Miyakogusa Predicted Gene

Lj1g3v3834310.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3834310.1 tr|I3SFH0|I3SFH0_MEDTR DNA replication complex
GINS protein PSF2 OS=Medicago truncatula PE=2 SV=1,81.99,0,DNA
REPLICATION COMPLEX GINS PROTEIN PSF2,GINS complex, subunit Psf2;
Sld5,GINS complex,CUFF.31241.1
         (211 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g029455.1 | DNA replication complex GINS protein | HC | ch...   343   8e-95
Medtr7g029455.2 | DNA replication complex GINS protein | HC | ch...   337   6e-93

>Medtr7g029455.1 | DNA replication complex GINS protein | HC |
           chr7:10546916-10551710 | 20130731
          Length = 210

 Score =  343 bits (879), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 165/211 (78%), Positives = 183/211 (86%), Gaps = 1/211 (0%)

Query: 1   MAGQSDNXXXXXXXXXXXXIAEDETVEIVPKFKMDPLCFISGDFGPFSPNVPTQVPIWLA 60
           MAGQS++            IAEDE V+IVP  KMDPLC ISGDFGPF+P + TQVP+WLA
Sbjct: 1   MAGQSNHELSLFSAEELEFIAEDEIVDIVPNLKMDPLCLISGDFGPFTPQIVTQVPLWLA 60

Query: 61  IALKKRSKCVIRPPQWMTVEKLTQILEAERDSQEMSEQLPFHYIEISRLLFNHARDNIAD 120
           IAL++R KC I PPQWMTV+KLT++LEAER+SQEMSE LPFHY+EISRLLF+HARDNI D
Sbjct: 61  IALRRRGKCSIVPPQWMTVDKLTEVLEAERNSQEMSEHLPFHYVEISRLLFDHARDNIPD 120

Query: 121 DYMVRSLIEDIRNVRFHKIETDLEAFNGRTIAVKIKNLSAMEVNIVRPFIGRALQAFYKH 180
            YMVRSLIEDIR+VRFHK+ETDLEAF+GRT AVKIKNLSAMEVNIVRPFIGRALQAFYKH
Sbjct: 121 AYMVRSLIEDIRDVRFHKVETDLEAFDGRTFAVKIKNLSAMEVNIVRPFIGRALQAFYKH 180

Query: 181 DSPDLIPDPERVSDRRPQAANNNAPRRQLRR 211
           DS DLIPDPERVSDRRPQ A +NAPRRQLRR
Sbjct: 181 DSSDLIPDPERVSDRRPQVA-HNAPRRQLRR 210


>Medtr7g029455.2 | DNA replication complex GINS protein | HC |
           chr7:10546916-10551710 | 20130731
          Length = 216

 Score =  337 bits (863), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 165/217 (76%), Positives = 183/217 (84%), Gaps = 7/217 (3%)

Query: 1   MAGQSDNXXXXXXXXXXXXIAEDETVEIVPKFKMDPLCFISGDFGPFSPNVPTQVPIWLA 60
           MAGQS++            IAEDE V+IVP  KMDPLC ISGDFGPF+P + TQVP+WLA
Sbjct: 1   MAGQSNHELSLFSAEELEFIAEDEIVDIVPNLKMDPLCLISGDFGPFTPQIVTQVPLWLA 60

Query: 61  IALKKRSKCVIRPPQWMTVEKLTQILEAERDSQEMSEQLPFHYIEISRLLFNHARDNIAD 120
           IAL++R KC I PPQWMTV+KLT++LEAER+SQEMSE LPFHY+EISRLLF+HARDNI D
Sbjct: 61  IALRRRGKCSIVPPQWMTVDKLTEVLEAERNSQEMSEHLPFHYVEISRLLFDHARDNIPD 120

Query: 121 DYM------VRSLIEDIRNVRFHKIETDLEAFNGRTIAVKIKNLSAMEVNIVRPFIGRAL 174
            YM      VRSLIEDIR+VRFHK+ETDLEAF+GRT AVKIKNLSAMEVNIVRPFIGRAL
Sbjct: 121 AYMFISLVKVRSLIEDIRDVRFHKVETDLEAFDGRTFAVKIKNLSAMEVNIVRPFIGRAL 180

Query: 175 QAFYKHDSPDLIPDPERVSDRRPQAANNNAPRRQLRR 211
           QAFYKHDS DLIPDPERVSDRRPQ A +NAPRRQLRR
Sbjct: 181 QAFYKHDSSDLIPDPERVSDRRPQVA-HNAPRRQLRR 216