Miyakogusa Predicted Gene

Lj1g3v3891890.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3891890.1 tr|G7L125|G7L125_MEDTR Regulation of nuclear
pre-mRNA domain-containing protein 1B OS=Medicago
trunc,76.12,0,ENTH/VHS domain,ENTH/VHS; CID,RNA polymerase II, large
subunit, CTD; no description,RNA polymerase
I,NODE_57586_length_2212_cov_73.393761.path2.1
         (513 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g026740.1 | regulation of nuclear pre-mRNA domain protein ...   691   0.0  
Medtr3g087840.1 | ENTH/VHS family protein | HC | chr3:39807660-3...   233   4e-61
Medtr6g027180.1 | RNA polymerase II-binding domain protein | HC ...   223   4e-58
Medtr6g027180.2 | RNA polymerase II-binding domain protein | HC ...   223   4e-58
Medtr7g087450.1 | RNA polymerase II-binding domain protein | HC ...   206   4e-53
Medtr7g087450.2 | RNA polymerase II-binding domain protein | HC ...    74   5e-13

>Medtr7g026740.1 | regulation of nuclear pre-mRNA domain protein |
           HC | chr7:8884185-8894171 | 20130731
          Length = 527

 Score =  691 bits (1782), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/536 (67%), Positives = 398/536 (74%), Gaps = 32/536 (5%)

Query: 1   MGSTFNAQILVDKLTKLNGSQASIETLSHWCIFHMNKAKQVVETWARQFHSSPREKRLAF 60
           MGSTFN QILV+KL KLN SQ SIETLSHWCIFHMNKAKQVVETWA+QFHSSPREK+LAF
Sbjct: 1   MGSTFNPQILVEKLAKLNSSQTSIETLSHWCIFHMNKAKQVVETWAKQFHSSPREKKLAF 60

Query: 61  LYLANDILQNSRRKGSEFVGEFWKVLPGALRDVIENGDEFAKNAALRLIGIWEERKVFGS 120
           L+LANDILQNSRRKGSEFVGEFWKVLP +LRDVI+NGD+ A+N A RLIGIW+ERKVFGS
Sbjct: 61  LFLANDILQNSRRKGSEFVGEFWKVLPDSLRDVIQNGDDNARNQARRLIGIWDERKVFGS 120

Query: 121 RGQILKEGIVGKNVENNSRD----------AKPMNMKLRPSAGDALEKIVSGYRVIYGGQ 170
           RGQILKE  VG++ ENN+RD           KPMN+KLRPSAG+AL++IVSGY+ IYGGQ
Sbjct: 121 RGQILKEEFVGRHAENNNRDVKPMNAKPTNVKPMNVKLRPSAGNALDRIVSGYQYIYGGQ 180

Query: 171 TDEDAVLSKCRNAISFLEKADKEIGHDSDSGK---------LQGHNATLKDCIERLTSIE 221
           TDEDAVLSKC+NAIS LEK DKEI HDS+SGK         LQGHN  LKDCI++LT+IE
Sbjct: 181 TDEDAVLSKCQNAISSLEKVDKEIDHDSNSGKFHGPAVVNELQGHNGILKDCIDQLTAIE 240

Query: 222 SSRASLVSHLREALQDQEFKLGQIRCQIQAARVQSEQAGG---QLLNGNNVQPITEQSSK 278
           SSRASLVSHLREALQDQEFKLGQ+R QIQAARVQ E +     QLLNGNN+Q + EQSSK
Sbjct: 241 SSRASLVSHLREALQDQEFKLGQVRSQIQAARVQWEHSNNTCQQLLNGNNIQSLVEQSSK 300

Query: 279 EIQTSMAPASFVSAGDREQSAPLMYAPQVSFAQNSGPNEEDPRXXXXXXXXXXXXXXXXX 338
           EIQTSM PASF+S G  EQSAPLMY+PQV F+QNSG +EEDPR                 
Sbjct: 301 EIQTSMTPASFISGG--EQSAPLMYSPQVMFSQNSGHSEEDPRKSAAAAVAAKLTASTSS 358

Query: 339 XQMLSYVLSSLASEGVIGNPIRDSSADYQPEKRAKLENDXXXXXXXXXXXXXXXXXXXXX 398
            QMLSYVLSSLASEGVIGN +  SSADY  EKR KLEND                     
Sbjct: 359 AQMLSYVLSSLASEGVIGNQMTGSSADYHAEKRTKLENDQSYVPSQNPQQPLPPFS---- 414

Query: 399 XXILHNAASTTNQQSTPNEXXXXXXXXXXXXXXXXXMA-QYPVPQYMQTSGSVNNMTYSY 457
              L     T+NQQSTPNE                    QYPVPQ+MQ  GSVNNM YSY
Sbjct: 415 ---LSEPTQTSNQQSTPNEPPPPPSSSPPPLPPLPPTPQQYPVPQFMQNVGSVNNMAYSY 471

