Miyakogusa Predicted Gene

Lj1g3v3833930.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3833930.1 Non Characterized Hit- tr|I1L673|I1L673_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.52547
PE,34.93,6e-18,"Winged helix" DNA-binding domain,NULL; seg,NULL;
Rad21_Rec8_N,Rad21/Rec8-like protein, N-terminal; ,CUFF.31211.1
         (943 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g031420.1 | sister chromatid cohesion 1 protein | HC | chr...   360   5e-99
Medtr7g080575.1 | sister chromatid cohesion 1 protein | HC | chr...    99   2e-20
Medtr3g005770.1 | sister chromatid cohesion 1 protein | HC | chr...    95   3e-19
Medtr3g026750.1 | Rad21/Rec8-like protein, amine-terminal protei...    63   2e-09

>Medtr7g031420.1 | sister chromatid cohesion 1 protein | HC |
           chr7:10945596-10952129 | 20130731
          Length = 773

 Score =  360 bits (923), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 226/477 (47%), Positives = 289/477 (60%), Gaps = 47/477 (9%)

Query: 471 ETSSSSCQLHQEITQIHEARNFQESIGRPQDNISSQNECVDHIAFSVAKESQKEVVGGS- 529
           E+  S CQ+  E   + E   FQE            NE   H   SV KE   E++  S 
Sbjct: 337 ESLRSLCQMDLENVGVDETLAFQE------------NENFLHNQSSVVKECTGELIEESI 384

Query: 530 ---TKEHGKEGKKCSQKNVSFEDGTPSSIPEQSKNLDVTPQSRFQGHSVGIPKPGTT--T 584
              T +   +G    QK VSFE G  S  P +S  LD TPQS+FQG S+G PKPG+T  T
Sbjct: 385 VDPTPQSKFQGNLEVQKKVSFEHGQSSVNPAESTILDPTPQSKFQGGSIGRPKPGSTSTT 444

Query: 585 SDFIPISKRAVRKPGHLSRKRKPVIDKMTVLSDKVLKRSLIDTSDLISNRRQFRPTLLSK 644
           S+F  I      +    SRKRK VIDK  VL  +VLKRS++D SDL+S RR    +LL K
Sbjct: 445 SEFKLIPTPTATESARFSRKRKFVIDKTMVLPTEVLKRSILDASDLVSVRRPLGLSLLDK 504

Query: 645 RRESRISSLPDGFNESFFPCFLQQLQSLFS-KKMKISDSLEIVEPPERLDVSKSQTVGSP 703
            R+ ++SSL D FNES F C   +L+SLFS KKMKI +SL+I E      VS+S+ V  P
Sbjct: 505 HRKYQLSSLLDRFNESLFTCHSAKLKSLFSSKKMKIPNSLKIKETLPESGVSESRAVRIP 564

Query: 704 EHIETSLRTPPQGLDPLVTNETPGALDVSGCQTFDNPEHIATAPQTPPPCQNIQVRSVEL 763
           + IE     PP+       +ET G LDVS  QT  + +H A AP+TPP C N++VR+V+ 
Sbjct: 565 DRIEI----PPR------FSETIGELDVSQSQTCGSSDHTAAAPETPPLCPNVKVRTVKQ 614

Query: 764 PRRTEIQYSDNLGPSSPHANTEKEQPSNPDANXXXXXXXXXXXXXXXXXKFNIESSDSYE 823
             RTE Q SD+  PSSPH   E+EQ     A+                 +FN E+S++YE
Sbjct: 615 HERTETQNSDDFVPSSPH---EREQSLERSADMVE--------------EFNEETSNTYE 657

Query: 824 SVEQEQCSTKDDELNLINEEINSCETENSKLEAGWSARTRKFASHLHRVFQDQGKQKEGD 883
            ++ EQC   D++LNL+NEE+N  +TENSK+ +GWS RTRK AS+L + FQD GKQKE  
Sbjct: 658 PMDNEQCFAVDEDLNLVNEEMNPSDTENSKM-SGWSERTRKVASYLSKSFQDAGKQKESG 716

Query: 884 DVNFSEVVGGRDRKESARMFYELLVLKTTNYVNVKQDKAYEDIAVSKLPKFDQTFGA 940
            VN S+V  GR RKESAR+FYE+LVLKTTNYV+V+Q++AY DIAV KLPK D+TFG 
Sbjct: 717 SVNLSQVSQGRTRKESARLFYEILVLKTTNYVDVQQNEAYGDIAVKKLPKLDKTFGV 773



 Score =  286 bits (731), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 197/486 (40%), Positives = 270/486 (55%), Gaps = 48/486 (9%)

