Miyakogusa Predicted Gene

Lj1g3v3789400.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3789400.1 Non Characterized Hit- tr|K3ZNZ7|K3ZNZ7_SETIT
Uncharacterized protein (Fragment) OS=Setaria italica
,54.65,2e-19,seg,NULL,CUFF.31181.1
         (123 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g030060.1 | hypothetical protein | HC | chr1:10474963-1047...   155   1e-38
Medtr3g088030.1 | hypothetical protein | HC | chr3:39908391-3990...   142   5e-35
Medtr8g094790.1 | hypothetical protein | HC | chr8:39595746-3959...    65   1e-11

>Medtr1g030060.1 | hypothetical protein | HC |
           chr1:10474963-10476367 | 20130731
          Length = 138

 Score =  155 bits (391), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 72/96 (75%), Positives = 78/96 (81%)

Query: 28  RYSCGNCGYELXXXXXXXXXXXXXXKYGKSIRRGIISFFNIDDSRFTRVDELQCVPHFSK 87
           R SCG CGYEL              KYGKSI+RGIISFFNIDDSRFT+VDE+QC PHF K
Sbjct: 5   RISCGACGYELNLSSSNRNTTSIGSKYGKSIKRGIISFFNIDDSRFTQVDEIQCAPHFHK 64

Query: 88  HSWGLFRRRTKLLCRKCGNHIGNAHNGYTSSFPLVS 123
           HSWGLFRRRTKLLCRKCGNHIGNA+NG+TSSFPLV+
Sbjct: 65  HSWGLFRRRTKLLCRKCGNHIGNAYNGFTSSFPLVT 100


>Medtr3g088030.1 | hypothetical protein | HC |
           chr3:39908391-39906229 | 20130731
          Length = 176

 Score =  142 bits (359), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 67/97 (69%), Positives = 76/97 (78%)

Query: 24  QRDVRYSCGNCGYELXXXXXXXXXXXXXXKYGKSIRRGIISFFNIDDSRFTRVDELQCVP 83
           QRDVRYSCG+CGY+L              KYGKSI+RGIISFFNIDDSRFT+VDE++C P
Sbjct: 33  QRDVRYSCGSCGYDLNLSSSNRNTSSIDSKYGKSIKRGIISFFNIDDSRFTQVDEIECAP 92

Query: 84  HFSKHSWGLFRRRTKLLCRKCGNHIGNAHNGYTSSFP 120
           HFSK+ WGLFRR+TKLLCRKC NHIG A+NG  SS P
Sbjct: 93  HFSKNLWGLFRRKTKLLCRKCCNHIGYAYNGNNSSSP 129


>Medtr8g094790.1 | hypothetical protein | HC |
           chr8:39595746-39596546 | 20130731
          Length = 150

 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/107 (42%), Positives = 59/107 (55%), Gaps = 21/107 (19%)

Query: 25  RDVRYSCGNCGYELXXXXX--XXXXXXXXXKYGKSI---RRGIISFFNIDDSRFTRVDEL 79
           RDV YSCG+CGYEL                 YGKSI   +R +ISFF++D++RFT++ + 
Sbjct: 24  RDVNYSCGSCGYELNLNSSNRNTTLSLTDSNYGKSIKKRKRCLISFFSVDETRFTQIQQF 83

Query: 80  QCVPHFSKHSWGL----FRR--RTKLLCRKCGNHIGNAHNGYTSSFP 120
                FS  SW +    F+R   TKLLCR C NH+     GY  +FP
Sbjct: 84  S----FS-FSWRISFFNFQRTTTTKLLCRNCRNHL-----GYARTFP 120