Query: 458 SVIQQPSMAAFPAVGPSLNNASSFAPPMNAYQGFQGPDGNYYNHPSSMPMTPISRQ 513
            V+QQPSMA +PAVG S+NN S + P MNAYQGFQGPDGNYYN PSSMPM PISRQ
Sbjct: 472 GVMQQPSMATYPAVGVSMNNISPYTPQMNAYQGFQGPDGNYYNQPSSMPMVPISRQ 527


>Medtr3g087840.1 | ENTH/VHS family protein | HC |
           chr3:39807660-39811898 | 20130731
          Length = 533

 Score =  233 bits (593), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 124/288 (43%), Positives = 168/288 (58%), Gaps = 34/288 (11%)

Query: 5   FNAQILVDKLTKLNGSQASIETLSHWCIFHMNKAKQVVETWARQFHSSPREKRLAFLYLA 64
           F   IL DKL KLN +Q  IETLSHWCIFH + A+QVV TW  QF  S    R+  L+LA
Sbjct: 7   FKEAILADKLAKLNSTQQCIETLSHWCIFHRSNAEQVVATWKNQFDKSDMIHRIPLLWLA 66

Query: 65  NDILQNSRRKGSEFVGEFWKVLPGALRDVIENGDEFAKNAALRLIGIWEERKVFGSRGQI 124
           NDILQNS+R G EFV EFWKVLP AL+DVI   D+  K A  RL  +WE+R VFGSR   
Sbjct: 67  NDILQNSKRNGKEFVIEFWKVLPAALKDVIAKDDDRGKRAVSRLFEVWEQRNVFGSRVPN 126

Query: 125 LKEGIVGK----------------------NVENNSRDAKPMNMKLRPSAGDALEKIVSG 162
           LK+ ++G+                      +V+   RD++ +  KL  S G   EKIVS 
Sbjct: 127 LKDAMLGEGSPPPLEFGKKRPRSARIMKRDSVKILKRDSRSIKSKL--SIGGTTEKIVSA 184

Query: 163 YRVIYGGQTDEDAVLSKCRNAISFLEKADKEIGHDSDSGK----------LQGHNATLKD 212
           + ++ G Q +EDA +SKC++A+  + K +K++     + K          L+   + LK 
Sbjct: 185 FHLVLGEQANEDAEMSKCKSAVQRVRKIEKDVDIACATAKDPTRKTLRKELEEQQSLLKH 244

Query: 213 CIERLTSIESSRASLVSHLREALQDQEFKLGQIRCQIQAARVQSEQAG 260
           CIE+L  +E +R +LVS L+EAL +QE  L  +R Q+Q A+ Q E+A 
Sbjct: 245 CIEKLKLVEENRVALVSQLKEALHEQESDLENVRTQMQVAQAQIEEAS 292


>Medtr6g027180.1 | RNA polymerase II-binding domain protein | HC |
           chr6:9201234-9212785 | 20130731
          Length = 542

 Score =  223 bits (568), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 150/397 (37%), Positives = 207/397 (52%), Gaps = 42/397 (10%)

Query: 5   FNAQILVDKLTKLNGSQASIETLSHWCIFHMNKAKQVVETWARQFHSSPREKRLAFLYLA 64
           ++ Q+L +KL KLN SQ SIE++S  C+ H  +AK +VETW + F SS +E+R+ FL LA
Sbjct: 6   YDGQVLAEKLRKLNNSQQSIESVSRLCVSHRKRAKDIVETWNKSFGSSQKEQRVPFLNLA 65

Query: 65  NDILQNSRRKGSEFVGEFWKVLPGALRDVIENGDEFAKNAALRLIGIWEERKVFGSRGQI 124
           NDILQNSRRKGSEFV EFWKVLP AL+ V  + DE  K + +RLI IWEERKVFGSR Q 
Sbjct: 66  NDILQNSRRKGSEFVNEFWKVLPSALKRVYAS-DEPGKKSVIRLIDIWEERKVFGSRSQG 124

Query: 125 LKEGIVGKNVENNS-------RDAKPMNMKLRPSAGDALEKIVSGYRVIYGGQTDEDAVL 177
           LKE I GK+   NS       RDA  + +KL  + G   EKI++    +     +E+A L
Sbjct: 125 LKEEITGKSNGKNSNPIKIAKRDAHSLRLKL--AIGCLPEKIITALHFVNEEHPNEEASL 182

