGVSSALALSNAITNLAASVFG----EQS 142


>Medtr2g101830.1 | RHO guanyl-nucleotide exchange factor | HC |
           chr2:43813630-43810264 | 20130731
          Length = 533

 Score = 52.8 bits (125), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 27/40 (67%), Positives = 28/40 (70%)

Query: 1   MTFRFAKLLLGEDISGAGNDASSTLALSYAITNLATQHFG 40
           M  RFAKLLLGED+SG G   SS LALS A TNLA   FG
Sbjct: 90  MKERFAKLLLGEDMSGGGKGVSSALALSNAFTNLAASIFG 129


>Medtr4g019770.1 | RHO guanyl-nucleotide exchange factor | HC |
           chr4:6266234-6262535 | 20130731
          Length = 542

 Score = 51.6 bits (122), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/40 (62%), Positives = 29/40 (72%)

Query: 1   MTFRFAKLLLGEDISGAGNDASSTLALSYAITNLATQHFG 40
           M  RFAKLLLGED+SG+GN   + LA+S AITNL    FG
Sbjct: 100 MKERFAKLLLGEDMSGSGNGVPTALAISNAITNLCATVFG 139


>Medtr7g065220.1 | RHO guanyl-nucleotide exchange factor | HC |
           chr7:23784213-23780879 | 20130731
          Length = 656

 Score = 50.8 bits (120), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/40 (62%), Positives = 28/40 (70%)

Query: 1   MTFRFAKLLLGEDISGAGNDASSTLALSYAITNLATQHFG 40
           M  RFAKLLLGED+SG GN   + LA+S AITNL    FG
Sbjct: 188 MKERFAKLLLGEDMSGCGNGVPTALAISNAITNLCATLFG 227


>Medtr5g081410.1 | RHO guanyl-nucleotide exchange factor | HC |
           chr5:34865519-34861053 | 20130731
          Length = 576

 Score = 50.4 bits (119), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/40 (62%), Positives = 29/40 (72%)

Query: 1   MTFRFAKLLLGEDISGAGNDASSTLALSYAITNLATQHFG 40
           M  RFAKLLLGED+SG+G   S+ LA+S AITNL    FG
Sbjct: 86  MKERFAKLLLGEDMSGSGKGVSTALAISNAITNLCGTVFG 125


>Medtr3g069590.2 | RHO guanyl-nucleotide exchange factor | HC |
           chr3:31131780-31127698 | 20130731
          Length = 435

 Score = 49.7 bits (117), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 24/40 (60%), Positives = 28/40 (70%)

Query: 1   MTFRFAKLLLGEDISGAGNDASSTLALSYAITNLATQHFG 40
           M  RFAKLLLGED+SG+G    + LA+S AITNL    FG
Sbjct: 104 MKERFAKLLLGEDMSGSGKGVCTALAISNAITNLCATAFG 143


>Medtr3g069590.1 | RHO guanyl-nucleotide exchange factor | HC |
           chr3:31131780-31127698 | 20130731
          Length = 595

 Score = 49.7 bits (117), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 24/40 (60%), Positives = 28/40 (70%)

Query: 1   MTFRFAKLLLGEDISGAGNDASSTLALSYAITNLATQHFG 40
           M  RFAKLLLGED+SG+G    + LA+S AITNL    FG
Sbjct: 104 MKERFAKLLLGEDMSGSGKGVCTALAISNAITNLCATAFG 143


>Medtr4g075640.1 | Rop guanine nucleotide exchange factor | HC |
           chr4:28908900-28905362 | 20130731
          Length = 558

 Score = 49.3 bits (116), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 24/40 (60%), Positives = 28/40 (70%)

Query: 1   MTFRFAKLLLGEDISGAGNDASSTLALSYAITNLATQHFG 40
           M  RFAKLLLGED+SG G    + LA+S AITNL+   FG
Sbjct: 91  MKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSATVFG 130