Query: 20  KSLCSMRDPMWVAAYFYKKLKKAQVVDTDISSCIEKILQGEMDVTSYRVLAYLVLGVVRI 79
           K LCS ++P+WVAA+F+K+LKKAQ++D+DISS +++IL  EMD  SYR+L YL+ GVV+I
Sbjct: 6   KGLCSSKNPLWVAAFFFKQLKKAQILDSDISSAVDQILHHEMDAVSYRLLGYLLSGVVKI 65

Query: 80  YSKKVEYLLHDCNKVLSKFKEFVIATTKRNAHPETLHTFVTIPERFELDAFDLDILEDDG 139
           YSK+VEYLL DCNKVL    +FVI  TK N   E L     +PE F+LDA DL   ED  
Sbjct: 66  YSKQVEYLLDDCNKVLFGINKFVIK-TKSNTPVEKLRMSFIMPETFDLDAIDLGTPEDTS 124

Query: 140 GDHIAPKEKITLKEVLSKTERSVQFSHDKFEDFDXXXXXXXAHNSLVEH-FHRLMMGMDF 198
             H A  E+ITLK+VLS T   +QFS ++F+DF          + + E+     ++  DF
Sbjct: 125 RFHTALPEQITLKDVLSNTAGFMQFSQERFDDFGLGETSCSLDHFMAENVLETPLLNFDF 184

Query: 199 EDSPPDSSINLVAGEEQLENSL-------------FSRKEPMNFDSVLIVDETEKESINL 245
           E  P  SS NL+A ++ L++ +              SR+E ++    L     +KE++  
Sbjct: 185 EAFPSSSSTNLLASKDILQSRISGQNVDEFHEENRISREESIDKSMFL---GRQKEAVLP 241

Query: 246 SG---EDQQMN-EDQEVQEIVKCVDEIVQEIVKC------------VDGINKERSRISEE 289
           S    E +Q+  E     E ++ + ++ QE V              VD  ++E SRIS+E
Sbjct: 242 SASFNESRQIGIEHNMAMESLRSLCQMDQENVSVDETLAFRVSSQNVDEFHEE-SRISQE 300

Query: 290 ESTDISMFSEREKETVLSVEAFNESCEVDDDHIMAREMSSSSCQVHQEITQIHEARNFQE 349
           ESTDISMF   +KE VL   +FNES ++  +H MA E   S CQ+  E   + E   FQE
Sbjct: 301 ESTDISMFLGTQKEVVLPSASFNESRQIGIEHNMAMESLRSLCQMDLENVGVDETLAFQE 360

Query: 350 SIGRSQDDISSQDEFVDHVTSSVAKXXXXXXXXXXXXXXDRKGKLVFQKKVSFEDRTPTI 409
               +++ + +Q   V   T  + +                +G L  QKKVSFE    ++
Sbjct: 361 ----NENFLHNQSSVVKECTGELIEESIVDPTPQSKF----QGNLEVQKKVSFEHGQSSV 412

Query: 410 -PAQSKTLDVTPQSKFQGHSVGIPKPG--TTTSDFMPIPTPAVREPGLLSRKRKS--DKM 464
            PA+S  LD TPQSKFQG S+G PKPG  +TTS+F  IPTP   E    SRKRK   DK 
Sbjct: 413 NPAESTILDPTPQSKFQGGSIGRPKPGSTSTTSEFKLIPTPTATESARFSRKRKFVIDKT 472

Query: 465 TVLPNE 470
            VLP E
Sbjct: 473 MVLPTE 478


>Medtr7g080575.1 | sister chromatid cohesion 1 protein | HC |
           chr7:30681072-30668024 | 20130731
          Length = 1371

 Score = 99.0 bits (245), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/170 (36%), Positives = 102/170 (60%), Gaps = 14/170 (8%)

Query: 16  MLNTKSLCSMRDPM---WVAAYFYKKLKKAQVVDTDISSCIEKILQGEMDVTSYRVLAYL 72
           M  ++ + + + P+   W+AA+  +KL+K QV DTDI   ++ IL  E+ + + R+ ++L
Sbjct: 1   MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPEVPI-ALRLSSHL 59

Query: 73  VLGVVRIYSKKVEYLLHDCNKVLSKFKEFVIATTKRNAHPE---TLHTFVTIPERFELDA 129
           +LGVVRIYS+KV YL  DC++ L K K+    +   +  PE     +  +T+PE F+LD 
Sbjct: 60  LLGVVRIYSRKVNYLFDDCSEALLKVKQ-AFRSAAVDLPPEESTAPYNSITLPETFDLDD 118