Query: 178 SKCRNAISFLEKADKEIGHDSDSGK---------LQGHNATLKDCIERLTSIESSRASLV 228
           +KC  A+S L K  +++ +    G          LQ     L   I +L + E+ RA+L+
Sbjct: 183 NKCSAALSQLGKLVEDVENTLSQGNQPGSTLVNDLQQQEKELTQNIVQLENTEAIRATLL 242

Query: 229 SHLREALQDQEFKLGQIRCQIQAARVQSEQAGG---QLLNGNNVQPITEQSSKEIQTSMA 285
           S L+EALQ+QE +   +  ++QAAR   EQ      +         + EQ++  +Q +  
Sbjct: 243 SQLKEALQEQESRQELVHSRLQAARDHIEQVASIRKRFSQAPETTRVPEQTTPSVQLNST 302

Query: 286 PASFVSAGDREQSAPLMYAPQVSFAQNSGPNEEDPRXXXXXXXXXXXXXXXXXXQMLSYV 345
           P             P    P +SFA       ED +                   ML+ +
Sbjct: 303 PP-----------PPSFTQPTMSFAPLQ--TTEDDKKAAAAAVAARLTASTSSALMLTSI 349

Query: 346 LSSLASEGVIGNPIRDSSAD-------YQPEKRAKLE 375
           LSSL +E         +SA+       + PEKR KLE
Sbjct: 350 LSSLVAEEAASKNGSLNSAEFNSAPPGFHPEKRPKLE 386


>Medtr6g027180.2 | RNA polymerase II-binding domain protein | HC |
           chr6:9202019-9212786 | 20130731
          Length = 542

 Score =  223 bits (568), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 150/397 (37%), Positives = 207/397 (52%), Gaps = 42/397 (10%)

Query: 5   FNAQILVDKLTKLNGSQASIETLSHWCIFHMNKAKQVVETWARQFHSSPREKRLAFLYLA 64
           ++ Q+L +KL KLN SQ SIE++S  C+ H  +AK +VETW + F SS +E+R+ FL LA
Sbjct: 6   YDGQVLAEKLRKLNNSQQSIESVSRLCVSHRKRAKDIVETWNKSFGSSQKEQRVPFLNLA 65

Query: 65  NDILQNSRRKGSEFVGEFWKVLPGALRDVIENGDEFAKNAALRLIGIWEERKVFGSRGQI 124
           NDILQNSRRKGSEFV EFWKVLP AL+ V  + DE  K + +RLI IWEERKVFGSR Q 
Sbjct: 66  NDILQNSRRKGSEFVNEFWKVLPSALKRVYAS-DEPGKKSVIRLIDIWEERKVFGSRSQG 124

Query: 125 LKEGIVGKNVENNS-------RDAKPMNMKLRPSAGDALEKIVSGYRVIYGGQTDEDAVL 177
           LKE I GK+   NS       RDA  + +KL  + G   EKI++    +     +E+A L
Sbjct: 125 LKEEITGKSNGKNSNPIKIAKRDAHSLRLKL--AIGCLPEKIITALHFVNEEHPNEEASL 182

Query: 178 SKCRNAISFLEKADKEIGHDSDSGK---------LQGHNATLKDCIERLTSIESSRASLV 228
           +KC  A+S L K  +++ +    G          LQ     L   I +L + E+ RA+L+
Sbjct: 183 NKCSAALSQLGKLVEDVENTLSQGNQPGSTLVNDLQQQEKELTQNIVQLENTEAIRATLL 242

Query: 229 SHLREALQDQEFKLGQIRCQIQAARVQSEQAGG---QLLNGNNVQPITEQSSKEIQTSMA 285
           S L+EALQ+QE +   +  ++QAAR   EQ      +         + EQ++  +Q +  
Sbjct: 243 SQLKEALQEQESRQELVHSRLQAARDHIEQVASIRKRFSQAPETTRVPEQTTPSVQLNST 302

Query: 286 PASFVSAGDREQSAPLMYAPQVSFAQNSGPNEEDPRXXXXXXXXXXXXXXXXXXQMLSYV 345
           P             P    P +SFA       ED +                   ML+ +
Sbjct: 303 PP-----------PPSFTQPTMSFAPLQ--TTEDDKKAAAAAVAARLTASTSSALMLTSI 349

Query: 346 LSSLASEGVIGNPIRDSSAD-------YQPEKRAKLE 375
           LSSL +E         +SA+       + PEKR KLE
Sbjct: 350 LSSLVAEEAASKNGSLNSAEFNSAPPGFHPEKRPKLE 386


>Medtr7g087450.1 | RNA polymerase II-binding domain protein | HC |
           chr7:34034205-34026117 | 20130731
          Length = 489

 Score =  206 bits (525), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 134/372 (36%), Positives = 190/372 (51%), Gaps = 41/372 (11%)

