Miyakogusa Predicted Gene

Lj1g3v3751710.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3751710.1 Non Characterized Hit- tr|F6GX63|F6GX63_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,84,8e-17,seg,NULL; Fer2_3,Succinate dehydogenase/fumarate
reductase N-terminal; Fer4_8,4Fe-4S ferredoxin-type,CUFF.31148.1
         (278 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr0018s0260.1 | succinate dehydrogenase [ubiquinone] iron-sul...   464   e-131
Medtr1g492610.1 | succinate dehydrogenase [ubiquinone] iron-sulf...   462   e-130

>Medtr0018s0260.1 | succinate dehydrogenase [ubiquinone] iron-sulfur
           subunit | HC | scaffold0018:155379-159912 | 20130731
          Length = 278

 Score =  464 bits (1195), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 218/254 (85%), Positives = 231/254 (90%)

Query: 25  RAHASETQAQQVEPKASETTRMKKFQIYRWNPENPTKPELKEYTINLKDCGPMVLDALIK 84
           RAHASE QAQQV PKA +TT +KKFQIYRWNP+ P+KPELKEY INLK+CGPMVLDALIK
Sbjct: 25  RAHASEAQAQQVSPKARDTTVLKKFQIYRWNPDTPSKPELKEYEINLKECGPMVLDALIK 84

Query: 85  IKNEVDQTLTFRRSCREGICGSCAMNIDGCNGLACLTEIPSEAKETTVTPLPHMFVIKDL 144
           IKN++D +LTFRRSCREGICGSCAMNIDGCNGLACLT+IP    ++T+TPLPHMFVIKDL
Sbjct: 85  IKNDIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKIPDAGTDSTITPLPHMFVIKDL 144

Query: 145 VVDMTNFYQQYKSIEPWLKRKSPPPVPGKEILQSKKDREKLDGMYECILCACCSTSCPSY 204
           VVDMTNFY QYKSIEPWLKRKSP    GKEI QSKKDR KLDGMYECILCACCSTSCPSY
Sbjct: 145 VVDMTNFYNQYKSIEPWLKRKSPAEEDGKEIRQSKKDRAKLDGMYECILCACCSTSCPSY 204

Query: 205 WWNPESYLGPAALLHANRWISDSRDEYTKERLEAINDEFKLYRCHSILNCADACPKLLNP 264
           WWNPESYLGPAALLHANRWISDSRDEYTKERLEAINDEFKLYRCH+ILNCA ACPK LNP
Sbjct: 205 WWNPESYLGPAALLHANRWISDSRDEYTKERLEAINDEFKLYRCHTILNCARACPKGLNP 264

Query: 265 GKQIQQIKSAQPKA 278
           GKQI  IKS QPKA
Sbjct: 265 GKQIAHIKSLQPKA 278


>Medtr1g492610.1 | succinate dehydrogenase [ubiquinone] iron-sulfur
           subunit | HC | chr1:41503746-41508477 | 20130731
          Length = 278

 Score =  462 bits (1189), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 217/254 (85%), Positives = 230/254 (90%)

Query: 25  RAHASETQAQQVEPKASETTRMKKFQIYRWNPENPTKPELKEYTINLKDCGPMVLDALIK 84
           RAHASE QAQQ  PKA +TT +KKFQIYRWNP+ P+KPELKEY INLK+CGPMVLDALIK
Sbjct: 25  RAHASEAQAQQASPKARDTTVLKKFQIYRWNPDTPSKPELKEYEINLKECGPMVLDALIK 84

Query: 85  IKNEVDQTLTFRRSCREGICGSCAMNIDGCNGLACLTEIPSEAKETTVTPLPHMFVIKDL 144
           IKN++D +LTFRRSCREGICGSCAMNIDGCNGLACLT+IP    ++T+TPLPHMFVIKDL
Sbjct: 85  IKNDIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKIPDAGMDSTITPLPHMFVIKDL 144

Query: 145 VVDMTNFYQQYKSIEPWLKRKSPPPVPGKEILQSKKDREKLDGMYECILCACCSTSCPSY 204
           VVDMTNFY QYKSIEPWLKRKSP    GKEI QSKKDR KLDGMYECILCACCSTSCPSY
Sbjct: 145 VVDMTNFYNQYKSIEPWLKRKSPAEEDGKEIKQSKKDRAKLDGMYECILCACCSTSCPSY 204

Query: 205 WWNPESYLGPAALLHANRWISDSRDEYTKERLEAINDEFKLYRCHSILNCADACPKLLNP 264
           WWNPESYLGPAALLHANRWISDSRDEYTKERLEAINDEFKLYRCH+ILNCA ACPK LNP
Sbjct: 205 WWNPESYLGPAALLHANRWISDSRDEYTKERLEAINDEFKLYRCHTILNCARACPKGLNP 264

Query: 265 GKQIQQIKSAQPKA 278
           GKQI  IKS QPKA
Sbjct: 265 GKQIAHIKSLQPKA 278