Query: 130 FDL---DILEDDGGD-HIAPKEKITLKEVL-SKTERSVQFSHD-KFEDFD 173
           F+L   DI + +  D H++ KE+ITL++ L     ++ QF  D +F D D
Sbjct: 119 FELPDSDIFQGNYVDRHVSSKEQITLQDTLEGMVYKTSQFGLDERFGDGD 168



 Score = 67.0 bits (162), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 58/93 (62%), Gaps = 8/93 (8%)

Query: 849  TENSKLE-AGWSARTRKFASHLHRVFQDQ---GKQKEGDDVNFSEVVGGRDRKESARMFY 904
             E + LE +GWS+RTR  A +L  +F  +   G+Q    +++   ++ G+ RKE++RMF+
Sbjct: 1281 AEGTHLENSGWSSRTRAVAKYLQTLFDKEELHGRQ----NLHLDNILAGKTRKEASRMFF 1336

Query: 905  ELLVLKTTNYVNVKQDKAYEDIAVSKLPKFDQT 937
            E LVLKT +YV+V+Q K + +I +    K  +T
Sbjct: 1337 ETLVLKTRDYVHVEQAKPFANINLQPRKKLMKT 1369


>Medtr3g005770.1 | sister chromatid cohesion 1 protein | HC |
           chr3:375395-369758 | 20130731
          Length = 701

 Score = 95.1 bits (235), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 56/149 (37%), Positives = 89/149 (59%), Gaps = 14/149 (9%)

Query: 16  MLNTKSLCSMRDPM---WVAAYFYKKLKKAQVVDTDISSCIEKILQGEMDVTSYRVLAYL 72
           M  +++  + + P+   W+AA+   +LKK+Q   TDI S ++ I+   + + + R+ A+L
Sbjct: 1   MFYSQTFLARKGPLSTVWIAAHLQHRLKKSQYASTDIPSTVQHIMDPGVPI-ALRMSAHL 59

Query: 73  VLGVVRIYSKKVEYLLHDCNKVLSKFKEFVIATTKRNAHPE-----TLHTFVTIPERFEL 127
           +LGVVRIYSKKV+YLL+DCN V +   + V A+   N  PE      +HT +T+P  F+L
Sbjct: 60  LLGVVRIYSKKVDYLLNDCNLVRTVLYK-VFASVSNNTLPEDARQAPVHT-ITMPATFDL 117

Query: 128 DAFDLDILEDDGG---DHIAPKEKITLKE 153
           DA +L    D  G    HI  +++ITL +
Sbjct: 118 DALNLGYEIDFNGYEDAHIRSQDEITLAD 146



 Score = 56.2 bits (134), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 63/126 (50%), Gaps = 4/126 (3%)

Query: 815 NIESSDSYESVEQEQCSTKDDELNLINEE---INSCETENSKLEAGWSARTRKFASHLHR 871
           NI  S  +    Q   S   D+L  + E+     +     S+     S RTR  A +L  
Sbjct: 573 NILQSHDFSDTNQFINSAGKDDLWFLEEDSTPATASSQSTSRSIDTLSGRTRGLAQYLKD 632

Query: 872 VFQ-DQGKQKEGDDVNFSEVVGGRDRKESARMFYELLVLKTTNYVNVKQDKAYEDIAVSK 930
                   ++  +D + ++++ G+ RK +ARMF+E+LVLKT + ++V+Q++ Y DI+   
Sbjct: 633 YSPCTTIPEQPAEDFSLNKILDGKTRKIAARMFFEVLVLKTHDLIDVQQEEPYGDISFKL 692

Query: 931 LPKFDQ 936
            P  D+
Sbjct: 693 TPALDK 698


>Medtr3g026750.1 | Rad21/Rec8-like protein, amine-terminal protein |
           LC | chr3:8233666-8232118 | 20130731
          Length = 195

 Score = 62.8 bits (151), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/103 (38%), Positives = 58/103 (56%), Gaps = 7/103 (6%)

Query: 37  KKLKKAQVVDTDISSCIEKILQGEMDVTSYRVLAYLVLGVVRIYSKKVEYLLHDCNKV-- 94
           +K+KK++    DI S +  IL+  + V S R+ A L+ GVVRIYSKKV+ +L DCN +  
Sbjct: 5   EKIKKSKYHSVDIKSTVNHILKVSVPV-SLRLSAILLFGVVRIYSKKVDNVLSDCNNIQK 63

Query: 95  -LSKFKEFVIATTKRNAHPET---LHTFVTIPERFELDAFDLD 133
            L K    +I      A  ++       +T+PE F+LD  DLD
Sbjct: 64  RLLKVYPVIILPKNTMAMGDSKVAARNAITLPENFQLDELDLD 106