Query: 27  LSHWCIFHMNKAKQVVETWARQFHSSPREKRLAFLYLANDILQNSRRKGSEFVGEFWKVL 86
           LS WCI H  +AK +VE W + F++S +E+R++FL LANDILQNSRRKGSEFV EFWKVL
Sbjct: 10  LSRWCIPHQKRAKDIVEIWDKLFNASQKEQRVSFLNLANDILQNSRRKGSEFVNEFWKVL 69

Query: 87  PGALRDVIENGDEFAKNAALRLIGIWEERKVFGSRGQILKEGIVGKN----VENNSRDAK 142
           P ALR V E+GD   + A  RLI IWEERKVFGSR Q LK+ ++ KN      NN + + 
Sbjct: 70  PAALRHVYESGDVQGRKAVNRLIDIWEERKVFGSRSQGLKDEVMSKNPLPFSANNGKGSD 129

Query: 143 PMNM--------KLRPSAGDALEKIVSGYRVIYGGQTDEDAVLSKC----RNAISFLEKA 190
           P+ +        +++ + G   EKI++ +  +     +E+A L+KC     + +  LE  
Sbjct: 130 PIKIVKRDAHSVRIKLAVGSLPEKILTAFHSVLDEHLNEEAALNKCNAGVHDVVKLLEDV 189

Query: 191 DKEIGHDSDSG-----KLQGHNATLKDCIERLTSIESSRASLVSHLREALQDQEFKLGQI 245
           +      +  G      LQ     LK  +E+L   E++RASL+S L++ALQ+ E K   +
Sbjct: 190 ENTFAQGNQLGSTLVNNLQEREKELKHYMEQLEHAEAARASLLSQLKDALQEHESKQEHV 249

Query: 246 RCQIQAARVQSEQAGG--QLLNGNNVQPITEQSSKEIQTSMAPASFVSAGDREQSAPLMY 303
           R Q+   R Q E+  G  + LN       TE +   +Q            +   S P   
Sbjct: 250 RAQLLIVRGQIEKTAGIRKWLNQT-----TEATHPSVQL-----------NGTTSQPTCA 293

Query: 304 APQVSFAQNSGPNEEDPRXXXXXXXXXXXXXXXXXXQMLSYVLSSLASEGVIGNPIRDSS 363
            P +SF+      E++                    QML+ VLSSLA+E           
Sbjct: 294 QPSMSFSPFQTSEEDN--KKAAAAVAAKLAGSSSSAQMLASVLSSLAAEEAASKGFSSGL 351

Query: 364 ADYQPEKRAKLE 375
             + PEKR K+E
Sbjct: 352 PIFNPEKRQKIE 363


>Medtr7g087450.2 | RNA polymerase II-binding domain protein | HC |
           chr7:34032142-34026117 | 20130731
          Length = 377

 Score = 73.6 bits (179), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 72/250 (28%), Positives = 107/250 (42%), Gaps = 35/250 (14%)

Query: 139 RDAKPMNMKLRPSAGDALEKIVSGYRVIYGGQTDEDAVLSKC----RNAISFLEKADKEI 194
           RDA  + +KL  + G   EKI++ +  +     +E+A L+KC     + +  LE  +   
Sbjct: 24  RDAHSVRIKL--AVGSLPEKILTAFHSVLDEHLNEEAALNKCNAGVHDVVKLLEDVENTF 81

Query: 195 GHDSDSGK-----LQGHNATLKDCIERLTSIESSRASLVSHLREALQDQEFKLGQIRCQI 249
              +  G      LQ     LK  +E+L   E++RASL+S L++ALQ+ E K   +R Q+
Sbjct: 82  AQGNQLGSTLVNNLQEREKELKHYMEQLEHAEAARASLLSQLKDALQEHESKQEHVRAQL 141

Query: 250 QAARVQSEQAGG--QLLNGNNVQPITEQSSKEIQTSMAPASFVSAGDREQSAPLMYAPQV 307
              R Q E+  G  + LN       TE +   +Q            +   S P    P +
Sbjct: 142 LIVRGQIEKTAGIRKWLNQT-----TEATHPSVQL-----------NGTTSQPTCAQPSM 185

Query: 308 SFA--QNSGPNEEDPRXXXXXXXXXXXXXXXXXXQMLSYVLSSLASEGVIGNPIRDSSAD 365
           SF+  Q S   EED                    QML+ VLSSLA+E             
Sbjct: 186 SFSPFQTS---EED-NKKAAAAVAAKLAGSSSSAQMLASVLSSLAAEEAASKGFSSGLPI 241

Query: 366 YQPEKRAKLE 375
           + PEKR K+E
Sbjct: 242 FNPEKRQKIE 251